BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24210.1
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899756 jgi|Araly1|899756|Al_scaffold_0004_406 2512 0.0
Ahg932440 jgi|Araly1|932440|scaffold_400428.1 2241 0.0
Ahg932445 jgi|Araly1|932445|scaffold_400433.1 658 0.0
Ahg932446 jgi|Araly1|932446|scaffold_400434.1 178 1e-43
> Ahg899756 jgi|Araly1|899756|Al_scaffold_0004_406
Length=1779
Score = 2512 bits (1360), Expect = 0.0
Identities = 1651/1790 (92%), Gaps = 25/1790 (1%)
Strand=Plus/Plus
Query 1 ATGGCCACTC---TCCTGCAAATAGGTTCAGGT-GTGATTTATAGTAATGCCCTTAGGAA 56
|||||||||| | || || ||||||||| | | ||||| |||||||||||| ||||
Sbjct 1 ATGGCCACTCTAGTACTTCAGATAGGTTCATCTCCT-ATTTACAGTAATGCCCTTGGGAA 59
Query 57 GACGCTTCGACGTCCTCAGTCTTCTACATGCATCATAGTGACCGAAACCACACCATGTAA 116
||| |||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||
Sbjct 60 GACTCTTCGACGTCCTCAGTCTTCCACATGCATCATAGTGGCCGAAACCCCGCCATGTAA 119
Query 117 TAAGTCTCCCACAGTTCAGCGTCGTTCTGCGAACTATCAGCCTTCTCGT-TGGGACCATC 175
|||| | |||| |||||| |||||||| ||||||||||||||||||| | ||||||||||
Sbjct 120 TAAGACCCCCATAGTTCATCGTCGTTCCGCGAACTATCAGCCTTCTC-TCTGGGACCATC 178
Query 176 ACCATCTCCTCTCGGTCGAAAATAAATTTGCGAAAGATAAAAG--G-GTACGAGAGAGAG 232
||||||||||||||||||| ||||||| | |||||||||||| | ||| |||||||||
Sbjct 179 ACCATCTCCTCTCGGTCGAGAATAAATATATGAAAGATAAAAGTAGTGTAAGAGAGAGAG 238
Query 233 ATTTGTTGAAGGAAAAAGTGAGAAAGATGCTCAATGATGAGCAA-AAGACTTATCTTGAC 291
||||||||||||||||||||||||||||||| |||||| || || ||||||||| |||||
Sbjct 239 ATTTGTTGAAGGAAAAAGTGAGAAAGATGCTTAATGATAAG-AAGAAGACTTATGTTGAC 297
Query 292 CAATTGGAGTTCATTGACGATCTACAAAAACTCGGGGTTTCTTATCATTTTGAAGCGGAA 351
||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 298 CAATTGGAGTTCATTGATGATCTACAGAAACTCGGGATTTCTTATCATTTTGAAGCGGAA 357
Query 352 ATCGACAACATTTTAACATCTTCTTATAAAAAAGATAGAACAAACATCCAGGAGAGTGAC 411
|| || | |||||||||||||||||| ||||||| ||||||||| ||| ||||||||||
Sbjct 358 ATGGATATCATTTTAACATCTTCTTACCAAAAAGAGAGAACAAACGTCCGGGAGAGTGAC 417
Query 412 CTACATGCCACCGCACTCGAGTTCCGACTTTTCAGGCAACATGGTTTCAATGTTTCAGAA 471
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 418 CTACATGCCACCGCACTCGAATTCCGACTTTTCAGACAACATGGTTTGAATGTTTCAGAA 477
Query 472 GATGTATTCGATGTTTTCATGGAAAA-TTGTGGGAAGTTTGACCGTGATGATATATATGG 530
|||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||
Sbjct 478 GATGTATTCGATGTTTTCAT-GAAAATTTGTGGGAAGTTTGGCAGTGATGATATATATGG 536
Query 531 TTTAATATCTCTTTACGAAGCATCATATCTTTCGACAAAATTGGATA-AAAACCTGCAAA 589
||| |||||||||||||||| || |||||||||||||| | ||||| |||| |||||||
Sbjct 537 TTTCTTATCTCTTTACGAAGCGTCGTATCTTTCGACAAAGTCGGATACAAAA-CTGCAAA 595
Query 590 TATTCATCAGACCTTTTGCTACACAACAACTCAGAGACTTTGTTGATACTCATAGTAATG 649
|| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 596 AATGCATCAGACCTTTTGCAACACAACAACTCAGACACTTTGTTGATACTCATAGTAATG 655
Query 650 AAGATTTTGGGTCGTGTGACATGGTGGAAATTGTGGTCCAAGCGTTGGATATGCCCTACT 709
|| ||| ||| ||||||||||||||||| || ||||||||| |||| |||||||||||||
Sbjct 656 AAAATTGTGGATCGTGTGACATGGTGGAGATGGTGGTCCAAACGTTAGATATGCCCTACT 715
Query 710 ATTGGCAAATGAGAAGGCTATCCACCAGATGGTACATAGATGTGTATGGAAAAAGACAAA 769
|||||| |||||||||| || ||||||| |||||||||||||||||||||| ||||
Sbjct 716 ATTGGCGAATGAGAAGGTTAGACACCAGACGGTACATAGATGTGTATGGAAAGAGAC--- 772
Query 770 ATTATAAGAACCTTGTCGT-CGTTGAATTTGCCAAGATTGATTTCAACATCGTACAAGCT 828
|| | |||||||||||| | | |||||||||||||| |||||||||||||||||||||||
Sbjct 773 ATAACAAGAACCTTGTCCTAC-TTGAATTTGCCAAGCTTGATTTCAACATCGTACAAGCT 831
Query 829 ATTCATCAAGAGGAACTCAAAAACGTTTCCAGCTGGTGGATGGAGACAGGTTTAGGTAAG 888
||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 832 ATTCATCAAGAGGAACTCAAACACGTATCCAGCTGGTGGAGGGAGACAGGTTTAGGTAAG 891
Query 889 CAACTCTACTTTGCAAGAGACAGAATAGTGGAGAATTATTTCTGGACGATTGGACAAATC 948
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 892 CAACTCTACTTTGCAAGAGACAGGATAGTGGAGAATTATTTTTGGACGATTGGACAAATC 951
Query 949 CAAGAGCCTCAATACGGATACGTTCGACAAACAATGACGAAAATAAATGCACTCCTTACT 1008
||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 952 CAAGAGCCTCAATACGGATACGTTCGACAAATAATGACTAAAATAAATGCACTTCTTACT 1011
Query 1009 ACAATTGATGATATCTACGATATCTATGGCACTCTTGAAGAACTTCAGCTTTTCACTGT- 1067
|| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
Sbjct 1012 ACTATTGATGATATCTACGATATCTATGGCACTCTTGAAGAGCTTGAACTTTTCACT-TC 1070
Query 1068 CGCGTTTGAAAACTGGGATATAAATCGTCTTGATGAACTCCCCGAGTACATGAGGTTGTG 1127
|||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1071 CGCGTTTGAAAATTGGGATGTAAATCGTCTTGATGAACTCCCCGAGTATATGAGGTTGTG 1130
Query 1128 TTTTCTTGTTATATACAATGAAGTCAATAGCATTGCATGTGAGATTCTCAGAACTAAAAA 1187
|||||||||| |||||||||||||||||||||||| |||||| ||||| |||| ||||||
Sbjct 1131 TTTTCTTGTTGTATACAATGAAGTCAATAGCATTGGATGTGATATTCTAAGAAATAAAAA 1190
Query 1188 TATCAACGTGATCCCATTCCTCAAAAAATCTTGGACAGATGTATCCAAAGCGTATTTAGT 1247
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1191 TATCAACGTGATCCCATTCCTCAAAAAATCTTGGACAGATGTATGCAAAGCATATTTAGT 1250
Query 1248 AGAAGCAAAGTGGTACAAAAGTGGTCACAAACCAAATTTGGAAGAGTACATGCAAAATGC 1307
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1251 AGAAGCAAAGTGGTACAAAAGTGGGCACAAACCAAATTTGGAAGAGTACATGCAAAATGC 1310
Query 1308 TCGGATTTCAATCTCGTCCCCAACGATATTTGTTCACTTCTACTGCGTATTCTCCGACCA 1367
| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1311 TTGGATTTCAATCTCGGCCCCAACGATATTTGTTCACTTCTACTGCGTATTCTCTGCCCA 1370
Query 1368 GCTCTCTATTCAGGTCTTGGAGACTTTGTCCCAACACCAACAAAACGTCGTCCGATGCTC 1427
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1371 GCTCTCTATTAAGGTCTTGGAGACTTTGTCCGAACACCAACAAAACATCGTCCGAAGCT- 1429
Query 1428 CT-CCTCAGTGTTCCGTCTAGCCAACGACCTTGTAACCTCACCGGATGAATTGGCGAGAG 1486
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CTGCCTCAGTGTTCCGTCTAGCCAACGACCTTGTAACCTCACCGGATGAATTGGCGAGAG 1489
Query 1487 GAGACGTCTGCAAATCCATCCAATGTTACATGAGTGAAACTGGAGCATCAGAGGATAAGG 1546
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1490 GAGACGTCTGCAAATCCATCCAATGTTACATGAGTGAAAATGGAGCATCAGAGGATAAAG 1549
Query 1547 CGCGTTCGCATGTTCGACAGATGATCAATGACTTGTGGGATGAAATGAATTATGAGAAAA 1606
||||| | |||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1550 CGCGTACACATGTTCGGCAGATGATCAACGACTTGTGGGATGAAATGAATTACGAGAAAA 1609
Query 1607 TGGCACATAGCTCTTCGATACTCCATCATGATTTTATGGAAACAGTGATAAATTTGGCAC 1666
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1610 TGGCACATAGCTCTTCGCTACTCCATCATGATTTTATGGAAACAGTGATAAACTTGGCAC 1669
Query 1667 GCATGTCTCAATGCATGTATCAATATGGCGATGGCCATGGCTCTCCCGAAAAAGCCAAAA 1726
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1670 GCATGTCTCAATGCATGTATCAATATGGTGATGGCCATGGCTCTCCTGAAAAAGCCAAAA 1729
Query 1727 TCGTTGATCGTGTCATGTCCTTACTCTTCAATCCGATTCCTTTAGATTGA 1776
||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1730 TCGTTAATCGTGTCATGTCCATAATCTTCAATCCGATTCCTTTAGATTGA 1779
> Ahg932440 jgi|Araly1|932440|scaffold_400428.1
Length=1561
Score = 2241 bits (1213), Expect = 0.0
Identities = 1452/1568 (93%), Gaps = 14/1568 (1%)
Strand=Plus/Plus
Query 234 TTTGTTGAAGGAAAAAGTGAGAAAGATGCTCAATGATGAGCAA-AAGACTTATCTTGACC 292
|||||||||||||||||||||||||||||| |||||| || || ||||||||| ||||||
Sbjct 1 TTTGTTGAAGGAAAAAGTGAGAAAGATGCTTAATGATAAG-AAGAAGACTTATGTTGACC 59
Query 293 AATTGGAGTTCATTGACGATCTACAAAAACTCGGGGTTTCTTATCATTTTGAAGCGGAAA 352
|||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 60 AATTGGAGTTCATTGATGATCTACAGAAACTCGGGATTTCTTATCATTTTGAAGCGGAAA 119
Query 353 TCGACAACATTTTAACATCTTCTTATAAAAAAGATAGAACAAACATCCAGGAGAGTGACC 412
|||| |||||||||||||||||||| ||||||| ||||||||| ||| |||||||||||
Sbjct 120 TCGATAACATTTTAACATCTTCTTACCAAAAAGAGAGAACAAACGTCCGGGAGAGTGACC 179
Query 413 TACATGCCACCGCACTCGAGTTCCGACTTTTCAGGCAACATGGTTTCAATGTTTCAGAAG 472
||||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||
Sbjct 180 TACATGCCACCGCACTCGAATTCAGACTTTTCAGACAACATGGTTTGAATGTTTCAGAAG 239
Query 473 ATGTATTCGATGTTTTCATGGAAAATTGTGGGAAGTTTGACCGTGATGATATATATGGTT 532
|||||||||||| ||||||| |||| ||||||||||||| | ||||||||||||||||||
Sbjct 240 ATGTATTCGATGATTTCATGAAAAAATGTGGGAAGTTTGGCAGTGATGATATATATGGTT 299
Query 533 TAATATCTCTTTACGAAGCATCATATCTTTCGACAAAATTGGATA-AAAACCTGCAAATA 591
| |||||||||||||||| || |||||||||||||| | |||| |||| ||||||| |
Sbjct 300 TCTTATCTCTTTACGAAGCGTCGTATCTTTCGACAAAGTCAGATACAAAA-CTGCAAAAA 358
Query 592 TTCATCAGACCTTTTGCTACACAACAACTCAGAGACTTTGTTGATACTCATAGTAATGAA 651
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGCATCAGACCTTTTGCAACACAACAACTCAGAGACTTTGTTGATACTCATAGTAATGAA 418
Query 652 GATTTTGGGTCGTGTGACATGGTGGAAATTGTGGTCCAAGCGTTGGATATGCCCTACTAT 711
|||| ||||||||||||||||||||| || |||||| || |||| |||||||||||||||
Sbjct 419 GATTGTGGGTCGTGTGACATGGTGGAGATGGTGGTCGAAACGTTAGATATGCCCTACTAT 478
Query 712 TGGCAAATGAGAAGGCTATCCACCAGATGGTACATAGATGTGTATGGAAAAAGACAAAAT 771
|||| |||||||||| || ||||||| ||||||| |||||||||||||| |||| ||
Sbjct 479 TGGCGAATGAGAAGGTTAGACACCAGACGGTACATCGATGTGTATGGAAAGAGAC---AT 535
Query 772 TATAAGAAC-CTTGTCGTCGTTGAATTTGCCAAGATTGATTTCAACATCGTACAAGCTAT 830
| |||||| | |||| | ||||||||||||||| |||||||||| |||||||| |||||
Sbjct 536 AACAAGAACGC-TGTCCTAGTTGAATTTGCCAAGCTTGATTTCAATATCGTACAGGCTAT 594
Query 831 TCATCAAGAGGAACTCAAAAACGTTTCCAGCTGGTGGATGGAGACAGGTTTAGGTAAGCA 890
||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||
Sbjct 595 TCATCAAGAGGAACTCAAACACGTATCCAGCTGGTGGAGGGAGACAGGTTTAGGTAAGCA 654
Query 891 ACTCTACTTTGCAAGAGACAGAATAGTGGAGAATTATTTCTGGACGATTGGACAAATCCA 950
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 655 ACTCTACTTTGCAAGAGACAGGATAGTGGAGAATTATTTTTGGACGATTGGACAAATCCA 714
Query 951 AGAGCCTCAATACGGATACGTTCGACAAACAATGACGAAAATAAATGCACTCCTTACTAC 1010
||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 715 AGAGCCTCAATACGGATACGTTCGACAAATAATGACTAAAATAAATGCACTTCTTACTAC 774
Query 1011 AATTGATGATATCTACGATATCTATGGCACTCTTGAAGAACTTCAGCTTTTCACTGT-CG 1069
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||| | ||
Sbjct 775 TATTGATGATATCTACGATATCTATGGCACTCTTGAAGAGCTTGAACTTTTCACT-TCCG 833
Query 1070 CGTTTGAAAACTGGGATATAAATCGTCTTGATGAACTCCCCGAGTACATGAGGTTGTGTT 1129
|||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 834 CGTTTGAAAATTGGGATGTAAATCGTCTTGATGAACTCCCCGAGTATATGAGGTTGTGTT 893
Query 1130 TTCTTGTTATATACAATGAAGTCAATAGCATTGCATGTGAGATTCTCAGAACTAAAAATA 1189
|||||||| |||||||||||||||||||||||| |||||| ||||| |||| ||||||||
Sbjct 894 TTCTTGTTGTATACAATGAAGTCAATAGCATTGGATGTGATATTCTAAGAAATAAAAATA 953
Query 1190 TCAACGTGATCCCATTCCTCAAAAAATCTTGGACAGATGTATCCAAAGCGTATTTAGTAG 1249
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 954 TCAACGTGATCCCATTCCTCAAAAAATCTTGGACAGATGTATGCAAAGCATATTTAGTAG 1013
Query 1250 AAGCAAAGTGGTACAAAAGTGGTCACAAACCAAATTTGGAAGAGTACATGCAAAATGCTC 1309
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1014 AAGCAAAGTGGTACAAAAGTGGGCACAAACCAAATTTGGAGGAGTACATGCAAAATGCTT 1073
Query 1310 GGATTTCAATCTCGTCCCCAACGATATTTGTTCACTTCTACTGCGTATTCTCCGACCAGC 1369
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1074 GGATTTCAATCTCGGCCCCAACGATATTTGTTCACTTCTACTGCGTATTCTCTGCCCAGC 1133
Query 1370 TCTCTATTCAGGTCTTGGAGACTTTGTCCCAACACCAACAAAACGTCGTCCGATGCTCCT 1429
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 1134 TCTCTATTAAGGTCTTGGAGACTTTGTCCGAACACCAACAAAACGTCGTCCGAAGCTC-T 1192
Query 1430 -CCTCAGTGTTCCGTCTAGCCAACGACCTTGTAACCTCACCGGATGAATTGGCGAGAGGA 1488
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1193 GCCTCAGTGTTCCGTCTAGCCAACGACCTTGTAACCTCACCGGATGAATTAGCGAGAGGA 1252
Query 1489 GACGTCTGCAAATCCATCCAATGTTACATGAGTGAAACTGGAGCATCAGAGGATAAGGCG 1548
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1253 GACGTCTGCAAATCCATCCAATGTTACATGAGTGAAAATGGAGCATCAGAGGATAAAGCA 1312
Query 1549 CGTTCGCATGTTCGACAGATGATCAATGACTTGTGGGATGAAATGAATTATGAGAAAATG 1608
||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1313 CGTTCACATGTTCGGCAGATGATCAACGACTTGTGGGATGAAATGAATTACGAGAAAATG 1372
Query 1609 GCACATAGCTCTTCGATACTCCATCATGATTTTATGGAAACAGTGATAAATTTGGCACGC 1668
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1373 GCACATAGCTCTTCGCTACTCCATCATGATTTTATGGAAACAGTGATAAACTTGGCACGC 1432
Query 1669 ATGTCTCAATGCATGTATCAATATGGCGATGGCCATGGCTCTCCCGAAAAAGCCAAAATC 1728
|||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 1433 ATGTCTCAATGCATGTATCAATATGGTGATGGCCATGGCTCTCCCAAAAAAGCTAAAATC 1492
Query 1729 GTTGATCGTGTCATGTCCTTACTCTTCAATCCGATTCCTTTAGATTGAACTTCATATTG- 1787
|||||||||||||| ||| || | |||||||||||||||||||||||||||||| |||
Sbjct 1493 GTTGATCGTGTCATATCCATAATATTCAATCCGATTCCTTTAGATTGAACTTCAGATTAC 1552
Query 1788 ATTACATT 1795
|||| |||
Sbjct 1553 ATTATATT 1560
> Ahg932445 jgi|Araly1|932445|scaffold_400433.1
Length=869
Score = 658 bits (356), Expect = 0.0
Identities = 509/582 (87%), Gaps = 14/582 (2%)
Strand=Plus/Plus
Query 412 CTACATGCCACCGCACTCGAGTTCCGACTTTTCAGGCAACATGGTTTCAATGTTTCAGAA 471
||||||||||| ||||| || |||| |||||| || |||||||| ||||||||||| |||
Sbjct 255 CTACATGCCACTGCACTAGAATTCCAACTTTTTAGACAACATGGATTCAATGTTTCTGAA 314
Query 472 GATGTATTCGATGTTTTCATGGAAAATTGTGGGAAGTTTGACCGTGATGATATATATGGT 531
||||| |||||||||||||||||||| |||||||||||||| || || ||||| ||| |
Sbjct 315 GATGTGTTCGATGTTTTCATGGAAAACTGTGGGAAGTTTGAGAGTAATAATATAAATGAT 374
Query 532 TTAATATCTCTTTACGAAGCATCATATCTTTCGACAAAATTGGATA-AAAACCTGCAAAT 590
| |||||||||||||||||||| |||||||||||||| | | ||| | || |||||||
Sbjct 375 ATCATATCTCTTTACGAAGCATCGTATCTTTCGACAAAGTCGAATACACAA-CTGCAAAA 433
Query 591 ATTCATCAGACCTTTTGCTACACAACAACTCAGAGACTTTGTTGATACTCATAGTAATGA 650
| |||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 434 ACTCATCAGAACTTTTGCAACACAAAAACTAAGAGACTTTGTTGATACTCATAGTAATGA 493
Query 651 AGATT-T--TGGGTCGTGTGACA-TGGTGGAAATTGTGGTCCAAGCGTTGGATATGCCCT 706
||||| | ||| || ||||||| | ||||| || ||||||||| |||| ||||||||||
Sbjct 494 AGATTGTGGTGGATCATGTGACACT-GTGGAGATGGTGGTCCAAACGTTAGATATGCCCT 552
Query 707 ACTATTGGCAAATGAGAAGGCTAT-CCACCAGATGGTACATAGATGTGTATGGAAAAAGA 765
||||||||| ||||||||| || | |||||||||||||||||||||||||| |||| |||
Sbjct 553 ACTATTGGCGAATGAGAAGACT-TGCCACCAGATGGTACATAGATGTGTATAGAAAGAGA 611
Query 766 CAAAATTATAAGAACCTTGTCGTCGTTGAATTTGCCAAGATTGATTTCAACATCGTACAA 825
| || | |||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 612 C---ATAACAAGAACCTTGTCTTAGTTGAATTCGCCAAGATTGATTTCAACATCGTACAA 668
Query 826 GCTATTCATCAAGAGGAACTCAAAAACGTTTCCAGCTGGTGGATGGAGACAGGTTTAGGT 885
|||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 669 GCTATTCATCAAGAAGAACTCAAATACGTTTCCAGCTGGTGGAGGGAGACAGGTTTAGGT 728
Query 886 AAGCAACT-CTACTTTGCAAGAGACAGAATAGTGGAGAATTATTTCTGGACGATTGGACA 944
|| ||||| | |||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 729 AATCAACTTC-ACTTTGCAAGAGACAGAATAGTGGAGAATTATTTTTGGACTATTGGGCA 787
Query 945 AATCCAAGAGCCTCAATACGGATACGTTCGACAAACAATGAC 986
||||| |||||||||| || |||||||| | || ||||||
Sbjct 788 TATCCACGAGCCTCAATTTGGTTACGTTCGTCGAATAATGAC 829
> Ahg932446 jgi|Araly1|932446|scaffold_400434.1
Length=409
Score = 178 bits (96), Expect = 1e-43
Identities = 125/139 (90%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 1081 TGGGATATAAATCGTCTTGATGAACTCCCCGAGTACATGAGGTTGTGTTTTCTTGTTATA 1140
|||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 144 TGGGATGTAAATCGCCTTGATGAACTTCCCGAGTACATGAGGTTGTGTTTTCTTGTCGTG 203
Query 1141 TACAATGAAGTCAATAGCATTGCATGTGA-GATTCTCAGAACTAAAAATATCAACGTGAT 1199
|||||||||||||||||||||| | |||| | |||||| |||||||||||| ||| ||||
Sbjct 204 TACAATGAAGTCAATAGCATTGGACGTGATG-TTCTCAAAACTAAAAATATAAACATGAT 262
Query 1200 CCCATTCCTCAAAAAATCT 1218
||||||||| |||||||||
Sbjct 263 CCCATTCCTTAAAAAATCT 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71571570355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5