BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24200.1
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481277 jgi|Araly1|481277|fgenesh2_kg.4__337__AT2G24200.1 2748 0.0
Ahg944893 jgi|Araly1|944893|scaffold_701122.1 1500 0.0
Ahg889026 jgi|Araly1|889026|Al_scaffold_0007_1012 1404 0.0
> Ahg481277 jgi|Araly1|481277|fgenesh2_kg.4__337__AT2G24200.1
Length=1783
Score = 2748 bits (1488), Expect = 0.0
Identities = 1690/1788 (95%), Gaps = 11/1788 (1%)
Strand=Plus/Plus
Query 34 TTTCATTGTTTACTCTTTCGTCTTCCT-TTTCAGAGTTCAATCACACAACACCTCTCTTC 92
||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1 TTTCATTGTTTACTCCTTCGTCTTCCTCTTT-AGAGTTCAATCACACAACACCTCTCTTC 59
Query 93 AATAGCAATAACCATGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCA 152
|||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 60 AATAGCCATAACCATGGCTCACACTCTCGGCCTCACTAAACCCAACTCCACTGAGCCTCA 119
Query 153 CAAGATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATACTCGT 212
||||||||||||| ||||||||||| ||||||| | | |||||||||| ||||||||||
Sbjct 120 CAAGATCTCGTTCTCTGCGAAGGAGGTCGATGTTACGGCATGGAAAGGACACATACTCGT 179
Query 213 AGTTGGTGTGACAGAGAAGGACTTAGCCAAAGACGGTAACTCAAAGTTTGAGAATCCGAT 272
|||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||
Sbjct 180 AGTTGGTGTGACAGAGAAAGACTTAGCCAAAGATGGTAGCTCAAAGTTTGAGAATCCGAT 239
Query 273 CTTGAGCAAGGTCGATGCTCACTTAAGTGGACTTTTAGCTCAAGTCTCTTCCGAGGAAGA 332
||||| |||| | ||||||||||| |||||||| |||||||||||||| || ||||||||
Sbjct 240 CTTGAACAAGCTTGATGCTCACTTGAGTGGACTCTTAGCTCAAGTCTCCTCTGAGGAAGA 299
Query 333 TTTCACTGGGAAACCTGGTCAATCGACTGTTCTCAGGCTTCCGGGTTTAGGATCAAAGAG 392
||||||||| |||||||||||||| |||||||| |||||||||||| | || |||||| |
Sbjct 300 TTTCACTGGAAAACCTGGTCAATCAACTGTTCTTAGGCTTCCGGGTCTCGGTTCAAAGCG 359
Query 393 AATCGCTTTGATCGGTCTTGGACAGTCTGTTTCGTCTCCGGTGGCTTTTCATAGCCTTGG 452
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 360 AATCGCTTTGATCGGTCTTGGTCAGTCTGTTTCAACTCCGGTGGCTTTTCATAGCCTTGG 419
Query 453 TGAAGCTGTAGCTACAGTTTCAAAAGCTTCTCAATCTACTAGTGCTGCTATTGTGCTTGC 512
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 420 TGAAGCTGTAGCTACAGTTTCAAAAGCTTCTCAATCTAGTAGCGCTGCTATTGTGCTTGC 479
Query 513 TTCAAGTGTTTCTGATGAATCTAAGCTTAGTTCTGTATCAGCTTTAGCTTCAGGCATAGT 572
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 TTCAAGTGTTTCTGATGAATCTAAGCTTAGTTCTGCATCAGCTTTAGCTTCAGGCATAGT 539
Query 573 ACTTGGTTTATTTGAAGATGGTAGGTATAAGTCTGAATCAAAGAAACCATCTTTGAAAG- 631
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 GCTTGGTTTGTTTGAAGATGGTAGGTATAAGTCTGAATCAAAGAAACCATCTTTG-AAGT 598
Query 632 CTGTTGATATTATTGGATTTGGAACTGGGGCTGAGGTAGAAAAGAAGCTGAAGTATGCTG 691
|||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 599 CTGTTGATATCATTGGATTTGGAACTGGTCCTGAGATAGAGAAGAAGCTGAAGTATGCTG 658
Query 692 AAGATGTTTCTTACGGTGTAATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGC 751
||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 659 AAGATGTTTCTTACGGTGTGATTTTCGGGAGAGAACTCACTAATTCTCCTGCCAATGTGC 718
Query 752 TTACTCCTGCTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCT 811
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 TTACTCCTGCTGTACTAGCTGAGGAAGCAGCAAAAGTGGCTTCTACGTACAGTGATGTCT 778
Query 812 TCACTGCAAACATCTTGAACGAAGAGCAATGCA-AAGAGTTGAAGATGGGTTCTTACCTA 870
||||||||||||||||||||||||||||||||| || |||||||||||||||| || |||
Sbjct 779 TCACTGCAAACATCTTGAACGAAGAGCAATGCAGAA-AGTTGAAGATGGGTTCCTATCTA 837
Query 871 GCTGTTGCTGCTGCGTCGGCTAATCCTCCTCACTTCATCCACCTTGTCTATAAACC-TCC 929
|||||||||||||| ||||| ||||| ||| | |||||||||||||| |||||||| |||
Sbjct 838 GCTGTTGCTGCTGCCTCGGCGAATCCCCCTTATTTCATCCACCTTGTTTATAAACCTTCC 897
Query 930 GAATGGCTCTGTTAAGACCAAACTTGCTCTTGTTGGAAAAGGATTGACCTTTGACAGTGG 989
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 898 -AGTGGCTCTGTTAAGACCAAACTTGCTCTTGTAGGAAAAGGATTGACCTTTGACAGTGG 956
Query 990 TGGCTACAACATTAAGACTGGACCTGGCTGCTCAATTGAGCTCATGAAATTCGACATGGG 1049
|||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 957 TGGCTACAACATTAAGACTGGACCAGGCTGCTTAATTGAGCTCATGAAATTAGACATGGG 1016
Query 1050 CGGTTCAGCTGCTGTTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGT 1109
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CGGCTCAGCTGCTGTTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGT 1076
Query 1110 TGAGGTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATGAGACC 1169
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1077 TGAGGTTCATTTCATCGTTGCCGCCTGTGAGAATATGATCAGTGGAACCGGAATGAGACC 1136
Query 1170 TGGAGATGTCATCACTGCCTCAAACGGAAAGACCATTGAGGTCAACAACACAGATGCTGA 1229
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1137 TGGAGATGTCATCACAGCCTCGAACGGAAAGACCATTGAAGTCAACAACACAGATGCTGA 1196
Query 1230 AGGTCGTCTAACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAGAT 1289
||||||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1197 AGGTCGTTTAACACTTGCAGATGCTCTAGTGTATACTTGTAACCAGGGCGTCGACAAGAT 1256
Query 1290 TGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACTTCAATGGCAGG 1349
||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||
Sbjct 1257 TGTTGACCTCGCTACTTTGACTGGGGCCTGTATTATTGCTCTTGGGTCTTCAATGGCAGG 1316
Query 1350 AATCTATACACCTAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCAGAAAGGAGTGG 1409
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TATCTATACACCTAGCGACGACCTTGCAAAGGAAGTGATTGCTGCATCAGAAAGGAGTGG 1376
Query 1410 AGAGAAGCTGTGGAGGATGCCACTGGAAGAGAGCTATTGGGAGATGATGAAGTCTGGAGT 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGAGAAGCTGTGGAGGATGCCACTGGAAGAGAGCTATTGGGAGATGATGAAGTCTGGAGT 1436
Query 1470 GGCTGATATGGTCAACACAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTT 1529
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1437 GGCTGATATGGTCAACACAGGCGGGCGTGCAGGAGGTTCCATCACCGCAGCTCTCTTCTT 1496
Query 1530 GAAACAGTTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCGGTGTG 1589
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1497 GAAACAGTTTGTGAGTGAGAAGGTGCAATGGATGCATATCGACATGGCTGGACCAGCGTG 1556
Query 1590 GAACGAGAAGAAGAAGTCTGGGACCGGGTTTGGTGTTGCTACGCTTGTTGAATGGGTACA 1649
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1557 GAACGAGAAGAAGAAGTCTGGGACTGGGTTTGGTGTTGCTACGCTTGTTGAATGGGTACA 1616
Query 1650 GAAGAATTCATCTTCGTGAATGAAACCTAGAGAG-CGTGAGGGAGAGACTGTAGAGTTTT 1708
|||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||
Sbjct 1617 GAAGAATTCATCTTCGTGAATGAAACCTAGAGAGACA-GAGAGAGAGACCGTAGAGTTTT 1675
Query 1709 TCGGGTGTTGAAATGATTGCTGGTTTTTAATAAGGTCTCAAAAGTTACTATGTTTTCAGA 1768
|| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1676 TCAGGTGTTGAAGTGATTGCTGGTTTTTAATAAGGTCTCAAAAGTTACTGTGTTTTCAGA 1735
Query 1769 T-GTTCTTAACTTGTTATGAAAAGTAAAATCGTCAAAAGTTGAATAAA 1815
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TTGTTCTTAACTTGTTATGAAAAGTAAAATCGTCAAAAGTTGAATAAA 1783
> Ahg944893 jgi|Araly1|944893|scaffold_701122.1
Length=1792
Score = 1500 bits (812), Expect = 0.0
Identities = 1328/1578 (84%), Gaps = 31/1578 (2%)
Strand=Plus/Plus
Query 115 ACTCTCGGTCTCACTCAACCCAACTCCACT-GAGCCT-CACAAGATCTCGTTCACTGCGA 172
|||||||| || ||||| |||||||| | || | | || |||||||| || | | ||
Sbjct 213 ACTCTCGGCCTTACTCATGCCAACTCC-GTCGATCATCCA-AAGATCTCATTTTCCGGGA 270
Query 173 AGGAGATCGATGTAATTGAATGGAAAGGAGACATACTCGTAGTTGGTGTGACAGAGAAGG 232
|||||||||| || | ||||||||||| || ||||||| ||||| ||||| ||||| |
Sbjct 271 AGGAGATCGACGTGACGGAATGGAAAGGTGATATACTCGCGGTTGGAGTGACGGAGAAAG 330
Query 233 ACT-TAGCCAAAGACGGT-AACTCAAAGTTTGAGAATCCGATCTTG-AGCAAGGTCGATG 289
| | | || || || || ||||| ||||| || || || || ||| || ||| ||||||
Sbjct 331 A-TATGGCTAAGGA-TGTGAACTCCAAGTTCGAAAACCCCATATTGAAG-AAGCTCGATG 387
Query 290 CTCACTTAAGTGGACTTTTAGCTCAAGTCTCTTCCGAGGAAGATTTCACTGGGAAACCTG 349
||||||| |||||||| ||||| | |||||||| ||||||||||| | ||||||||||
Sbjct 388 CTCACTTGGGTGGACTTCTAGCTGATGTCTCTTCTGAGGAAGATTTTTCCGGGAAACCTG 447
Query 350 GTCAATCGACTGTTCTCAGGCTTCCGGGTTTAGGATCAAAGAGAATCGCTTTGATCGGTC 409
| || || || ||||| |||||||||||| | || |||||| | ||| |||||| ||||
Sbjct 448 GCCAGTCAACAGTTCTTAGGCTTCCGGGTCTCGGGTCAAAGCGGGTCGGTTTGATTGGTC 507
Query 410 TTGGACAGTCTGTTTCGTCTCCGGT-GGCTTTTCATAGCCTTGGTGAAGCTGTAGCTACA 468
| ||| | |||| ||| ||||| | ||||||||| || |||||||| ||||| ||| ||
Sbjct 508 TAGGAAAATCTGCTTCATCTCC-TTCGGCTTTTCAAAGTCTTGGTGAGGCTGTTGCTGCA 566
Query 469 GTTTCAAAAGCTTCTCAATCTACTAGTGCTGCTA-TTGTGCTTGC-T--TC--A-AGTGT 521
| | | |||||||||||| ||| ||||| ||| | |||| ||||| | || | |||||
Sbjct 567 GCTGCTAAAGCTTCTCAAGCTAGTAGTGTTGC-AGTTGTTCTTGCATCCTCAGAGAGTGT 625
Query 522 TTCTGATGAATCTAAGCTTAGTTCTG-TATCAGCTTTAGCTTCAGGCATAGTACTTGGTT 580
|||||||||||| ||||| ||||||| | |||||| |||||||||||| ||| |||||||
Sbjct 626 TTCTGATGAATCCAAGCTCAGTTCTGCT-TCAGCTATAGCTTCAGGCACAGTGCTTGGTT 684
Query 581 TATTTGAAGATGGTAGGTATAAGTCTGAATCAAAGAAACCATCTTTGAAAGCTGTTGATA 640
| |||||||| | ||||||||||||| ||||||||||||||| | ||| |||| ||||
Sbjct 685 TGTTTGAAGACAGCCGGTATAAGTCTGAGTCAAAGAAACCATCTCTCAAATCTGTGGATA 744
Query 641 TTATTGGATTTGGAACTGGGGCTGAGGTAGAAAAGAAGCTGAAGTATGCTGAAGATGTTT 700
| ||||| ||||| ||||| |||| |||| ||||||| |||||||||||| ||||||
Sbjct 745 TCATTGGCTTTGGCACTGGACCTGAACTAGAGGAGAAGCTTAAGTATGCTGAACATGTTT 804
Query 701 CTTACGGTGTAATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG 760
|||| || ||||||||||||| ||| || |||||||||| |||||||| || || ||||
Sbjct 805 CTTATGGCGTAATTTTCGGGAAAGAACTTGTTAATTCTCCAGCCAATGTTCTCACCCCTG 864
Query 761 CTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCTTCACTGCAA 820
| ||||||||||||||||| |||| ||||||| | ||||||||||||| | |||||||
Sbjct 865 CCGTACTAGCTGAGGAAGCCTCAAATCTGGCTTCCATGTACAGTGATGTCATGACTGCAA 924
Query 821 ACATCTTGAACGAAGAGCAATGCAAAGAGTTGAAGATGGGTTCTTACCTAGCTGTTGCTG 880
||||||||||||| || |||||||||||| ||||||||||||| || || ||||| ||||
Sbjct 925 ACATCTTGAACGAGGAACAATGCAAAGAGCTGAAGATGGGTTCATATCTTGCTGTAGCTG 984
Query 881 CTGCGTCGGCTAATCCTCCTCACTTCATCCACCTTGTCTATAAACCTCCGAATGGCTCTG 940
|||| || |||||||| ||||| |||||||||||| |||| |||||| | | |||| |||
Sbjct 985 CTGCTTCAGCTAATCCACCTCATTTCATCCACCTTATCTACAAACCTTCTAGTGGCCCTG 1044
Query 941 TTAAGACCAAACTTGCTCTTGTTGGAAAAGGATTGACCTTTGACAGTGGTGGCTACAACA 1000
|||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 1045 TTAAAACCAAACTTGCTCTTGTTGGGAAAGGATTGACATTTGACAGCGGTGGCTACAACA 1104
Query 1001 TTAAGACTGGACCTGGCTGCTCAATTGAGCTCATGAAATTCGACATGGGCGGTTCAGCTG 1060
||||||| || |||||||||| ||||||||||||||||||||| ||||| ||||||||||
Sbjct 1105 TTAAGACCGGGCCTGGCTGCTTAATTGAGCTCATGAAATTCGATATGGGAGGTTCAGCTG 1164
Query 1061 CTGTTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGGTTCA-T 1119
|||||||||||||||| ||||| |||| | | ||||||||||| ||||||||||| || |
Sbjct 1165 CTGTTCTTGGCGCTGCAAAAGCCATTGCTCAAATTAAGCCTCCCGGTGTTGAGGTGCACT 1224
Query 1120 TTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATGAGACCTGGAGATGTC 1179
|| || || ||||| ||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct 1225 TT-ATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACTGGAATGAGACCTGGAGATGTC 1283
Query 1180 ATCACTGCCTCAAACGGAAAGACCATTGAGGTCAACAACACAGATGCTGAAGGTCGTCTA 1239
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 1284 ATCACAGCCTCAAACGGAAAGACAATTGAGGTCAACAACACCGATGCTGAAGGTCGACTA 1343
Query 1240 ACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAGATTGTTGACCTC 1299
||||| |||||||||||||| |||||||| ||||| || ||||| ||| ||||||||||
Sbjct 1344 ACACTTGCAGATGCTCTAGTTTATGCTTGCAACCAGGGTGTCGATAAGGTTGTTGACCTT 1403
Query 1300 GCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACTTCAATGGCAGGAATCTATACA 1359
|| || ||||| ||||| ||| |||||||||||||||| ||||||||||| || ||||||
Sbjct 1404 GCAACATTGACTGGGGCTTGTATTATTGCTCTTGGAACATCAATGGCAGGCATATATACA 1463
Query 1360 CCTAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCAGAAAGGAGTGGAGAGAAGCTG 1419
||||| || ||||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 1464 CCTAGTGATAAGCTTGCAAAGGAGGTGATTGCTGCATCAGAGAGGAGTGGAGAGAAGTTA 1523
Query 1420 TGGAGGATGCC-ACTGGAAGAGAGCTATTGGGAGATGATGAAGTCTGGAGTGGCTGATAT 1478
||||| ||||| | |||||||||| || ||||||||||||||||| || ||||| |||||
Sbjct 1524 TGGAGAATGCCGA-TGGAAGAGAGTTACTGGGAGATGATGAAGTCAGGTGTGGCAGATAT 1582
Query 1479 GGTCAACACAGGCGGGCGGGCAGGAGGATCCATCACCGCGGCTCTCTTCTTGAAACAGTT 1538
||| ||||| || || || ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1583 GGTTAACACGGGAGGCCGTGCAGGTGGATCCATCACCGCGGCTCTCTTCTTGAAACAATT 1642
Query 1539 TGTGAGTGAGAAGGT-GCAATGGATGCATATCGACATGGCTGGACCGGTGTGGAACGAGA 1597
||||| ||||| || | | |||||||| || || ||||||||||| |||||||||||||
Sbjct 1643 TGTGAACGAGAATGTTG-AGTGGATGCACATAGATATGGCTGGACCAGTGTGGAACGAGA 1701
Query 1598 AGAAGAA-GTCTGGGACCGGGTTTGGTGTTGCTACGCTTGTTGAATGGGTACAGAAGAAT 1656
||||||| | ||| ||| || ||||| |||||||| || || || ||||||||||| |||
Sbjct 1702 AGAAGAAAG-CTGCGACTGGTTTTGGAGTTGCTACACTCGTGGAGTGGGTACAGAACAAT 1760
Query 1657 TCATCTTCGTGA-ATGAA 1673
|| ||||| | | |||||
Sbjct 1761 TCTTCTTCTTAAGATGAA 1778
> Ahg889026 jgi|Araly1|889026|Al_scaffold_0007_1012
Length=1749
Score = 1404 bits (760), Expect = 0.0
Identities = 1306/1570 (83%), Gaps = 36/1570 (2%)
Strand=Plus/Plus
Query 115 ACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCAC-AAGATCTCGTTCACTGCGAA 173
|||||||| |||||||| | |||||| ||| | || | |||||||| || | | |||
Sbjct 193 ACTCTCGGCCTCACTCAGGCTAACTCCGTTGATCATC-CTAAGATCTCATTTTCCGGGAA 251
Query 174 GGAGATCGATGTAATTGAATGGAAAGGAGACATACTCGTAGTTGGTGTGACAGAGAAGGA 233
||||||||| || | ||||||||||| || ||||||| ||||| |||| ||||| ||
Sbjct 252 GGAGATCGACGTGACGGAATGGAAAGGTGATATACTCGCGGTTGGAGTGATGGAGAAAGA 311
Query 234 CTTA-G-CCAAAGACGGTAACTCAAAGTTTGAGAATCCGAT-CTTG-AGCAAGGTCGATG 289
|| | | || || | ||||| ||||| || || ||||| | || || ||| | ||||
Sbjct 312 --TATGACTAAGGATGCCAACTCCAAGTTCGAAAACCCGATAC-TGAAG-AAGCTTGATG 367
Query 290 CTCACTTAAGTGGACTTTTAGCTCAAGTCTCTTCCGAGGAAGATTTCACTGGGAAACCTG 349
||||||| |||||||||||||| | |||||||| ||||||||||| | ||||||||||
Sbjct 368 CTCACTTGGGTGGACTTTTAGCTGATGTCTCTTCTGAGGAAGATTTTTCCGGGAAACCTG 427
Query 350 GTCAATCGACTGTTCTCAGGCTTCCGGGTTTAGGATCAAAGAGAATCGCTTTGATCGGTC 409
| || | || ||||| |||||||||||| | || |||||| | ||| |||||| ||||
Sbjct 428 GCCAGTATACAGTTCTTAGGCTTCCGGGTCTCGGGTCAAAGCGGGTCGGTTTGATTGGTC 487
Query 410 TTGGACAGTCTGTTTCGTCTCCGGT-GGCTTTTCATAGCCTTGGTGAAGCTGTAGCTACA 468
| ||| | |||| ||| ||||| | |||||||| || || ||||| ||||| ||| ||
Sbjct 488 TAGGAAAATCTGCTTCATCTCC-TTCCGCTTTTCAGAGTCTCGGTGAGGCTGTTGCTGCA 546
Query 469 GTTTCAAAAGCTTCTCAATCTACTAGTGCTGCTA-TTGTGCTTG-CT--TC--A-AGTGT 521
| | | |||||||||||| |||| |||| ||| | |||| || | || || | |||||
Sbjct 547 GCTGCTAAAGCTTCTCAAGCTACCAGTGTTGC-AGTTGTTCTCGCCTCCTCAGAGAGTGT 605
Query 522 TTCTGATGAATCTAAGCTTAGTTCTG-TATCAGCTTTAGCTTCAGGCATAGTACTTGGTT 580
||||||||||||||| || ||||||| | |||||| |||||||||||| ||| |||||||
Sbjct 606 TTCTGATGAATCTAAACTCAGTTCTGCT-TCAGCTATAGCTTCAGGCACAGTGCTTGGTT 664
Query 581 TATTTGAAGATGGTAGGTATAAGTCTGAATCAAAGAAACCATCTTTGAAAGCTGTTGATA 640
| |||||||| | ||||||||||||| ||||||||||||||| | ||| |||| ||||
Sbjct 665 TGTTTGAAGACAGCCGGTATAAGTCTGAGTCAAAGAAACCATCTCTCAAATCTGTGGATA 724
Query 641 TTATTGGATTTGGAACTGGGGCTGAGGTAGAAAAGAAGCTGAAGTATGCTGAAGATGTTT 700
| ||||| ||||| ||||| |||| |||| ||||||| |||||||||||| ||||||
Sbjct 725 TCATTGGCTTTGGCACTGGACCTGAACTAGAGGAGAAGCTTAAGTATGCTGAACATGTTT 784
Query 701 CTTACGGTGTAATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG 760
|||| || ||||||||||||| ||| || |||||||||| |||||||| || || ||||
Sbjct 785 CTTATGGCGTAATTTTCGGGAAAGAACTTGTTAATTCTCCAGCCAATGTTCTCACCCCTG 844
Query 761 CTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCTTCACTGCAA 820
| ||||||||||||||||| |||| ||||||| | ||||||||||||| | |||||||
Sbjct 845 CCGTACTAGCTGAGGAAGCCTCAAATCTGGCTTCCATGTACAGTGATGTCATGACTGCAA 904
Query 821 ACATCTTGAACGAAGAGCAATGCAAAGAGTTGAAGATGGGTTCTTACCTAGCTGTTGCTG 880
||||||||||||| || |||||||||||| ||||||||||||| || || ||||| ||||
Sbjct 905 ACATCTTGAACGAGGAACAATGCAAAGAGCTGAAGATGGGTTCATATCTTGCTGTAGCTG 964
Query 881 CTGCGTCGGCTAATCCTCCTCACTTCATCCACCTTGTCTATAAACCTCCGAATGGCTCTG 940
|||| || |||||||| ||||| |||||||||||| |||| |||||| | | |||| |||
Sbjct 965 CTGCTTCAGCTAATCCACCTCATTTCATCCACCTTATCTACAAACCTTCTAGTGGCCCTG 1024
Query 941 TTAAGACCAAACTTGCTCTTGTTGGAAAAGGATTGACCTTTGACAGTGGTGGCTACAACA 1000
|||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 1025 TTAAAACCAAACTTGCTCTTGTTGGGAAAGGATTGACATTTGACAGCGGTGGCTACAACA 1084
Query 1001 TTAAGACTGGACCTGGC-TGCTCAATTGAGCTCATGAAATTCGACATGGGCGGTTCAGCT 1059
|||||| ||| |||| | || | |||||||||||||||| |||| |||| |||||||||
Sbjct 1085 TTAAGATTGGGCCTGACATGAT-AATTGAGCTCATGAAAATCGATGTGGGAGGTTCAGCT 1143
Query 1060 GCTGTTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGGTTCA- 1118
||||||||||||||||| ||||| |||||| | ||||||||||| ||||||||||| ||
Sbjct 1144 GCTGTTCTTGGCGCTGCAAAAGCCATTGGTCAAATTAAGCCTCCCGGTGTTGAGGTGCAC 1203
Query 1119 TTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATGAGACCTGGAGATGT 1178
||| || || ||||| ||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1204 TTT-ATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACCGGAATGAGACCTGGAGATGT 1262
Query 1179 CATCACTGCCTCAAACGGAAAGACCATTGAGGTCAACAACACAGATGCTGAAGGTCGTCT 1238
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1263 CATCACAGCCTCAAACGGAAAGACAATTGAGGTCAACAACACCGATGCTGAAGGTCGACT 1322
Query 1239 AACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAGATTGTTGACCT 1298
|||||| |||||||||||||| |||||||| ||||| || ||||| ||||||||||||||
Sbjct 1323 AACACTTGCAGATGCTCTAGTCTATGCTTGCAACCAGGGTGTCGATAAGATTGTTGACCT 1382
Query 1299 CGCTACTTTGACCGGGGCCT-GTGTTATTGCTCTTGGAACTTCAATGGCAGGAATCTATA 1357
|| || ||||| |||| || | || ||||||||||| | ||||||||||| || ||||
Sbjct 1383 TGCAACATTGACTGGGG-CTATTATTGTTGCTCTTGGACCATCAATGGCAGGCATGTATA 1441
Query 1358 CACCTAGCGACGAGCTTGCAAAGGAAGTGATTGCTGCATCAGAAAGGAGTGGAGAGAAGC 1417
|| |||| || ||| |||||||||| || | ||||||||||||||||||||| ||||||
Sbjct 1442 CAGCTAGTGATGAGTTTGCAAAGGAGGTAACTGCTGCATCAGAAAGGAGTGGCGAGAAGT 1501
Query 1418 TGTGGAGGATGCC-ACTGGAAGAGAGCTATTGGGAGATGATGAAGTCTGGAGTGGCTGAT 1476
| ||||| ||||| | |||||||||| || ||||||||||||||||| | ||||| |||
Sbjct 1502 TATGGAGAATGCCTA-TGGAAGAGAGGTACTGGGAGATGATGAAGTCAAGTGTGGCAGAT 1560
Query 1477 ATGGTCAACACAGGCGGGCGGGCAGGAGGA-TCCATCACCGCGGCTCTCTTCTTGAAACA 1535
||||| ||| || || || ||||| || |||||||||||||||||||||||||||||
Sbjct 1561 ATGGTTAACTTGGGAGGCCGTGCAGG-TGATTCCATCACCGCGGCTCTCTTCTTGAAACA 1619
Query 1536 GTTTGTGAGTGAGAAGGT-GCAATGGATGCATATCGACATGGCTGGACCGGTGTGGAACG 1594
||||||| | |||||||| | | |||||||| || || ||||||||||| ||||||||||
Sbjct 1620 GTTTGTGTGCGAGAAGGTTG-AGTGGATGCACATAGATATGGCTGGACCAGTGTGGAACG 1678
Query 1595 AGAAGAAGAA-GTCTGGGACCGGGTTTGGTGTTGCTACGCTTGTTGAATGGGTACAGAAG 1653
|||||||||| | ||| ||| || ||||| ||||| || || ||||| |||||||||||
Sbjct 1679 AGAAGAAGAAAG-CTGCGACTGGTTTTGGAGTTGCGACACTCGTTGAGTGGGTACAGAAC 1737
Query 1654 AATTCATCTT 1663
||||| ||||
Sbjct 1738 AATTCTTCTT 1747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581223985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5