BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24240.1
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932450 jgi|Araly1|932450|scaffold_400438.1 2109 0.0
Ahg491654 jgi|Araly1|491654|fgenesh2_kg.7__1087__AT4G30940.1 1160 0.0
> Ahg932450 jgi|Araly1|932450|scaffold_400438.1
Length=1363
Score = 2109 bits (1142), Expect = 0.0
Identities = 1291/1364 (95%), Gaps = 5/1364 (0%)
Strand=Plus/Plus
Query 174 CACCTAATTTTCCATTAATGGGTATCTCAAAAGACAGGATCAAATTCAACGTTGGTGGAC 233
||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 4 CACCTAATTTTTCATTGATGGGTATGTCAAAAGATAGGATCAAATTCAACGTTGGTGGAA 63
Query 234 GACTCTTCGAAACGACGGCGACGACGTTAGCAAACGCAGGTCGTGATTCTTTCTTCGGAG 293
|| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 64 GAATTTTCGAAACGACAGCGACGACGTTAGCAAACGCGGGTCGTGATTCTTTCTTCGGAG 123
Query 294 CATTGTTCGACGACGAATGGAATCTTTCACCACTTGAAGATTCCATTCTTTTCGTAGACA 353
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 124 CATTGTTCGACGACGAATGGAATCTTTCACCAC---AAGATTCCATTCGTTTCGTAGACA 180
Query 354 GAAACTCAGATTGCTTCGCAGTTCTTCTTGATCTTCTCCGTACGGGAGACCTTAACGTTC 413
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GAAACTCAGATTGCTTCGCTGTTCTTCTTGATCTTCTCCGTACCGGAGACCTTAACGTTC 240
Query 414 CGGCCAACATCCCTGAGCGTCTCCTTCATAGAGAAGCTTCTTTCTACGGTTTACTTGACC 473
| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGCAAACATACCAGAGCGTCTCCTTCATAGAGAAGCTTCTTTCTACGGTTTACTTGACC 300
Query 474 ATGTACGGACCGCTAAATGGGGTCCGTTTGATGGTAACCGTCTTCGTCTATCGGATTCTG 533
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 301 ATGTACGGACCGCCAAATGGGGTCCGTTTGATGGTAACCGACTTCGTCTCTCGGATTCCG 360
Query 534 TTAAAGGAATTGCTCCCGGAGACGGAACCGCCATCAGGGCAGGTCCTGATGGCGGTTGTT 593
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 361 TTAAAGGAATTGCTCCGGGAGACGGAACTGCCATCAGGGCGGGTCCTGATGGCGGTTGTT 420
Query 594 GCGTCGCGCACGGGAGTGTTGTTCATGTTTTTGATTGGATGTTGGAAGAACATTCTCCGA 653
| || ||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 421 GTGTTGCGCATGGGAGTGTTGTTCATGTGTTTGATTGGATGTTGGAAGAACACTCCCCGA 480
Query 654 TCAACCTTGATTACCAGAGAGTAAACGATGTTGGCTGGATTGATTCAGACAACATCGTAC 713
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAAACCTCGATTATCAGAGAGTAAACGATGTTGGCTGGATTGATTCAGACAACATCGTAC 540
Query 714 TCTCTGCTTGTGAGAAATT-GGGAAGAGGAGATGGAGGAATGGGACTGTTCAGTTCATCT 772
|||||||||| |||| || ||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 541 TCTCTGCTTGCGAGAGGTTAGGG-AGAGGAGAAGGAGGCATGGGACTGTTTAGTTCATCC 599
Query 773 TCCGGTGATCTTCGGTATAAGTTTCAGGTCTGTCATGAGAATCAGGTGAAGAGTTATACA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCCGGTGATCTTCGGTATAAGTTTCAGGTCTGTCATGAGAATCAGGTGAAGAGTTATACA 659
Query 833 GCTGGAGCTTTGAGTTTTTCGCCGGATTATGAGATTTTTGCGAGCTGCAAAGGTCGGAGT 892
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 GCTGGAGCTTTGAGTTTTTCGCCGGATTATGAGATTTTCGCGAGCTGCAAAGGTCGGAGT 719
Query 893 AATGAGTATGGAATCGGAGTTTGGGATCAGATAACTGGAAAGCAAACCGATTTCTTCTAC 952
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 720 AATGAGTACGGAATCGGAGTTTGGGATCAGATAACTGGAAAACAAACAGATTTCTTCTAC 779
Query 953 GAGAGTCCTGGTTGGTCACTTGGTGATGCTGACAAGCTTCAATGGCTGAATGGTAAGAAC 1012
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 780 GAGAGTCCTGGTTGGTCACTTGGTGATGCTGATAAGCTTCAATGGTTGAATGGTAAGAAT 839
Query 1013 TGTCTTCTTGTGGCTACATTGTTTCCAAGAAAGGACAACTGTTACATTAGTTTGTTGGAT 1072
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 840 TGTCTTCTTGTAGCTACATTGTTTCCAAGAAAGGATAACTGTTACATTAGCTTGTTGGAT 899
Query 1073 TTTCGGGACAAGAACATGGTTTGGTCATGGTCGGATATTGGGTCTCCTATGGCGATAGAC 1132
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 900 TTTCGGGACAAGAACATGGTTTGGTCTTGGTCGGATATCGGGTCTCCTATGGCTATAGAC 959
Query 1133 GAGAAGAGAGTGAGAGATGCAATAGCTATGGAAGATAGCAATTCGATTTGTGTGGTGAAT 1192
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 GAGAAGAGAGTGAGAGATGCAATAGCTATGGAAGATAGCAATTCGATTTGCGTGGTGAAT 1019
Query 1193 GAGTTTGAGGATTTGGGGTTTATTGATCTGAGGATGTATGGAGGAAGCGTGAGGTGGAGT 1252
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1020 GAGTTTGAGGATTTGGGGTTTATTGATCTGAGAATGTATGGAGGAAGCGTTAGGTGGAGT 1079
Query 1253 TCGAGAAGTAAACTGATGAAGAGTAAGATGCCTGATGAGCCTTGTTACCCGAAACTAGCT 1312
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1080 TCGAGAAGTAAATTGATGAAGAGTAAGATGCCTGACGAGCCTTGTTACCCGAAACTGGCT 1139
Query 1313 TTGCATGAAGGCCAGCTTTTCTCATCAATGAATGATTCTATCTCTGTGTTCTGTGGACCA 1372
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1140 TTGCACGAAGGCCAGCTTTTCTCATCGATGAATGATTCTATCTCTGTGTTTTGTGGACCA 1199
Query 1373 GACTGGGTCTTAACTTCTAGGCTAAGAAGAAGCTATGGTGGCTCAATCTGTGATTTCTCC 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GACTGGGTCTTAACTTCTAGGCTAAGAAGAAGCTATGGTGGCTCAATCTGTGATTTCTCC 1259
Query 1433 ATTGGTGGCGACCGCCTTTTTGCATTGCATAGCGAGGAGAATGTGTTTGATGTCTGGGAG 1492
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1260 ATTGGTGGCGATCGCCTTTTCGCATTGCATAGCGAAGAGAATGTGTTTGATGTCTGGGAG 1319
Query 1493 ACTCCGCCTTGTCCGATCATATAATTCACTACCTTAATACTCTG 1536
|||||||||||||||||||| | ||||||| ||| |||||||||
Sbjct 1320 ACTCCGCCTTGTCCGATCATCTGATTCACTTCCTCAATACTCTG 1363
> Ahg491654 jgi|Araly1|491654|fgenesh2_kg.7__1087__AT4G30940.1
Length=1799
Score = 1160 bits (628), Expect = 0.0
Identities = 1125/1360 (83%), Gaps = 53/1360 (4%)
Strand=Plus/Plus
Query 189 TAATGGGTATCTCAAAAGACAGGATCAAATTCAACGTTGGTGG-ACGACTCTTCGAAACG 247
|||||||| | ||||| ||||| |||||||||||||||||||| | || |||||||||||
Sbjct 165 TAATGGGTTTATCAAATGACAGAATCAAATTCAACGTTGGTGGTA-GAATCTTCGAAACG 223
Query 248 ACGGCGACGACGTTAGCAAACGCAGGTCGTGATTCTTTCTTCGGAGCATTGTTCGACGAC 307
||||||||||| | || ||||| ||||| | ||| |||||||||||||| ||||||||
Sbjct 224 ACGGCGACGACCCTCGCTAACGCTGGTCGCGGTTCCTTCTTCGGAGCATTATTCGACGA- 282
Query 308 GAA-TGGAATCTTTCACCACTTGAAGATTCCATTCTTTTCGTAGA-CAGAAACTCAGATT 365
|| ||||||||||| | || || || | | || ||| | || | | ||| ||||||
Sbjct 283 AAATTGGAATCTTTCGCAACCCGACGA-T-C--TC--TTCATCGATC-GGAACCCAGATT 335
Query 366 GCTTCGCAGTTCTTCTTGATCTTCTCCGTACGGGAGACCTTAACGTTCCGGCC-AACATC 424
||||||| |||||||| ||||| ||||| || |||||||| ||| ||| || || |||
Sbjct 336 GCTTCGCCGTTCTTCTCGATCTCCTCCGAACAGGAGACCTCAAC-ATCCCACCTAATATC 394
Query 425 CCTGAGCGTCTCCTTCATAGAGAAGCTTCT-TTCTACGGTTTACTTGACCA-TGTACGGA 482
|| |||||||||||||| | |||||| | |||||||| ||| | ||||| | |||| |
Sbjct 395 CCGGAGCGTCTCCTTCACAAAGAAGC-AATGTTCTACGGCTTAATCGACCACT-TACGAA 452
Query 483 CCGCTAAA-TGGGGTCCGTTT-GATGGTAACCG--TCTTCGTCTATCGGATTCTGTTAAA 538
|||| ||| ||||| || ||| || |||||| | || | ||| || | || || |
Sbjct 453 CCGC-AAAGTGGGGACC-TTTCGACGGTAACAGACTCCACCTCTCTC-G-CTCCGTCACC 508
Query 539 GGAATTGCTCCCGGAGACGGAACCGCCATCAGGGCAGGTCCTGATGGCGGTTGTTGCGTC 598
|| || ||||||||||||||||| || || || || ||||| |||||||| || || |||
Sbjct 509 GGCATAGCTCCCGGAGACGGAACGGCGATAAGAGCTGGTCCGGATGGCGGATGCTGTGTC 568
Query 599 GCGCACGGGAGTGTTGTTCATGTTTTTGATTGGATG-TTGGAAGAACATTCTCCGATCAA 657
|| |||||||| ||||| || || |||||||||||| || || || ||| | |||| ||
Sbjct 569 GCTCACGGGAGCGTTGTCCACGTGTTTGATTGGATGCTT-GAGGAGCATCCGACGATTAA 627
Query 658 CCTTGATTACCAGAGAGTAAACGATGTTGGCTGGATTGATTCAGACAACATCGTACTCTC 717
||||||||||| ||||| |||||||| || ||||||||||| | ||||| || |||||
Sbjct 628 TCTTGATTACCAAAGAGTGAACGATGTGGGTTGGATTGATTCCGGTAACATTGTTCTCTC 687
Query 718 TGCTTGTGAGAAATTGGGAAGAGGAGATGGAGGAATGGGACTGTTCAGTTCATCTTCCGG 777
||||||||||| ||| |||||||||||||||||||||||| |||| || |||||||| ||
Sbjct 688 TGCTTGTGAGAGATTAGGAAGAGGAGATGGAGGAATGGGATTGTTTAGCTCATCTTCTGG 747
Query 778 TGATCTTCGGTATAAGTTTCAGGTCTGTCATGAGAATCAGGTGAAGAGTTATACAGCTGG 837
||| ||| |||||||||||||||| ||||||| |||||| | |||||||||| |||||
Sbjct 748 TGAGCTTAGGTATAAGTTTCAGGTGAGTCATGATAATCAGATTAAGAGTTATAGTGCTGG 807
Query 838 AGCTTTGAGTTTTTCG-CCGGATTATGAGATTTTTGCGAGCTGCAAAGGTCGGAGTAATG 896
||||||||| |||| | || |||| |||| ||| ||||||||||||| | || ||||
Sbjct 808 AGCTTTGAG-TTTTAGTCCTGATTCCAAGATCTTTACGAGCTGCAAAGGAAGAAGCAATG 866
Query 897 AGTATGGAATCGGAGTTTGGGATCAGA-TAACTGGAAAGCAAAC-CGATTTCTTCTACGA 954
|||||||||| |||||||||||||| | ||| |||||||| ||| |||||||| |||||
Sbjct 867 AGTATGGAATTGGAGTTTGGGATCAAATTAA-TGGAAAGC-AACTAGATTTCTTTTACGA 924
Query 955 GAGTCCTGGTTGGTCACTT-GGTGATGCTGACAAGCTTCAATGGCTGAATGGTAAGAACT 1013
||||||||||||||| || || |||||||| ||||| |||||| ||| ||||||||| |
Sbjct 925 GAGTCCTGGTTGGTC-TTTAGGAGATGCTGATAAGCTGCAATGGTTGAGTGGTAAGAATT 983
Query 1014 GTCTTCTTGTGGCTACATTGTTTCCAA-GAAAGGACAACTGTTACATTAGTTTGTTGGAT 1072
| |||||||| ||||| |||||||||| |||| || || ||||| ||||| |||||||||
Sbjct 984 GCCTTCTTGTAGCTACTTTGTTTCCAAGGAAA-GATAATTGTTATATTAGCTTGTTGGAT 1042
Query 1073 TTTCGGGACAAGAACATGGTTTGGTCATGGTCGGATATTGGGTCTCCTATG--GCGATAG 1130
|| ||||||||||||||||| ||||| ||||| ||||| |||| | || || || |
Sbjct 1043 TTCCGGGACAAGAACATGGTCTGGTCTTGGTCTGATATCGGGT-TTCT-TGCAACGGCCG 1100
Query 1131 ACGAGAAGAGAGTGAGAGATGCAATAGCTATGGAAGATAGCAATTCGATTTGTGTGGTGA 1190
| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 1101 AGGAGAAGAGAGTGAGAGATGCGATAGCCATGGAAGAGAGCAATTCGATTTGTGTGGTGA 1160
Query 1191 ATGAGTTTGAGGATTTGGGGTTTATTGATCTGAGGATGTATGGAGGA---AGC-GTG--A 1244
|||||||||||||| | ||||||||||||||||||||| |||||||| || ||| |
Sbjct 1161 ATGAGTTTGAGGATCTAGGGTTTATTGATCTGAGGATGGATGGAGGAGGGAGTAGTGTGA 1220
Query 1245 GGTGGAGTTCGAGAAGTAAACTGATGAAGAGTAAGATGCCTGATGAGCCTTGTTACCCGA 1304
|||||||||| || || | ||||||| || |||||||||||||||||||||||||| |
Sbjct 1221 GGTGGAGTTCTAGGAGCAGGTTGATGAAAAGCAAGATGCCTGATGAGCCTTGTTACCCTA 1280
Query 1305 AACTAGCTTTGCATGAAGGCCAGCTTTTCTCATCAATGAATGATTCTATCTCTGTGTTCT 1364
|||| |||||||| ||||||||||| ||||| || ||||||||||| ||||||||||| |
Sbjct 1281 AACTTGCTTTGCACGAAGGCCAGCTCTTCTCGTCTATGAATGATTCCATCTCTGTGTTTT 1340
Query 1365 GTGGACCAGACTGGGTCTTAACTTCTAGGCT-AAGAAGAAGCTATGGTGGCTCAATCTGT 1423
||||| |||||||||| || ||||||||| | || |||||||||||||||||| ||||||
Sbjct 1341 GTGGATCAGACTGGGTTTTGACTTCTAGGTTGAA-AAGAAGCTATGGTGGCTCCATCTGT 1399
Query 1424 GATTTCTCCATTGGTGGCGACCGCCTT-TTTGCATTGCATAGCGAGGAGAATGTGTTTGA 1482
||||||||||||||||| || || || ||||||||||| || |||||||||||||||||
Sbjct 1400 GATTTCTCCATTGGTGGGGATCGG-TTGTTTGCATTGCACAGTGAGGAGAATGTGTTTGA 1458
Query 1483 TGTCTGGGAGACTCCGCCTTGTCCGATCATATAATT-CAC 1521
||| |||||||||| |||| ||| ||||| | ||| |||
Sbjct 1459 TGTGTGGGAGACTCTGCCTCCTCCCATCATCTGATTTCAC 1498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63039355475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5