BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24170.1
Length=2382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481272 jgi|Araly1|481272|fgenesh2_kg.4__332__AT2G24170.1 3406 0.0
> Ahg481272 jgi|Araly1|481272|fgenesh2_kg.4__332__AT2G24170.1
Length=2183
Score = 3406 bits (1844), Expect = 0.0
Identities = 2076/2186 (95%), Gaps = 23/2186 (1%)
Strand=Plus/Plus
Query 214 AAATCGTCCAATTGCCATGTTTCTTCCCACTCTCTTCTCCTTCATTTAAGAAATTTCACT 273
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AAATCGTCCAATTGCCATGTTTCTTCCCACTCTCTTCTCCTTCATATAAGAAATTTCACT 60
Query 274 CTCCGAAGAAG---AAGACGAAATCGAGCAAATCCATGGCGAAAGTTCGGATTTTGATCT 330
|| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CTACGAAGAAGACAAAGACGAAATCGAGCTAATCCATGGCGAAAGTTCGGATTTTGATCT 120
Query 331 TCACCCTTGTCTTATTCTTCTCCCTCAATGTCCATATCCATGGATTTTACCTTCCCGGCG 390
|||||||| || | ||||||| |||||||||| |||||||||||||||||||||| || |
Sbjct 121 TCACCCTTTTCGTCTTCTTCTTCCTCAATGTCAATATCCATGGATTTTACCTTCCTGGTG 180
Query 391 TCGCTCCACAAGATTTCCAAATGGGAGATGCATTGATGGTGAAAGTTAATAAATTGACAT 450
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TCGCTCCTCAAGATTTCCAAATGGGTGATGCATTGATGGTGAAAGTTAATAAATTGACAT 240
Query 451 CTACAAAGACTCAGCTTCCATATTCCTATTATTCTCTTCCTTATTGTCGTCCAGAACATA 510
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 241 CTACAAAGACTCAGCTTCCATATTCCTACTATTCTCTTCCTTATTGTCGTCCTGAACATA 300
Query 511 TTGTTGATAGTGCTGAGAATCTCGGTGAAGTTCTTCGTGGTGATCGAATTGAGAACTCTC 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGTTGATAGTGCTGAGAATCTCGGTGAAGTTCTTCGTGGTGATCGAATTGAGAACTCTC 360
Query 571 CTTTTGTGTTTAAAATGAGGGAATCGCAGATGTGTGCTGCGGTTTGTCGTGTGAAGCTTG 630
| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 361 CCTTTGTGTTTAAAATGAGGGAGTCGCAGATGTGCGCTGCGGTTTGTCGAGTGAAGCTTG 420
Query 631 ATAAGAAAACCGCAAAGGCGTTTAAGGAGAAGATTGCTGATGAATATCGAGTTAACATGA 690
||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 421 ATAAGAAAACCGCCAAGGCGTTAAAGGAGAAGATTGCTGATGAGTATCGGGTTAACATGA 480
Query 691 TTTTGGACAACCTTCCCCTAGTTGTTCCGGTGCAAAGGCCAGATCAGGACAATGTTGTAG 750
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTTGGACAACCTTCCATTAGTTGTTCCGGTGCAAAGGCCAGATCAGGACAATGTTGTAG 540
Query 751 TGTATCAGCATGGTTTCCATGTTGGTCTCAAGGGAATCTTTGCTGGCAAAAAGGAGGAGA 810
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 541 TGTATCAGCATGGTTTCCATGTTGGTCTCAAGGGAATCTTTGCTGGTAAAAAGGAGGAAA 600
Query 811 AGTATTTTATCCACAACCACTTGACCTTCACTGTTAGGTATCACAGAGATATACAGACCG 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGTATTTTATCCACAACCACTTGACCTTCACTGTTAGGTATCACAGAGATATACAGACCG 660
Query 871 ATTCTTCAAGAATCGTTGGCTTTGAAGTCAAGCCGTTCAGTGTCAAACATGAATATGAAG 930
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 ATTCTTCAAGAATCGTCGGCTTTGAAGTCAAGCCGTTCAGTGTCAAGCATGAATATGAAG 720
Query 931 GTCAATGGAATGAAAAGGCTCGGTTAACGACTTGTGATCCGCATACAAAGCGTGCAGTCA 990
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 721 GTCAATGGAATGAAAAGGCTCGGTTAACGACATGTGATCCACATACAAAGCGTGCAGTCA 780
Query 991 CTAACTCTGAGTCTCCTCAGGAGGTTGAAGAAGGGAACGAGATTATCTTCACATATGATG 1050
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 781 CTAACTCTGAGTCTCCTCAGGAGGTCGAAGAAGGGAACGAGATTATATTCACATATGATG 840
Query 1051 TTGACTTCCAGGAAAGTGAGGTGAAATGGGCGTCTAGGTGGGACACTTACCTTCTAATGG 1110
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 841 TTGATTTCCAGGAGAGTGAGGTGAAATGGGCGTCTAGGTGGGACACTTACCTTCTCATGG 900
Query 1111 CTGATGATCAGATTCATTGGTTCTCAATCGTTAATTCTATGATGATTGTTCTTTTCCTCT 1170
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 901 CTGATGATCAGATTCATTGGTTCTCAATCGTTAATTCCATGATGATTGTTCTTTTTCTCT 960
Query 1171 CTGGTATGGTCGCTATGATCATGCTAAGAACACTCTACCGAGATATTTCCAACTACAATC 1230
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTGGTATGGTTGCTATGATCATGCTAAGAACACTCTACCGAGATATTTCCAACTACAATC 1020
Query 1231 AGTTAGAGAGTCATGAAGAGGCCCTCGAAGAGACGGGTTGGAAATTGGTACACGGAGATG 1290
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGTTAGAGACTCATGAAGAGGCCCTCGAAGAGACGGGTTGGAAATTGGTACACGGAGATG 1080
Query 1291 TTTTCAGACCGCCAACAAACCCGGAGTTGCTTTGTGTTTATGCAGGCACTGGAGTTCAAT 1350
||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 1081 TTTTCAGACCGCCAACAAATCCGGAGTTGCTCTGTGTCTACGCAGGCACTGGAGTTCAAT 1140
Query 1351 GCTTTGGAATGATTCTTGTCACCATGATCTTTGCTTGTCTTGGCTTTTTATCTCCTTCAA 1410
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 1141 GCTTTGGAATGATTCTTGTCACCATGATCTTCGCGTGTCTTGGCTTTTTATCCCCTTCAA 1200
Query 1411 ACCGTGGTGGTCTTATGACGGCTATGCTTTTGCTTTGGGTTTTCATGGGACTATTGGCAG 1470
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1201 ACCGTGGTGGTCTTATGACGGCTATGCTTTTGCTTTGGGTATTCATGGGACTATTGGTAG 1260
Query 1471 GATACGCGTCTTCACGCCTCTACAAGA-CGTTAAGAGGAACCGAATGGAA-AAGAAACGC 1528
|||||| |||||||||||||||||| | | ||| |||||||||||||||| || || |||
Sbjct 1261 GATACGTGTCTTCACGCCTCTACAA-ATCTTTACGAGGAACCGAATGGAAGAA-AATCGC 1318
Query 1529 TCTGAAAACCGCATTCATGTTTCCCGCTACCGTCTTTGTCGCCTTCTTTGTCCTTAATGC 1588
||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||
Sbjct 1319 TCTGAAAACCGCATTCATGTTTCCCGCTACCATCTTTGTCACCTTCTTTGTTCTGAATGC 1378
Query 1589 GATAATCTGGGGACAAAAATCATCCGGTGCAGTCCCATTTGGTACAATGTTTGCTTTGGT 1648
||||||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 1379 CATAATCTGGGGACAAAAATCATCTGGGGCTGTTCCATTTGGTACAATGTTTGCTTTGGT 1438
Query 1649 TGTCCTCTGGTTTGGTATCTCTGTTCCACTTGTTTTCATCGGTGGCTACATTGGTTTCAG 1708
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1439 CGTCCTCTGGTTTGGTATCTCTGTTCCACTTGTCTTCATCGGTGGCTACATTGGTTTCAG 1498
Query 1709 AAAACCTGCACCGGAAGATCCAGTGAAAACCAACAAGATCCCGCGGCAGATCCCAACACA 1768
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 1499 AAAACCTGCACCGGAAGATCCAGTGAAAACCAACAAGATTCCGAGGCAGATCCCAATACA 1558
Query 1769 GGCCTGGTACATGAACCCAATCTTCTCCATTTTGATTGGAGGCATTCTCCCATTTGGCGC 1828
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1559 GGCCTGGTACATGAACCCAATATTCTCCATTTTGATTGGAGGCATTCTCCCATTCGGCGC 1618
Query 1829 AGTCTTCATCGAGCTCTTCTTCATACTCACCTCAATATGGCTACATCAGTTCTACTACAT 1888
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1619 AGTCTTCATCGAGCTCTTCTTCATACTCACCTCGATATGGCTACACCAATTCTACTACAT 1678
Query 1889 ATTCGGCTTCCTCTTCATCGTCTTCATCATTTTGATCATCACTTGCGCAGAGATCACGGT 1948
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 1679 ATTCGGCTTCCTCTTCATTGTCTTCATCATATTGATCATAACTTGCGCAGAGATCACAGT 1738
Query 1949 CGTCCTCTGTTATTTTCAGCTGTGTAGTGAAGACTATCAATGGTGGTGGAGATCTTACTT 2008
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CGTCCTCTGTTATTTTCAGCTCTGTAGTGAAGACTATCAATGGTGGTGGAGATCTTACTT 1798
Query 2009 AACATCAGGCTCTTCCGCGGTTTACCTCTTTCTTTACGCAGTCTTTTACTTCTACACCAA 2068
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 AACATCAGGCTCTTCAGCGGTTTACCTCTTTCTTTACGCAGTCTTTTACTTCTACACCAA 1858
Query 2069 ACTTGAGATCACAAAGCTCGTCTCTGCAGTGCTCTACTTTGGGTACATGCTCATAGTTTC 2128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 ACTTGAGATCACAAAGCTCGTCTCTGCAGTGCTCTACTTTGGGTACATGCTCATAGTTTC 1918
Query 2129 ATACGTATTCTTCGTCTTTACTGGTGCAATTGGTTTCTACGCATGCTTTTGGTTCACCAG 2188
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 ATACGTTTTCTTCATCTTTACTGGTGCAATTGGTTTCTACGCATGCTTTTGGTTCACCAG 1978
Query 2189 GCTTATCTACTCTTCGGTTAAAATCGATTGATCTTTAATCACCTTCTTAGTAAGCTGTAT 2248
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1979 GCTTATCTACTCTTCAGTTAAAATTGATTGATCTTTAATCACCTTCTTAGTAAGCTGTAT 2038
Query 2249 CTTAAATCTTGTTCTT--------TTTCGTT-C-TT-TT----GTTTCCTCCTTTTAAAT 2293
|||||||||||||||| ||||||| | || || ||||||||||||| |||
Sbjct 2039 CTTAAATCTTGTTCTTCCGAAAAATTTCGTTTCGTTCTTTTTTGTTTCCTCCTTTTGAAT 2098
Query 2294 TTTGTGATGATTTTGAGATATGTAGACATAAACTTTTATTTTATTGTAAACATACATAGA 2353
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2099 TTTGTGATGATTTTGAGATATGTAGACATAAACTCC-ATTTTATTGTAAACATACATAGA 2157
Query 2354 GCTCAAGAGTACAACAATTGTCTCAT 2379
|||||||||||||||| | ||||||
Sbjct 2158 TCTCAAGAGTACAACAACTCTCTCAT 2183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89740617220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5