BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24150.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481271 jgi|Araly1|481271|fgenesh2_kg.4__331__AT2G24150.1 1784 0.0
> Ahg481271 jgi|Araly1|481271|fgenesh2_kg.4__331__AT2G24150.1
Length=1098
Score = 1784 bits (966), Expect = 0.0
Identities = 1057/1101 (96%), Gaps = 5/1101 (0%)
Strand=Plus/Plus
Query 55 CGGAGCATGAAGAGACGAAGATCGGCGAAGAAATCTCCGGCGATGGTGACGGTTACCGAT 114
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGGAGCATGAAGAGACGAAGAGCGGCGAAGAAATCTCCGGCGATGGTGACGGTTACCGAT 60
Query 115 TGGAAAGGGTTAGATTGCGGCGAAGAGACGAGAATCGTAAGGAGATTGATGAAGTTCGAA 174
|| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TGTAAAGGGTTAGATTCCGGCGAAGAGACGAGACTCGTAAGGAGATTGATGAAGTTCGAA 120
Query 175 GACTTGCCTGAGTATTTGAAGGACAACGAGTTTATACACAACCATTATCGATGTCAATGG 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACTTGCCTGAGTATTTGAAGGACAACGAGTTTATACACAACCATTATCGATGTCAATGG 180
Query 235 TCTCTCAAAGATACTTTTCTCAGTGCTTTCTCTTGGCACAACGAGACTCTCAACATTTGG 294
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TCTCTCAAAGATACTTTTCTCAGTGCTTTCTCTTGGCACAACGAAACTCTCAACATTTGG 240
Query 295 ACGCATTTAATT-GGATTTG-GTATATTTCTGTGGATGACGGTGGTGAGTTGCTTGGAGA 352
||||||||| || ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 241 ACGCATTTA-TTCGGATTTGTG-ATATTTCTGTGGATGACGGTGGTGAGTTGCTTGGAGA 298
Query 353 CGACGGAGATTAGTCTCGCCGGCGTTTTTAACGGCATGGCCGGAGTGAGGATTTGCCTCT 412
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 CGACGGAGCTTAGTCTCACCGGCGTTTTTAACGGCATGTCCGGAGTGAGGATTTGCCTCT 358
Query 413 CAAGCAATCAGACTCTGCTTCATGATTCGAACGTGACACATCACATCTCATGTCTTACCT 472
|||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 359 CAAGCAATGAGACTCTGATTCATGATTCGAACGTGACACAACACATCTCATGTCTTACCT 418
Query 473 CACAAGGAGAAGCTATTCCAAAATGGCCGTGGCTCGTGTACTTAGTCGGAGCAATGGGTT 532
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 CTCAAGGAGAAGCTATTCCAAAATGGCCATGGCTCGTGTACTTAGTCGGAGCAATGGGTT 478
Query 533 GTTTAATCTGCAGCTCTGTTTCACACCTCCTTGCTTGTCACTCAAAACGTTTCAACGTCT 592
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 479 GTTTAATCTGCAGCTCTGTTTCACACCTCCTCGCTTGTCACTCAAAACGTTTCAACCTCT 538
Query 593 TCTTCTGGCGTTTGGACTACGCAGGAATATCACTTATGATCGTCGCTTCTTTCTTTGCAC 652
||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 539 TCTTCTGGCGTTTAGACTACGCAGGAATATCTCTCATGATCGTTGCTTCTTTCTTTGCAC 598
Query 653 CAATCTACTACGCATTCTCCTGCCACCCTAACTTCCGTTTACTCTACTTatcctcgatct 712
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 CAATCTACTACGCATTCTCTTGCCACCCTAACTTCCGTTTACTCTACTTGTCCTCGATCT 658
Query 713 cgatcctcggtctcctcgctatcatcactctcctctctcccgctctctctACGCCGCGTT 772
|||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 659 CGATCCTCGGTCTCCTTGCTATCATCACTCTCCTCTCTCCTGGTCTCTCTACACCGCGTT 718
Query 773 TTAGACCTTTCAGAGCTAATCTTTTCCTTGCAATGGGATCATCTGCTGTGATACCTGCTA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTAGACCTTTCAGAGCTAATCTTTTCCTTGCAATGGGATCATCTGCTGTGATACCTGCTA 778
Query 833 CACATGTGCTTTGCCTTTACTGGGATCACCCTAATGTCTTCATCGCCCTCGGTTACGAGA 892
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 779 CACATGTGCTTTGCCTTTACTGGGATCATCCTAACGTATTCATCGCCCTCGGTTACGAGA 838
Query 893 TTGCCACGGCTTTGTCGTATTTTGTGGGAGCAACGTTTTATGTCAGCCGTGTGCCTGAGA 952
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 TTGCCACAGCCTTGTCGTATTTTGTGGGAGCAACGTTTTATGTTAGCCGTGTGCCTGAGA 898
Query 953 GATGGAAGCCTGGAGCGTTTGATATGGCGGGACATAGCCATCAGATTTTCCATGTGTTTG 1012
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 899 GATGGAAGCCTGGAGCGTTTGATATGGCTGGACATAGCCATCAGATATTCCATGTGTTTG 958
Query 1013 TAGTTATGGGTGCTCTTGCTCATTGTGTTACCACTCTTCTCATCATTGATTTTTCACGGG 1072
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 959 TAGTTTTTGGTGCTCTTGCTCATTGTGTCACCACTCTTCTCATCATTGATTTTTCACTGG 1018
Query 1073 CTTCCCCTTCTTGTGGGTTTTAGCAAGAAGATATTGTTTAGTAAGCTTCTGTGATCTTGC 1132
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1019 CTTCCCCTTCTTGTGGGTTTTAGCAAGAAGATATTGTT-AGTAAGCTTATGTGATCTTGC 1077
Query 1133 GTTTCGATGTATGTGATCTTG 1153
||||||||||||||||||||
Sbjct 1078 ATTTCGATGTATGTGATCTTG 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5