BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24230.1
Length=2996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481279 jgi|Araly1|481279|fgenesh2_kg.4__339__AT2G24230.1 4423 0.0
> Ahg481279 jgi|Araly1|481279|fgenesh2_kg.4__339__AT2G24230.1
Length=2959
Score = 4423 bits (2395), Expect = 0.0
Identities = 2797/2988 (94%), Gaps = 39/2988 (1%)
Strand=Plus/Plus
Query 1 AAAAAGATACTCTTGTCATAATCAGAGGTAGGGGAAGCTTAATATTATATATTAAT-CTA 59
||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 AAAAAGATAGTGTTGTCATAATCAGAGGTAGGGGAAGCTTAATATTATATATTAATAC-A 59
Query 60 TGACAAAAATCCTCCTTTTTCTTGTTTTTATGTCCTTTGGTCTCTCGTGTTCTTGAGAAG 119
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGAC--AAATCCTCCTTTGTCTTGTTTTTATGTCCTTTGGTCTCTCGTGTTCTTGAGAAG 117
Query 120 CACCACAGAGTTAAACAAACACTTTTTCTATCTTCAGATCTCTCCTTAATATTTGTCTTC 179
||||||| || | ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 118 CACCACAAAG-T-------CACTTTTCCTATCTTCAGATCTCTCCTTAATA-TTGTCTTC 168
Query 180 AACTGTTTCTTGCATGAGTACCCTAAAGTAGCTTCAGTGAGATTTTCTTTTTTCTGGAGG 239
||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 169 AACTGTTTCTTGCATGAGTACCCAAAAGTAACTTCAGTGAGATTTTC-TTTTTCTGGAGG 227
Query 240 CAGATTTTGTTGTTTAGCTCCAAGCTTTCTTCAATGGGTCTTGGTCTTGGTTTTTGGGGT 299
||||||||||||||||||| | |||||||| | ||||||||||||||||||
Sbjct 228 CAGATTTTGTTGTTTAGCT-----C--TCTTCAAT--G----GGTCTTGGTTTTTGGGGT 274
Query 300 TATGCATTGTTTCTTTCTCTGTTCTTGAAGCAATCTCATTGCCAAGAACCAAACACAGAT 359
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 275 TATGCATTGATTCTTTCTCTGTTCTTGAAGCAATTTCATTGCCAAGAACCAAACACAGAT 334
Query 360 GGTTTCTTTGTCTCTGAATTC-T-ATAAGCAAATGGGTTTAAGCTCTTCTCAAGCTTATA 417
||||||||||| ||||||||| | | ||| ||||| ||||||||||| ||||||||||||
Sbjct 335 GGTTTCTTTGTATCTGAATTCTTCA-AAG-AAATGAGTTTAAGCTCTGCTCAAGCTTATA 392
Query 418 ACTTCTCTGCTCCTTTTTGTTCATGGCAAGGTTTGTTCTGTGATTCCAAGAATGAGCATG 477
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 393 ACTTCTCTGCTCCTTTTTGTTCATGGCAAGGTTTGTTCTGTGATTCCATGAATGAGCATG 452
Query 478 TGATTATGTTAATTGCTTCTGGAATGAGTTTATCTGGTCAAATCCCTGATAACACAATTG 537
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 453 TGATTGTGTTAATTGCTTCTGGAATGAGTTTATCTGGTCAAATCCCTGATAACACCATTG 512
Query 538 GTAAACTCAGCAAGCTTCAATCTTTGGATCTTAGCAACAACAAAATCTCTGCTTTACCAT 597
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 513 GTAAACTCAGCAAGCTTCAATCTTTGGATCTCAGCAACAACAAAATCTCTGCTTTACCAT 572
Query 598 CTGATTTCTGGAGTTTGAACACTTTGAAGAATCTCAACCTCTCTTTCAACAAGATCTCTG 657
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 573 CTGATTTCTGGAGTTTGAACACTTTGAAGAATCTTAACCTCTCTTTCAACAAGATCTCTG 632
Query 658 GGTCTTTCTCTAGTAATGTTGGCAATTTTGGGCAGCTTGAGTTACTTGATATCTCTTACA 717
|||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 633 GGTCTTTCCCTAGCAATGTTGGCAATTTTGGGCAGCTTGAGTCACTTGATATCTCTCACA 692
Query 718 ACAATTTCTCTGGTGCAATCCCTGAAGCTGTGGATTCTCTTGTTAGTTTGAGAGTCTTGA 777
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 693 ACAACTTCTCTGGTGCAATCCCTGAAGCTGTAGATTCTCTTGTTAGCTTGAGAGTCTTGA 752
Query 778 AGCTTGATCATAATGGGTTTCAGATGTCGATTCCACGAGGACTTCTTGGTTGCCAATCCC 837
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 753 ATCTTGATCACAATGGGTTTCAGATGTCGATTCCACGAGGGCTTCTTGGTTGCCATTCTC 812
Query 838 TGGTTTCTATTGATCTCTCCTCTAACCAGCTTGAAGGGTCTCTTCCTGATGGGTTTGGCT 897
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 813 TGGTTTCTATTGATCTATCCTCTAACCAGCTTGAAGGGTTTCTTCCTGATGGGTTTGGCT 872
Query 898 CTGCATTTCCAAAGCTTGAGACTTTGAGCCTTGCAGGAAACAAGATTCATGGCAGGGACA 957
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CTGCATTTCCAAAGCTTAAAACTTTGAGCCTTGCAGGAAACAAGATTCATGGCAGGGACA 932
Query 958 CAGATTTTGCTGATATGAAATCCATCAGTTTTCTCAACATTTCAGGAAATCAGTTTGATG 1017
| |||||||||||| || ||||||| |||| ||||||||||||||| ||||| ||||| |
Sbjct 933 CTGATTTTGCTGATTTGCAATCCATTAGTTCTCTCAACATTTCAGGGAATCAATTTGAAG 992
Query 1018 GTTCAGTGACAGGTGTGTTCAAGGAGACTTTAGAAGTGGCTGATCTCAGCAAAAACCGGT 1077
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 993 GTTCAGTGACTGGTGTGTTCAAGGAGACTCTAGAAGTGGCTGATCTCAGCAAAAACCGGT 1052
Query 1078 TTCAAGGTCATATCTCATCTCAGGTAGACTCCAACTGGTTTAGTTTGGTTTATCTTGACT 1137
||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1053 TTCAAGGTCATATATCCTCTCAGGTAGACTCCAACTGGTTTAGTTTGATTTATCTTGACT 1112
Query 1138 TGTCTGAGAATGAGCTCAGTGGAG-T-T-ATCAAGAATCTGACACTACTAAAGAAGCTCA 1194
|||||||||||||| ||||||||| | | ||||||||||||||||| |||||||||| |
Sbjct 1113 TGTCTGAGAATGAGATCAGTGGAGATATCTTCAAGAATCTGACACTATTAAAGAAGCTTA 1172
Query 1195 AGCACTTAAATCTAGCTTGGAATAGATTCAACAGAGGAATGTTTCCGAGGATTGAGATGC 1254
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1173 AGCACTTAAATCTAGCTTGGAATAGGTTCAACAGAGGAATGTTTCCGAGGATTGAGATGA 1232
Query 1255 TTTCTGGTTTAGAGTATCTTAACTTGTCAAACACAAATCTTTCTGGTCACATACCTAGAG 1314
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1233 TTTCTGGTTTAGAGTATCTTAACTTGTCAAACACAAATCTTTATGGTCACATACCTAGAG 1292
Query 1315 AGATCTCAAAGCTGAGTGATTTGAGTACACTCGATGTTTCTGGAAACCATCTTGCAGGAC 1374
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 1293 AGATCTCAGAGCTGAGTGATTTGAGTACACTTGATGTTTCTGGTAACCATCTTTCAGGAC 1352
Query 1375 ATATCCCGATTTTGAGTATCAAGAACCTTGTGGCTATCGATGTGTCGAGGAACAATTTGA 1434
||||||| |||||||||||||| ||||| || ||||| ||||| |||||||||||||||
Sbjct 1353 ATATCCCAATTTTGAGTATCAAAAACCTCGTAGCTATTGATGTTTCGAGGAACAATTTGT 1412
Query 1435 CGGGAGAGATACCGATGTCTATCCTTGAGAAGCTCCCTTGGATGGAGAGATTCAACTTCT 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 CGGGAGAGATACCGATGTCTATCCTTGAGAAGCTCCCTTGGATGGAGAGATTCAACTTCT 1472
Query 1495 CTTTCAACAACTTAACATTTTGTTCCGGAAAGTTCTCAGCTGAAACTCTGAACAGATCCT 1554
|||||||||||||||||||||||||||||||||| ||| | |||||||||| || |||||
Sbjct 1473 CTTTCAACAACTTAACATTTTGTTCCGGAAAGTTTTCAACCGAAACTCTGATCACATCCT 1532
Query 1555 TCTTTGGTTCTACAAATAGCTGCCCTATCGCTGCAAACCCAGCACTTTTCAAGAGAAAAA 1614
|||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||
Sbjct 1533 TCTTTGGTTCTACAAATAGCTGCCCTATCGCTGCAAACCCGGCGCTCTTCAAGAGAAGAA 1592
Query 1615 GATCAGTCACTGGAGGACTTAAGCTGGCTTTAGCAGTGACGCTTTCTACGATGTGTTTAC 1674
|||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1593 GATCGGTCACTGGGGGACTCAAGCTGGCTTTGGCAGTGACGCTTTCTACGATGTGTTTAC 1652
Query 1675 TCATAGGAGCATTGATTTTTGTAGCATTTGGCTGCAGAAGGAAAACTAAATCCGGTGAAG 1734
| |||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 1653 TAATAGGAGCATTGATTTTTGTAGCATTTGGCTGCAGAAGGAGACCCAAATCCGGTGAAG 1712
Query 1735 CCAA-AGATCTCTCAGTAAAGGAGGAACAAAGCATTTCAGGTCCATTCTCTTTCCAAACA 1793
|||| | || || || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1713 CCAATA-ATGTCCCATTAAAGTTGGAACAAAGCATTTCAGGTCCATTCTCTTTCCAAACG 1771
Query 1794 GATTCCACTACATGGGTGGCTGATGTGAAGCAAGCAAATGCAGTTCCTGTGGTTATCTTT 1853
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 GATTCTACTACATGGGTGGCTGATGTGAAGCAAGCAAATGCAGTTCCTGTGGTTATCTTT 1831
Query 1854 GAGAAGCCATTGTTGAACATAACGTTTTCGGATCTCTTGTCTGCAACTTCCAACTTCGAC 1913
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1832 GAGAAGCCATTGTTGAACATAACGTTTTCGGATCTCTTGTCTGCGACTTCCAACTTCGAC 1891
Query 1914 AGAGACACTCTCTTAGCGGACGGCAAATTTGGTCCTGTTTATC-GAGGTTTCCTCCCCGG 1972
||||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |||||
Sbjct 1892 AGAGACACTCTCTTAGCAGACGGTAAATTTGGTCCTGTTTA-CAGAGGTTTCCTGCCCGG 1950
Query 1973 TGGGATACATGTAGCTGTAAAAGTTTTGGTTCATGGCTCAACTCTTAGTGACCAAGAAGC 2032
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1951 TGGGATTCATGTAGCTGTAAAAGTTTTGGTCCACGGCTCAACTCTTAGTGACCAAGAAGC 2010
Query 2033 AGCTAGAGAGCTCGAGTTTCTTGGAAGGATCAAGCACCCAAATCTTGTCCCATTAACTGG 2092
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2011 AGCTAGAGAGCTCGAGTTTCTTGGAAGGATCAAGCACCTAAATCTTGTTCCATTAACTGG 2070
Query 2093 ATATTGCATAGCCGGTGATCAAAGGATCGCCATTTACGAGTACATGGAAAACGGTAACTT 2152
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2071 ATATTGCATAGCTGGTGATCAAAGGATAGCCATTTACGAGTACATGGAAAACGGTAACTT 2130
Query 2153 GCAAAACCTGCTTCATGATCTGCCATTTGGAGTTCAGACAACAGATGATTGGACCACGGA 2212
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2131 ACAAAACCTGCTTCATGATCTGCCATTTGGAGTTCAGACAACAGATGATTGGACCACAGA 2190
Query 2213 TACATGGGAAGAAGAAACTGACAATGGAACCCAAAACATAGGGACTGAAGGCCCTGTGGC 2272
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 2191 TACATGGGAAGAAGAAACTGACAATGGAATCCAAAACATAGGGATTGAAGGCCCGGTGGC 2250
Query 2273 GACATGGCGGTTTAGGCACAAGATAGCACTTGGAACTGCCCGAGCATTAGCTTTCCTTCA 2332
||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 2251 AACATGGCGGTTTAGGCACATGATAGCACTTGGAACTGCCCGAGCATTGGCATTCCTTCA 2310
Query 2333 CCACGGTTGTTCACCGCCAATAATCCATAGGGATGTGAAAGCTAGTAGTGTTTATCTTGA 2392
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 2311 CCACGGTTGTTCACCGCCGATGATCCATAGAGATGTGAAAGCTAGTAGTGTTTATCTTGA 2370
Query 2393 CCAGAACTGGGAACCAAGATTATCTGATTTTGGTTTAGCCAAAGTTTTTGGAAATGGTTT 2452
|||||||| ||||||||||||||||||||| |||||||||||||| |||||||| || ||
Sbjct 2371 CCAGAACTTGGAACCAAGATTATCTGATTTCGGTTTAGCCAAAGTCTTTGGAAACGGCTT 2430
Query 2453 GGACGATGAGATTATTCATGGCTCACCTGGTTATCTCCCTCCTGAGTTCTTGCAACCCGA 2512
|||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2431 GGACGATGAGATTACCCGTGGCTCACCCGGTTATCTCCCTCCTGAGTTCTTGCAACCCGA 2490
Query 2513 ACACGAGCTGCCAACACCGAAATCTGACGTCTATTGCTTTGGAGTTGTTCTGTTTGAACT 2572
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 2491 ACACGAGCTGCCAACACCGAAATCCGATGTCTACTGCTTTGGAGTTGTTCTGTTTGAACT 2550
Query 2573 CATGACAGGGAAAAAGCCGATTGAAGATGATTATCTTGATGAGAAAGATACTAACTTGGT 2632
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2551 CATGACAGGGAAAAAGCCGATTGAAGATGATTATCTTGATGAGAAAGATACCAACTTGGT 2610
Query 2633 GAGTTGGGTTAGAAGTTTAGTTAGGAAGAATCAAGCATCAAAAGCTATTGATCCAAAAAT 2692
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2611 GAGTTGGGTTAGAAGTTTGGTTAGGAAGAATCAAGGATCAAAAGCTATTGATCCAAAAAT 2670
Query 2693 CCAAGAGACAGGCTCAGAAGAACAGATGGAAGAAGCTCTCAAGATTGGTTACCTCTGCAC 2752
|||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 2671 ACAAGAGACAGGCTCAGAAGATCAGATGGAAGAAGCTCTCAAGATCGGATACCTCTGCAC 2730
Query 2753 AGCTGATCTTCCTTCAAAGCGGCCAAGTATGCAGCAAGTAGTTGGTCTTCTTAAAGATAT 2812
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2731 AGCTGATCTTCCTTCAAAGCGGCCGAGTATGCAGCAAGTAGTTGGTCTTCTTAAAGATAT 2790
Query 2813 TGAACCAAAATCTAACCAGTGAAACATCACTTTCTGAATCTCTACAACAATGTTCTTTTT 2872
||||| ||| |||| || |||||| ||||||||||||||||| ||| |||||||| |||
Sbjct 2791 CGAACCGAAACCTAATCAATGAAACTTCACTTTCTGAATCTCTGCAAAAATGTTCTCTTT 2850
Query 2873 CCCTTGAAAGTTTTATCTCTTTACCTTTTTC-CAATGTTTTGCTGTTTCCCATTGTTGTA 2931
||||||||||||| || ||||| ||||||| |||||||||||| ||| |||| ||||||
Sbjct 2851 CCCTTGAAAGTTTCATTTCTTTGCCTTTTTTTCAATGTTTTGCTCTTTTCCATGGTTGTA 2910
Query 2932 TATATAAGCTTGTTTGCGTTAACCTCTATATCAAACCTTCTTGCTTCA 2979
|||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 2911 TATATAAGCTTGTTTGCGTTTTCCTCTATCTCAAATGTTCTTGCTTCA 2958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113128027650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5