BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24140.1
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481270 jgi|Araly1|481270|fgenesh2_kg.4__330__AT2G24140.1 1515 0.0
> Ahg481270 jgi|Araly1|481270|fgenesh2_kg.4__330__AT2G24140.1
Length=1146
Score = 1515 bits (820), Expect = 0.0
Identities = 1056/1165 (91%), Gaps = 35/1165 (3%)
Strand=Plus/Plus
Query 9 ACATCTTTCTGAGCCAAATTTGGGGACTAGCTCGTCGACAAAACTCGTGTTCTTCTACAA 68
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ACATCTTTCTGAGCCAATTTTGGGGACTAGCTCGTCGACAAAACTCGTGTTCTTTTACAA 60
Query 69 A-TTTACAAGAGACTTGAGGAAGAGTTGGATGCTGAGAGAGAAGCTACTGCTACGTCAGC 127
| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ATTTTCCAAGAGACTTGAGGAAGAGTTGGATGCTGAGAGAGAAGCTACTGCTACATCAGC 120
Query 128 GAGTGAAGCCATGTCTGTGATACTTAGGCTACAAGGCGAGAAAGCGTTGCTTGCTATGGA 187
||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 GAGCGAAGCCATGTCCGTGATACTTAGGCTACAAGGCGAGAAAGCGATGCTTGCTATGGA 180
Query 188 AGCTAGCCAGTACAAGAGAATGGTTGAGGAGAGAATGTCTCATGTTGAGTTGTCAATGGA 247
||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||
Sbjct 181 AGCTAGCCAGTACAAGAGAATGGTTGAGGAGAGAATGTCACTTGCCGAGTTGTCGCTGGA 240
Query 248 GCTTTTGGAGGATTTGAATTACCAGAAAGAAGTTGAAATCAAGAATCTTGAGTGTGACTT 307
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 241 GCTTTTGGAGGATTTGAATTACCAGAAAGATGTTGAAATCAAGAATCTTGAGTGTGAATT 300
Query 308 ACATGCTTATAGATGTAAGCTTATGAGTTTGGGATGGAGTGGACTTGATGATGAGGATTG 367
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACATTCTTATAGATGTAAGCTTATGAGTTTGGGATGGAGTGGACTTGATGATGAGGATTG 360
Query 368 TATTAGATTTTGCGATAGATCTCAAACACCGTCTCCAGAACCGAATGAGACGGTTCTTGT 427
||| |||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||
Sbjct 361 TATGAGATTTTGCGATAGGTCTCAAACACCGTCTCCAGAACCGATTGAGACAGTTCCTGT 420
Query 428 GGAGAAGGGTGTTATAGAGCAGAGCTTGGATTCAAG-AAGAGATCATGAGAAGAATTTAG 486
||||||||| |||||||||||||||||||||||||| || |||| | |||||||||||||
Sbjct 421 GGAGAAGGGAGTTATAGAGCAGAGCTTGGATTCAAGGAA-AGATAAAGAGAAGAATTTAG 479
Query 487 ATTTGAATTGGGAAAAGATCAAGAAGGTGGATGAGCAGTTGAAAGAGCTTACAGATTTTC 546
||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 480 ATTTGAATTGGGATCAGATCAAGAAGCTGGATGAGCAGTTGAAAGAGCTTACGGATTTTC 539
Query 547 GAGATTCTGTAAGAGATCAATACAAGATTTTGAAGCAGGAGACAACTTCTGTTTCTGAAA 606
|||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 540 GAGATTCTATAAGAGATCAATACAAGACTTTGAAGCAGGAGACAAGTTCTGTGTCTGAAA 599
Query 607 CTAAGAATGGGGAAAAAGGTATGTGTAAACCTGATTTGTTGGTGAAAAAGATGTCCAAGA 666
|||||||||| ||||| ||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 600 CTAAGAATGGAGAAAAGGGTTTGTGTAAAACTGATTTGTTCGTGAAAAAGATGTCCAAGA 659
Query 667 AATCATTGAAACAGAAAAGAGATAAAAGTATCAAGAGAGATCA-AGCACTAGGAAGTTGT 725
|||||| |||||||||||||||||||| ||||||||||||| | ||| |||||||||
Sbjct 660 AATCATCAAAACAGAAAAGAGATAAAAGCGTCAAGAGAGATCATA-CACGGGGAAGTTGT 718
Query 726 TCTGCAAATGATGCAGAGTATCA-AGCCGAGTTACAGCGGTTGAGAGAGCGAGTAGAGC- 783
|| |||| |||||||||| ||| | ||||||| |||||||||| |||| |||||||||
Sbjct 719 TCCACAAACGATGCAGAGTGTCAGA-CCGAGTTGCAGCGGTTGAAAGAGAGAGTAGAGCT 777
Query 784 GACTAGAGCAGGAGAGATGCAACAAAGAGCCAGCTCAAACTAGTGGAGTAAGTCAAGAAA 843
| || ||||||||||||||||||| ||||||| |||||||||||||||||| |||| |||
Sbjct 778 G-CTCGAGCAGGAGAGATGCAACACAGAGCCATCTCAAACTAGTGGAGTAAATCAACAAA 836
Query 844 ATATGAATCTGCAGAGAAAATCAGAAGAAGAGTTAAGTTCTATGCAATCTGCAATGTTTA 903
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
Sbjct 837 ATATGAATCTGCAGAGAAATTCAGAAGAAGAGTTAAGTTCTGTGCAATCTGCAATGTTAA 896
Query 904 GTTATGACTCAGCTATTGTTTCTGTTCAAGAGGCAATGCTTTACTTCTGGCTATGAGACA 963
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTTATGACTCAGCTATTATTTCTGTTCAAGAGGCAATGCTTTACTTCTGGCTATGAGACA 956
Query 964 C-CCTCTCGTC-CAG-AGTTGACGGCTTTAGAGCGAGTT-ATGAT-ATCTACAAATAGCG 1018
| ||| ||||| | | |||||||||| ||||||| |||| || || || | | || |
Sbjct 957 CGCCTTTCGTCTCTGGAGTTGACGGCGTTAGAGCTAGTTCATTATGATAT-C---TA-C- 1010
Query 1019 AGTTGATTTTATAGAAAAGTATACAAACCTTGAGAACCTTATAGTGATATATTAAGATTA 1078
| | |||||||||||||||||| |||||||| |||||||| |||| ||||||||
Sbjct 1011 A----A----ATAGAAAAGTATACAAACTTTGAGAACATTATAGTGTTATACTAAGATTA 1062
Query 1079 GTTT--GT-C---ATTAAATATTGTACTTGCATTCGTTTTTTGTTTGAAGTAAGATTCAC 1132
||| | | ||||| ||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1063 GTTAAAGGGCGTGATTAA-TATTGTACTTGCATTCGTTTTTTGTTTCAAGTAAGATCCAC 1121
Query 1133 ATCTTGTGTAAAGTTTGAGACTTTG 1157
||||||||||||||||||| |||||
Sbjct 1122 ATCTTGTGTAAAGTTTGAGCCTTTG 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43155142044
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5