BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24190.2
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481274 jgi|Araly1|481274|fgenesh2_kg.4__334__AT2G24190.2 1417 0.0
Ahg486598 jgi|Araly1|486598|fgenesh2_kg.5__2590__AT3G61220.1 1110 0.0
> Ahg481274 jgi|Araly1|481274|fgenesh2_kg.4__334__AT2G24190.2
Length=1010
Score = 1417 bits (767), Expect = 0.0
Identities = 909/978 (93%), Gaps = 7/978 (1%)
Strand=Plus/Plus
Query 1 ACATTTCGTTTGAAACATTCTTGTCTGAACTAAAACCTAGaaaaaaaTGGCTGAGGAATC 60
||| ||||||||||||||| ||||||||||| ||||| || |||||||| |||||||| |
Sbjct 1 ACAATTCGTTTGAAACATT-TTGTCTGAACTGAAACCCAG-AAAAAATGTCTGAGGAAAC 58
Query 61 ACCAAGTTCTGGCCTTTGTAGATATGCTATAGTTACTGGAGGGAATAGAGGAATTGGATT 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ACCAAGTTCTGGGTTTTGTAGATATGCTATAGTTACTGGAGGGAATAGAGGAATTGGATT 118
Query 121 TGAGATATGCAGACAATTAGCAAACAAAGGGATTAGGGTTATTTTGACATCTAGAGATGA 180
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 119 TGAGATATGCAGACAATTAGCAAACCAAGGGATTAGGGTTGTTCTGACATCTAGAGATGA 178
Query 181 GAAACAAG-GG-CTTGAAGCTGTTGAGACATTGAAGAAAGAGCTTGAGATTTCTGATCAA 238
|| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 -AAG-AAGAGGACTTGAAGCTGTTGAGACATTGAAGAAAGAGCTTGGGATTTCTGATCAA 236
Query 239 AGCATTGTCTTTCATCAGCTTGATGTCTCTGATCCTGTTAGTGTCACTTCTCTTGCTGAG 298
|||| |||||||||||||||||||||||||||||| | |||| || | ||||||||||||
Sbjct 237 AGCACTGTCTTTCATCAGCTTGATGTCTCTGATCCAGCTAGTATCTCATCTCTTGCTGAG 296
Query 299 TTTGTGAAAACCCATTTCGGAAAACTCGATATCTTGATCAATAATGCTGGGGTTGGTGGT 358
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 297 TTTGTGAAAACCCAATTCGGAAAACTCGATATCTTGATTAATAATGCAGGGGTTGGTGGT 356
Query 359 GTAATCACTGATGTTGATGCTTTAAGAGCTGGGACAGGGAAAGAAGGTTTCAAGTGGGAG 418
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 357 GTAATCACTGATGTTGATGCTTTAAGAGCTGGGACTGGGAAAGAAGGTTTCAAATGGGAG 416
Query 419 GAAACTATCACTGAGACTTATGAGCTAGCTGAGGAATGCATAAAGATTAACTATTATGGA 478
||||||||||| ||||| |||||||||||||| |||||||| |||||||||| |||||||
Sbjct 417 GAAACTATCACAGAGACGTATGAGCTAGCTGAAGAATGCATCAAGATTAACTGTTATGGA 476
Query 479 CCAAAGAGAATGTGTGAGGCGTTTATTCCACTTTTGCAGTTATCTGATTCTCCAAGAATC 538
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 CCAAAGAGAATGTGTGAGTCGTTTATTCCTCTTTTGCAGTTATCTGATTCTCCAAGAATC 536
Query 539 ATTAACGTATCATCCTTCATGGGTCAAGTAAAGAATTTAGTAAACGAATGGGCAAAAGGG 598
|||| |||||||| |||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 537 GTTAATGTATCATCATTCATGGGTCAACTAAAGAATTTACTAAACGAATGGGCAAAAGGG 596
Query 599 ATCCTGAGTGACGCAGAGAATCTAACGGAGGTAAGAATTGACCAAGTGATCAACCAACTT 658
|||||||| ||||| |||||||| |||| || |||||| || ||||||||||||||||||
Sbjct 597 ATCCTGAGCGACGCTGAGAATCTCACGGTGGAAAGAATCGATCAAGTGATCAACCAACTT 656
Query 659 CTCAATGATCTGAAAGAAGATACGGCTAAGACAAAATATTGGGCTAAAGTCATGTCGGCT 718
|||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct 657 CTCAATGATCTGAAGGAAGATACGGTTAAGACAAAAGATTGGGCTAAAGTCATGTCTGCC 716
Query 719 TACGTTGTTTCGAAAGCCGGTTTGAATGCTTACACGAGGATCTTAGCGAAGAAACATCCC 778
|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct 717 TACGTTGTTTCGAAAGCCGGTTTGAATGGTTACACGAGGATCTTGGCAAAGAAACATCCC 776
Query 779 GAGATTCGCGTTAACTCGGTTTGTCCTGGATTTGTTAAGACTGATATGAATTTTAAAACT 838
||| |||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 777 GAGTTTCGTGTAAACTCGGTTTGTCCTGGATTTGTTAAGACGGATATGAATTTCAAAACT 836
Query 839 GGAATTTTATCTGTGGAAGAAGGAGCATCAAGTCCTGTGAGGTTAGCTTTGCTTCCACAT 898
||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 837 GGAGTTTTGTCTGTGGAAGAAGGAGCATCAAGTCCTGTAAGGTTAGCTTTGCTTCCACAT 896
Query 899 CAAGAATCTCCTTCTGGTTGCTTCTTTGATCGCAAACAAGTTTCAGAGTTCTGAAATCTT 958
| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 897 CGAGAATCTCCTTCTGGTTGTTTCTTTGATCGTAAACAAGTTTCAGAGTTCTGAAATCTT 956
Query 959 TGTGTGGAGATAG-ATAA 975
||||||| ||||| ||||
Sbjct 957 TGTGTGGGGATAGTATAA 974
> Ahg486598 jgi|Araly1|486598|fgenesh2_kg.5__2590__AT3G61220.1
Length=962
Score = 1110 bits (601), Expect = 0.0
Identities = 789/880 (90%), Gaps = 12/880 (1%)
Strand=Plus/Plus
Query 80 AGATATGCTATAGTTACTGGAGGGAATAGAGGAATTGGATTTGAGATATGCAGACAATTA 139
||||||||| |||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 83 AGATATGCTGTAGTTACTGGAGCAAACAGAGGGATTGGATTTGAGATATGCAGACAATTA 142
Query 140 GC-AAACAAAGGGATTAGGGTTATTTTGACATCTAGAGATGAGAAACA-AGGGCTTGAAG 197
|| | | |||||||||| ||| ||||||||||||||||||||||| | ||| |||||||
Sbjct 143 GCTAGTC-AAGGGATTAGAGTTGTTTTGACATCTAGAGATGAGAAA-AGAGGACTTGAAG 200
Query 198 CTGTTGAGACATTGAAGAAAGAGCTTGAGATTTCTGATCAAAGCATTGTCTTTCATCAGC 257
||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 201 CTGTTGAGACACTGAAGAAAGAGCTTCAGATTTCTGATCAAAGCCTTGTTTTTCATCAGC 260
Query 258 TTGATGTCTCTGATCCTGTTAGTGTCACTTCTCTTGCTGAGTTTGTGAAAACCC-ATTTC 316
|||||||||||||||||| |||| |||| ||||||||||||||||||||||||| ||||
Sbjct 261 TTGATGTCTCTGATCCTGCTAGTATCACATCTCTTGCTGAGTTTGTGAAAACCCTATTT- 319
Query 317 GGAAAACTCGATATCTTGATCAATAATGCTGGGGTTGGTGGTGTAATCACTGATGTTGAT 376
|| ||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||
Sbjct 320 GGGAAACTCGATATCTTGGTCAATAATGCAGGGGTTGGTGGTATAATCACTGATGCTGAT 379
Query 377 GCTTTAAGAGCTGGGACAGGGAAAGAAGGTTTCAAGTGGGAGGAAACT-ATCACTGAGAC 435
||| ||||||||||| ||||||||||||||||||||||||| |||| | ||||| |||||
Sbjct 380 GCTCTAAGAGCTGGGGCAGGGAAAGAAGGTTTCAAGTGGGATGAAA-TCATCACGGAGAC 438
Query 436 TTATGAGCTAGCTGAGGAATGCATAAAGATTAACTATTATGGACCAAAGAGAATGTGTGA 495
||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 439 TTATGAGTTAGCTGAAGAATGCATCAAGATTAACTATTATGGACCAAAGAGAATGTGTGA 498
Query 496 GGCGTTTATTCCACTTTTGCAGTTATCTGATTCTCCAAGAATCATTAACGTATCATCCTT 555
|||||||||||| |||||| ||||||||||||| ||||||||| | || ||||||||||
Sbjct 499 GGCGTTTATTCCTCTTTTGAAGTTATCTGATTCACCAAGAATCGTCAATGTATCATCCTC 558
Query 556 CATGGGTCAAGTAAAGAATTTAGTAAACGAATGGGCAAAAGGGATCCTGAGTGACGCAGA 615
|||||||| | |||||||| || ||||||||||||||||||| |||||||| || |||||
Sbjct 559 CATGGGTCTACTAAAGAATGTACTAAACGAATGGGCAAAAGGAATCCTGAGCGATGCAGA 618
Query 616 GAATCTAACGGAGGTAAGAATTGACCAAGTGATCAACCAACTTCTCAATGATCTGAAAGA 675
|||||| ||||||| |||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 619 GAATCTCACGGAGGAAAGAATCGACCAAGTGATCAACCAACTTCTCAATGATTTCAAAGA 678
Query 676 AGATACGGCTAAG-ACAAAATATTGGGCTAAAGTCATGTCGGCTTACGTTGTTTCGAAAG 734
|| ||| | |||| | |||| | ||||||||| | ||||| |||||||| |||||||| |
Sbjct 679 AGGTACAGTTAAGGAAAAAA-ACTGGGCTAAATTTATGTCAGCTTACGTGGTTTCGAAGG 737
Query 735 CCGGTTTGAATGCTTACACGAGGATCTTAGCGAAGAAACATCCCGAGATTCGCGTTAACT 794
|| ||||||||| ||||||||||||||| ||||||| |||||||||| ||||||| |||
Sbjct 738 CCAGTTTGAATGGTTACACGAGGATCTTGGCGAAGATACATCCCGAGTTTCGCGTAAACG 797
Query 795 CGGTTTGTCCTGGATTTGTTAAGACTGATATGAATTTTAAAACTGGAATTTTATCTGTGG 854
|||| |||||||||||||||||||| |||||||| || || |||||| |||| |||||||
Sbjct 798 CGGTGTGTCCTGGATTTGTTAAGACGGATATGAACTTCAAGACTGGAGTTTTGTCTGTGG 857
Query 855 AAGAAGGAGCATCAAGTCCTGTGAGGTTAGCTTTGCTTCCACATCAAGAATCTCCTTCTG 914
|||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 858 AAGAAGGAGCATCAAGTCCTGTGAGGTTGGCTTTGCTTCCGCATCAAGAAACTCCTTCTG 917
Query 915 GTTGCTTCTTTGATC-GCAAACAAGTTTCAGAGTTCTGAA 953
|||| |||||| | | |||| ||||||||||| |||||||
Sbjct 918 GTTGTTTCTTT-AGCCGCAAGCAAGTTTCAGAATTCTGAA 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5