BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24180.1
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481273 jgi|Araly1|481273|fgenesh2_kg.4__333__AT2G24180.1 2381 0.0
Ahg343972 jgi|Araly1|343972|fgenesh1_pg.C_scaffold_4000314 2261 0.0
> Ahg481273 jgi|Araly1|481273|fgenesh2_kg.4__333__AT2G24180.1
Length=1600
Score = 2381 bits (1289), Expect = 0.0
Identities = 1500/1604 (94%), Gaps = 6/1604 (0%)
Strand=Plus/Plus
Query 1 CATACTACACAACCAACAAAAACTAC-AAGACGATAACAACAAAATGTCTCTTTTCTCCT 59
|||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1 CATACTACACAACCAACAAAAACTACGCA-ACAATAACAACAAAATGTCTCTTTTCTCCA 59
Query 60 TCCCCATCTCCACTGAGTTGCTTCCATGGCTTCTCCTACTTTTGATTCCTCCACTTCTTA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCCCCATCTCCACTGAGTTGCTTCCATGGCTTCTCCTACTTTTGATTCCTCCACTTCTTA 119
Query 120 TCTTCTTTCTTCTTCGTTCCCCTAAAAATCTTCCACCAGGTCCACCAAGATTACCTATCT 179
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 120 TCTTCTTTCTTCTTCGTTCCCCTAAAAATCTTCCACCAGGTCCATCAAGATTACCTCTCT 179
Query 180 TAGGAAACATCCACCAGCTCGGATCCCTCCCTCACCGCAGTCTCAGAGATCTCTCTCTCA 239
||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 180 TAGGAAACATCCACCAGCTCGGATCTCTTCCTCACCGCACTCTCAGAGATCTCTCTCTCA 239
Query 240 AATATGGCCCAGTCATCACCGTCTATCTCGGCAGCGTCCGTACCGTGGTTGTTCACTCTC 299
|||||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||
Sbjct 240 AATATGGCCCCGTCATCACCGTCTATCTCGGAAGCGTCCGGACGGTGGTTGTACACTCTC 299
Query 300 CGGAGACGGCGGAGGAAGTTCTAAAACTTCACGACTCCGAGTGTTGTACTCGTCCAAAGC 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 CGGAGACGGCGGAGGAAGTTCTAAAACTTCATGACTCCGAGTGTTGTACTCGTCCAAAGC 359
Query 360 TATCTATCACCAAAAGCTTTTTCTATGATGGACTTGGTCTAGGGTTTACTAAATGGGGTG 419
| ||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 360 TTTCTATCACCAAAAGCTTTTTCTACGATGGACTTGGTCTAGGGTTTACTCAGTGGGGTG 419
Query 420 ATTACTACAGAGATGTGCGGAAACTCTGTGTTCTTGAACTTTTCTCCGTTAAACGAGCCA 479
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |
Sbjct 420 ATTACTACAGAGATGTACGTAAACTCTGTGTTCTTGAACTTTTTTCCGTTAAACGAGCTA 479
Query 480 ACTCGTTCCGGAACATAAGAGAGGAGGAGCTGAGTCGACTCGTTAACTCGTTTTCTGACT 539
|||||| ||||| | ||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 480 GCTCGTTTAGGAACTTGAGAGAGGAGGAGCTGAGTCGACTCGTTGACTCGCTATCTGACT 539
Query 540 CGGCGTCATCTGGATCTTCCGTTGACCTTACCGCAAATTTGGCTAAGTTCGTCGCGAGCT 599
| ||| | ||||||||||||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 540 CAGCGGCGTCTGGATCTTCCGTTGATCTTACCGCGAAGTTGGCCAAGTTCGTCGCGAGCT 599
Query 600 TTACGTGTCGAATGGCGTTTGGATTGAGTTTTCAAGGAAGTGGAATGGATAACGAGACGT 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 600 TTACGTGTCGAATGGCGTTTGGATTGAGTTTTCAAGGAAGTGGAATTGATAACGAGAGGT 659
Query 660 TTCTGGAGCTGTTCACGGAGGCGAACAGAGTGATCGGAAAATTCGCGGCGGCGGATATAT 719
|| ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| |
Sbjct 660 TTATGGAGGTGTTCACGGAGGCGAACAGAGTCATCGGAAAAATCGCGGCGGCGGATATTT 719
Query 720 TCCCCGGGTTTGGCTGGATCTTGGATCGGATCAGTGGTCTTGATTCTAGCCGGAGGAAGA 779
|||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 TCCCTGGGTTTGGTTGGATCTTGGATCGGATCAATGGTCTTGATTCTAGCCGGAGGAAGA 779
Query 780 GTTTTCAAGATCTTGATACGTTTTACCAGAAAGCTATTGTTGACCATCGGGAGAAGAAGA 839
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 780 GTTTTCAAGATCTTGATACGTTTTACCAGAAAGCTATTGTTGATCATCGAGAAAAGAAGA 839
Query 840 AAACTGAAGACCGTGAAGATCTCATTGACGTCTTGCTCAAGTTACAGAGTCAAGAAACCA 899
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 840 AAACTGAAGACCGTGAAGATTTGATTGACGTCTTGCTCAAGTTACAGAGTCAAGAAACCA 899
Query 900 AACTTGGTTCTTCAAGAATCACCGATACACATATCAGAGCTATTATTATGGATTTGTTTG 959
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 900 AACTTGGTTCTTCAAGAATCACTGATACACATATCAGAGCTATTCTTATGGATTTGTTTG 959
Query 960 TAGCAGGAGTAGACACATCTGTTATCACTTTGGATTGGACAATGGCAGAGCTTTCAAGAC 1019
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 960 TAGCAGGAGTAGACACATCTGTTATCACTATGGATTGGACATTGGCAGAGCTTGCAAGAC 1019
Query 1020 ATCCAAGAGTAATGAAGAAAGTACAAGCCGAGATTCGTGAACACGTAGGAGACAAAGGTA 1079
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1020 ATCCAAGAGTGATGAAGAAAGTACAAGCCGAGATTCGTGAACTTGTAGGAGACAAAGGGA 1079
Query 1080 TAGTGACATACGATGATCTCGAGGCTCTAGTCTACATGAAAATGGTGATCAAGGAGACTT 1139
|||| || || |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 TAGTCACGTATGATGATCTTGAGGGTCTAGTCTACATGAAAATGGTGATCAAGGAGACTT 1139
Query 1140 GGAGGTTACACGCACCGAGTCCTATTCTGATTCCAAGAGAAGCAATGACTAACTTCAAGA 1199
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1140 GGAGATTACACGCACCGAGTCCGATTCTGATTCCAAGAGAAGCAATGACCAACTTCAAGA 1199
Query 1200 TCAAGGGTTATGATATTTACCCTGGAACGCGTATTCATGTCAATGCTTGGGCTATTGGAC 1259
|||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1200 TCAAGGGTTACGACATTTACCCTGGAACGCGTATTCATGTCAATGCTTGGGCGATTGGGC 1259
Query 1260 GTAACCCTGATGTATGGAAGGATCCTGATGAGTTTATACCAGAGAGATTTGTTGATAGCA 1319
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1260 GTAACCCTGATGTATGGAAGGATCCTGATGAGTTTATCCCAGAGAGATTTGTGGATAGCA 1319
Query 1320 ATGTGGAAACTAAAGGGACAAGTTTTGAGCTGTTGCCGTTTGGGAGTGGACGCAGAGGTT 1379
||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1320 ATGTGGATACTAAAGGGACGAGTTTTGAGCTATTACCGTTTGGGAGTGGACGCAGAGGTT 1379
Query 1380 GTCCCGCAATGTACGTGGGATTAAGTACGGTGGAGTACACATTGGCGAATCTTTTGTATC 1439
||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1380 GTCCCGCGATGTACATGGGATTAAGTACGGTGGAGTACACACTGGCGAATCTTTTGTATC 1439
Query 1440 ATTTTGATTGGAAAGCGACTGAGGAAGTGAGTGTTGAAGAAGCACCTGGTCTCACTAGCC 1499
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1440 ATTTTGATTGGAAAGCGACGGAGGAAGTGAGTATTGAAGAAGCACCTGGTCTCACTAGCC 1499
Query 1500 ACAGGAAGCATCCTCTTCACCTTGTTCCTGTTAATGTCATCAACCGCAAGCTTTAGAGTG 1559
| |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| ||
Sbjct 1500 ATAGGAAGCATCCTCTTCACCTTGTTCCAGTTAGTGTCATCAACCGCAAACTTTAGTTTG 1559
Query 1560 CGGAAAGCACAAACATTTAGTTTTCGACGAATAAGGCTTAATAA 1603
|||| ||| |||| | ||| | | |||||||| |||||||
Sbjct 1560 -GGAATGCA-AAACGCA-A-TTTGCAATGAATAAGGATTAATAA 1599
> Ahg343972 jgi|Araly1|343972|fgenesh1_pg.C_scaffold_4000314
Length=1512
Score = 2261 bits (1224), Expect = 0.0
Identities = 1417/1513 (94%), Gaps = 2/1513 (0%)
Strand=Plus/Plus
Query 44 ATGTCTCTTTTCTCCTTCCCCATCTCCACTGAGTTGCTTCCATGGCTTCTCCTACTTTTG 103
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCTTTTCTCCATCCCCATCTCCACTGAGTTGCTTCCATGGCTTCTCCTACTTTTG 60
Query 104 ATTCCTCCACTTCTTATCTTCTTTCTTCTTCGTTCCCCTAAAAATCTTCCACCAGGTCCA 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTCCTCCACTTCTTATCTTCTTTCTTCTTCGTTCCCCTAAAAATCTTCCACCAGGTCCA 120
Query 164 CCAAGATTACCTATCTTAGGAAACATCCACCAGCTCGGATCCCTCCCTCACCGCAGTCTC 223
||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 121 TCAAGATTACCTCTCTTAGGAAACATCCACCAGCTCGGATCTCTTCCTCACCGCACTCTC 180
Query 224 AGAGATCTCTCTCTCAAATATGGCCCAGTCATCACCGTCTATCTCGGCAGCGTCCGTACC 283
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 181 AGAGATCTCTCTCTCAAATATGGCCCCGTCATCACCGTCTATCTCGGAAGCGTCCGGACG 240
Query 284 GTGGTTGTTCACTCTCCGGAGACGGCGGAGGAAGTTCTAAAACTTCACGACTCCGAGTGT 343
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GTGGTTGTACACTCTCCGGAGACGGCGGAGGAAGTTCTAAAACTTCATGACTCCGAGTGT 300
Query 344 TGTACTCGTCCAAAGCTATCTATCACCAAAAGCTTTTTCTATGATGGACTTGGTCTAGGG 403
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TGTACTCGTCCAAAGCTTTCTATCACCAAAAGCTTTTTCTACGATGGACTTGGTCTAGGG 360
Query 404 TTTACTAAATGGGGTGATTACTACAGAGATGTGCGGAAACTCTGTGTTCTTGAACTTTTC 463
|||||| | ||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 361 TTTACTCAGTGGGGTGATTACTACAGAGATGTACGTAAACTTTGTGTTCTTGAACTTTTT 420
Query 464 TCCGTTAAACGAGCCAACTCGTTCCGGAACATAAGAGAGGAGGAGCTGAGTCGACTCGTT 523
|||||||||||||| |||||||| ||||| | |||||||||||||||| ||||||||||
Sbjct 421 TCCGTTAAACGAGCTAACTCGTTTAGGAACTTGAGAGAGGAGGAGCTGATTCGACTCGTT 480
Query 524 AACTCGTTTTCTGACTCGGCGTCATCTGGATCTTCCGTTGACCTTACCGCAAATTTGGCT 583
||||||| |||||||||||| | ||||||||||||||||| || || || || |||||
Sbjct 481 GACTCGTTATCTGACTCGGCGGCGTCTGGATCTTCCGTTGATCTCACGGCGAAGTTGGCC 540
Query 584 AAGTTCGTCGCGAGCTTTACGTGTCGAATGGCGTTTGGATTGAGTTTTCAAGGAAGTGGA 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGTTCGTCGCGAGCTTTACGTGTCGAATGGCGTTTGGATTGAGTTTTCAAGGAAGTGGA 600
Query 644 ATGGATAACGAGACGTTTCTGGAGCTGTTCACGGAGGCGAACAGAGTGATCGGAAAA-TT 702
|| ||||| |||| |||| ||||| |||||||||||||||||||||| ||||||||| ||
Sbjct 601 ATTGATAATGAGAGGTTTATGGAGGTGTTCACGGAGGCGAACAGAGTCATCGGAAAAATT 660
Query 703 CGCGGCGGCGGATATATTCCCCGGGTTTGGCTGGATCTTGGATCGGATCAGTGGTCTTGA 762
||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 661 T-CGGCGGCGGATATTTTCCCTGGGTTTGGTTGGATCTTGGATCGGATCAATGGTCTTGA 719
Query 763 TTCTAGCCGGAGGAAGAGTTTTCAAGATCTTGATACGTTTTACCAGAAAGCTATTGTTGA 822
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 TTCTAGCCGGAGGAAGAGTTTTCAAGATCTTGATACGTTTTATCAGAAAGCTATTGTTGA 779
Query 823 CCATCGGGAGAAGAAGAAAACTGAAGACCGTGAAGATCTCATTGACGTCTTGCTCAAGTT 882
||||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 780 TCATCGAGAAAAGAAGAAAACTGAAGACCGTGAAGATTTGATTGACGTCTTGCTCAAGTT 839
Query 883 ACAGAGTCAAGAAACCAAACTTGGTTCTTCAAGAATCACCGATACACATATCAGAGCTAT 942
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 840 ACAGAGTCAAGAAACCAAACTTGGTTCTTCAAGAATCACTGATACACATATCAGAGCCAT 899
Query 943 TATTATGGATTTGTTTGTAGCAGGAGTAGACACATCTGTTATCACTTTGGATTGGACAAT 1002
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 900 TCTTATGGATTTGTTTGTAGCAGGAGTAGACACATCTGTTATCACTATGGATTGGACATT 959
Query 1003 GGCAGAGCTTTCAAGACATCCAAGAGTAATGAAGAAAGTACAAGCCGAGATTCGTGAACA 1062
|||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 960 GGCAGAGCTTGCAAGACATCCAAGAGTGATGAAAAAAGTACAAGCTGAGATTCGTGAACT 1019
Query 1063 CGTAGGAGACAAAGGTATAGTGACATACGATGATCTCGAGGCTCTAGTCTACATGAAAAT 1122
| ||||||||||||| ||||| || || |||||||| |||| ||||||||||||||||||
Sbjct 1020 CATAGGAGACAAAGGGATAGTCACGTATGATGATCTTGAGGGTCTAGTCTACATGAAAAT 1079
Query 1123 GGTGATCAAGGAGACTTGGAGGTTACACGCACCGAGTCCTATTCTGATTCCAAGAGAAGC 1182
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1080 GGTGATCAAGGAGACTTGGAGATTACACGCACCAAGTCCGATTCTGATTCCAAGAGAAGC 1139
Query 1183 AATGACTAACTTCAAGATCAAGGGTTATGATATTTACCCTGGAACGCGTATTCATGTCAA 1242
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1140 AATGACTAACTTCAAGATCAAGGGTTACAACATTTACCCTGGAACGCGTATTCATGTCAA 1199
Query 1243 TGCTTGGGCTATTGGACGTAACCCTGATGTATGGAAGGATCCTGATGAGTTTATACCAGA 1302
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1200 TGCATGGGCGATTGGGCGTAACCCTGATGTATGGAAGGATCCTGATGAGTTTATCCCAGA 1259
Query 1303 GAGATTTGTTGATAGCAATGTGGAAACTAAAGGGACAAGTTTTGAGCTGTTGCCGTTTGG 1362
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1260 GAGATTTGTGGATAGCAATGTGGATACTAAAGGGACAAGTTTTGAGCTATTGCCGTTTGG 1319
Query 1363 GAGTGGACGCAGAGGTTGTCCCGCAATGTACGTGGGATTAAGTACGGTGGAGTACACATT 1422
||||||||| ||||||||||| || |||||| |||||||||||||||||||||||||| |
Sbjct 1320 GAGTGGACGAAGAGGTTGTCCTGCGATGTACTTGGGATTAAGTACGGTGGAGTACACACT 1379
Query 1423 GGCGAATCTTTTGTATCATTTTGATTGGAAAGCGACTGAGGAAGTGAGTGTTGAAGAAGC 1482
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1380 GGCGAATCTTTTGTATCATTTTGATTGGAAAGCGACGGAGGAAGTGAGTATTGAAGAAGC 1439
Query 1483 ACCTGGTCTCACTAGCCACAGGAAGCATCCTCTTCACCTTGTTCCTGTTAATGTCATCAA 1542
|||||||||||||||||||||||||||||||||||||||| |||| |||| || ||||||
Sbjct 1440 ACCTGGTCTCACTAGCCACAGGAAGCATCCTCTTCACCTTATTCCAGTTAGTGCCATCAA 1499
Query 1543 CCGCAAGCTTTAG 1555
|||||||||||||
Sbjct 1500 CCGCAAGCTTTAG 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63801160375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5