BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24250.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320235 jgi|Araly1|320235|fgenesh1_pm.C_scaffold_4000292 941 0.0
Ahg932451 jgi|Araly1|932451|scaffold_400439.1 706 0.0
Ahg932839 jgi|Araly1|932839|scaffold_400827.1 344 9e-94
Ahg932847 jgi|Araly1|932847|scaffold_400835.1 309 3e-83
> Ahg320235 jgi|Araly1|320235|fgenesh1_pm.C_scaffold_4000292
Length=1146
Score = 941 bits (509), Expect = 0.0
Identities = 797/929 (86%), Gaps = 48/929 (5%)
Strand=Plus/Plus
Query 272 AAAGCAAAGACTTGTGCTGCACCCTGGAGAAGGTCCCTTTGTTCCTCTTTAGAGTTCTAA 331
|||||||||| | || |||||||| ||||||||||||||||||||||||||| | | |
Sbjct 251 AAAGCAAAGA-AT-TG-TGCACCCTAGAGAAGGTCCCTTTGTTCCTCTTTAGACTCCGAG 307
Query 332 CTCCTCCTGATGCTGCTGATGCTTCCTCCGAATATTTTCTGGGA-GGATTAGGCCAAGAT 390
||||| | ||| | |||||| | || || |||||| | ||| ||| |||||| ||||
Sbjct 308 CTCCT-C--ATG--G-TGATGC-TGCT--GAGTATTTTATTGGAGGGA-TAGGCCGAGAT 357
Query 391 AAGTCAAATGATCATGTGGAGCTTCCATCTCCTCTTCAGTGCTCAGTGAAAGTCAATG-T 449
||||| |||||||| | |||||||||||||||||||||||||||||||||||||| | |
Sbjct 358 GAGTCAGATGATCATCTCGAGCTTCCATCTCCTCTTCAGTGCTCAGTGAAAGTCAA-GAT 416
Query 450 TCCAGGAACTGAGCCAATTTTGATGAACATGCTTGACTGCCAGA-TCATCCCTCTGGGCC 508
||||||||||||||||| ||||||||||| || ||||| |||| || || || | ||||
Sbjct 417 TCCAGGAACTGAGCCAACCTTGATGAACATACTCGACTGTCAGATTC-TCTCTTTAGGCC 475
Query 509 ATAAGTACAGATTGATGATCGGTTGCAATCCTGAAGAATAC--A-GTGCAG-CTTTTCTT 564
|| |||||||| ||||||||||||| |||| |||| | | | ||| | ||||||||
Sbjct 476 ATCAGTACAGA---ATGATCGGTTGCATTCCTAAAGATTGCGGAGGTG-TGTCTTTTCTT 531
Query 565 CCGCTAAACGAACAAGGAGGAGGAGGCGAATTCG-T-TGCGC-TCCTCGACTGCACTGAT 621
||||| | |||||||| |||||| ||||| | | ||| | ||||| |||||||| |
Sbjct 532 CCGCT--A--AACAAGGA--AGGAGGAGAATTTGTTGTGCTCATCCTCAACTGCACT-A- 583
Query 622 TTGTTT--TTGGTGTTAAGAAGTACTGAAATGAGATGGATTCG-GCTTGAGAAACCCTCA 678
||||| ||||||||||||||| ||||||||||||||| | |||| || ||| ||||
Sbjct 584 ATGTTTGGTTGGTGTTAAGAAGTGCTGAAATGAGATGGA-GGGAGCTTAAGGAACTCTCA 642
Query 679 ACTGCTTCATGTAAGGAGTTATTCACTTTTAGAGGAAGGTTCTATGCAACTTTCTTTAAT 738
|||||| |||||| |||||||||||||||| |||| || || |||||| |||||||||||
Sbjct 643 ACTGCTGCATGTAGGGAGTTATTCACTTTTCGAGGCAGATTTTATGCATCTTTCTTTAAT 702
Query 739 GGGGACACGTTCGTTATCGATCCTTCTTCGCTGGAAGCGACTCCCCTAACACCTCATATC 798
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 703 GGGGACAAGTTCGTTATCGATCCTTCTTCGCTGGAAGCGACTCCCCTAACACCTCATAAC 762
Query 799 GACTCCAACTTTCTGGTTCCATCTGGCAATGAGGAGCTTTTCCTGGTTAAGACAGACTTC 858
|| ||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 763 GAATCCAACTTTTTGGTTCCTTCTGGCAATGATGAGCTTTTCCTGGTTAAAACAGACTTC 822
Query 859 CTAAGATGTAGAGTAAGTAGGCTAGATGAGGAGGCTGCTGAATGGGTTGAGGTCAGCGAT 918
| || ||||||||| |||||||||||||||||||||| | ||||||| || |||||||||
Sbjct 823 CCAACATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTAAATGGGTCGAAGTCAGCGAT 882
Query 919 TTGGGAGACCGTGTTTTGTTTCTTGGTGGACACCTGGGGAATTTCTACTGCTCCGCTAAG 978
||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||
Sbjct 883 TTGGGAGACCGTGTTTTGTTTATTGGTGGACACCAGGGAAATTTCTGCTGCTCCGCTAAG 942
Query 979 GAGCTTCCTCATGGTTGTGGTTTGACTGGGGACTCGATTTTGTTCACCGTTGGGTC-ACG 1037
||||||||||| ||||||||||| |||||| ||||||||||||||||| ||||| | |||
Sbjct 943 GAGCTTCCTCAGGGTTGTGGTTTAACTGGGAACTCGATTTTGTTCACCCTTGGG-CGACG 1001
Query 1038 CAATGTAACTTACCCCTATAAATATGGAGTACATACAAATAAAAGAAAGGCTGAAGACAA 1097
||||||||||| ||| ||||||||||||||||||| | || | |||| || |||||| |
Sbjct 1002 CAATGTAACTTTCCCTTATAAATATGGAGTACATA-A--TACAGGAAATGCAGAAGACGA 1058
Query 1098 TATCAATTGTTGGAGATCCTCAAGGGAGAATCGTGTGTTGTTCCGCAACAGATATGATCC 1157
||||||||||||||||||||||| ||||||||||||| || ||| ||||| |||| |||
Sbjct 1059 TATCAATTGTTGGAGATCCTCAATGGAGAATCGTGTGATGATCCTCAACAAATATTTTCC 1118
Query 1158 GGTCCT-GTCTTTCCGGGTTGAACGCTAG 1185
|||||| | |||||| |||||||||||||
Sbjct 1119 GGTCCTTG-CTTTCCAGGTTGAACGCTAG 1146
Score = 219 bits (118), Expect = 6e-56
Identities = 164/186 (88%), Gaps = 3/186 (2%)
Strand=Plus/Plus
Query 73 AAGAAGATATCAACATCATCGATAATGCCAGACTGGTCTCAGCTCCCTGAAGAGCTACTT 132
||||||| ||||||| ||||||||| |||||||| |||||||||||| |||||| ||||
Sbjct 22 AAGAAGACATCAACAACATCGATAAAGCCAGACTTGTCTCAGCTCCCGGAAGAGTTACTG 81
Query 133 CACATTATCTCAACGCATCTAGAGGATCACTATTTCGATGCTGTTCATGCCCGCTCTGTT 192
||| ||||||| ||||||||| | || ||| |||||||| ||||||||| |||||||||
Sbjct 82 CACCTTATCTCGACGCATCTA-AAGA--ACTGTTTCGATGTTGTTCATGCTCGCTCTGTT 138
Query 193 TGCCGCTCATGGCGATCCACATTTCCATTTCCTTCTTCTCTATTACGCCAAAGTTACTCT 252
||| ||| ||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 139 TGCAGCTTGTGGCGATCCACATTTCCATTTCCTTCTTCCCTATTACGCCAAAGCTATTCT 198
Query 253 CTTCCC 258
||||||
Sbjct 199 CTTCCC 204
> Ahg932451 jgi|Araly1|932451|scaffold_400439.1
Length=1171
Score = 706 bits (382), Expect = 0.0
Identities = 931/1181 (79%), Gaps = 97/1181 (8%)
Strand=Plus/Plus
Query 69 GAAAAAGAAGATATCAACATCATCGATAATGCCAGACTGGTCTCAGCTCCCTGAAGAGCT 128
||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 38 GAAGAAGAAGACATCAACATCATCGATAATGCCAGAATGGTCTCTTCTCCCTGAAGAGCT 97
Query 129 ACTTCACATTATCTCAACGCATCTAGAGGATC-ACTATTTCGATGCTGTTCATGCCCGCT 187
||| ||||||| ||| || || | || | ||| |||| ||| ||||||||| || |
Sbjct 98 ACTGCACATTA--TCATCG-ATAAACTTGA-CAACTGTTTCAATGTTGTTCATGCTCGGT 153
Query 188 CTGTTTGCCGCTCATGGCGATCCACATTTCCATTTCCTTCTT-CTCTATTACGCCAAAGT 246
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 154 CTGTTTGCCGCTCATGGCGATCCACATTTCCATTTCCTTCTTGC-CTATTACGCCCAAGT 212
Query 247 TACTCTCTTCCCGCT-TTC-C-C-TTTA-G----AAA-GCAAAGACTTGTGCTGCACCCT 296
|||||||||||| | ||| | | ||| | ||| |||||||||||| | ||||||
Sbjct 213 TACTCTCTTCCCA-TGTTCACTCATTTCCGTCGCAAAAGCAAAGACTTGT--T-CACCCT 268
Query 297 GGAGAAGGTCCCTTTGTTCCTCTTTAGAGT-TCTAACTCCTCCTGATGCTGCTGATGCTT 355
|||||| |||||||||| |||||||||| || ||||||| ||||||| ||| ||
Sbjct 269 CGAGAAGATCCCTTTGTTTCTCTTTAGAGCCTC-AACTCCT---GATGCTG---ATG-TT 320
Query 356 CCTCCGAATATTTTCTGGGAGGATTAGGCCAAGATAAGTCAAATGATCATGTGGAGCTTC 415
|| || |||||| |||||||| |||||| |||||| |||||||||||| |||||||||
Sbjct 321 GCT--GAGTATTTTATGGGAGGAATAGGCCGAGATAAATCAAATGATCATATGGAGCTTC 378
Query 416 CATCTCCTCTTCAGTGCTCAGTGAAAGTCAATGTTCCAGGAACTGAGCCAATTTTGATGA 475
||||||| ||||| || ||||||||||| || | |||||| |||| |||| |||||||
Sbjct 379 CATCTCCCCTTCAATGTTCAGTGAAAGTGAAACTCCCAGGATCTGATCCAACCTTGATGA 438
Query 476 ACATGCTTGACTGCCAGATCATCCCTCTGGGCCATAAGTACAGATTGATGATCGGTTGCA 535
|||| || |||| | | ||| ||| ||||||| || |||||||| |||| | |||||||
Sbjct 439 ACATTCTCGACTACAATATCCTCCATCTGGGCTATCAGTACAGAATGAT--T-GGTTGCA 495
Query 536 ATCCTGAAGAATACA--G-TGCAGCTTTTCTTCCGCTAAACGAACAAGGAGGAGGAGGCG 592
||||||| || |||| | || |||||||||||||||||| || ||||||||| ||
Sbjct 496 ATCCTGATGATTACAAAGGTGTGGCTTTTCTTCCGCTAAACAAAGAAGGAGGAG-AG--- 551
Query 593 AATTCGTTGCGCTCCTCGACTGCACT-GATTTGTTTTTGGTGTTAAGAAGTACTGAAATG 651
||||||| ||| ||| ||| | || | ||| | || |||||||| |||| ||||||||
Sbjct 552 --TTCGTTGTGCTTCTCAACTACTCTAGTTTTCTGTT-GGTGTTAACAAGTGCTGAAATG 608
Query 652 AGATGGATTCGGCTTGAGAAAC--CCTCAACTGCTT-CATG-TAAGGAGTTATTCACTTT 707
| |||| ||||||||||| | ||| | | || | || | | | ||| |||||||
Sbjct 609 GGGTGGAAGCGGCTTGAGAA-CGTCCT-ATTTT-TTGCGTGCTT-GCATTTAATCACTTT 664
Query 708 TAGAGGAAGGTTCTATGCAACTTT-CTTTAATGGGGACAC-GTTCGTTATCGATCCTTCT 765
|||||| || || ||||||||||| | || || || || ||| ||||||||||||| |
Sbjct 665 TAGAGGCAGATTTTATGCAACTTTTCATTCC-GGAGAAACTGTT-GTTATCGATCCTTAT 722
Query 766 TCGCTGGAAGCGACTCCCCTAACACC-TCATATCG-ACTCCA--ACT-T-TCTGGTTCCA 819
|| ||||| | |||| ||| || ||| ||| || ||| || | ||||||||||
Sbjct 723 TCACTGGAGGTGACTTTCCTGTTGCCCTCACCTCGGACGCCAGTACACTATCTGGTTCCA 782
Query 820 TCTGGCAATGAGGAGCTTTTCCTGGTT-AAG-A--CAG---A-CT-TCC-TAAG--A--- 864
| ||| ||||| || ||||||||||| ||| | | | || | ||| |
Sbjct 783 TTTGGTAATGATGAACTTTTCCTGGTCGAAGTAATCTTCCCAACTGTTGGTAAATTAACA 842
Query 865 TGTAGAGTAAGTAGGCTAGATGAGGAGGCTGCTGAATGGGTTGAGGTCAGCGATTTGGGA 924
|||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 843 TGTAGAGTCAGTAGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGGTCAGCGATTTGGGT 902
Query 925 GACCGTGTTTTGTTTCTTGGTGGACACCTGGGGAATTTCTACT-GCTCCGCTAAGGAGCT 983
|||||||| |||||| | ||||| ||| |||| ||| ||| || |||| ||| |||||||
Sbjct 903 GACCGTGTATTGTTTGTCGGTGGGCACTTGGGAAATATCT-CTTGCTCGGCTCAGGAGCT 961
Query 984 TCCTCATGGTTGTGGTTTGACTGGGGACTCGATTTTGTTCACCGTTGGGTCACGCAATGT 1043
||||||||||| || | |||| ||||||||||||||||| ||||||| |||||||
Sbjct 962 TCCTCATGGTT-TGA---G--TGGGAACTCGATTTTGTTCACCAATGGGTCAGGCAATGT 1015
Query 1044 AAC-TTACCCCTATAAATATGGAGTACATACAAATAAAAGAAAGGCTGAAGACAATATCA 1102
||| || ||||||||||||||||||||||||| |||| || |||||| || ||
Sbjct 1016 AACATT-CCCCTATAAATATGGAGTACATACAG------GAAATGCAGAAGACGATCTCG 1068
Query 1103 ATTGTTGGAGATCCTCAAGGGAGAATCGTGTGTTGTTCCGCAACAGATATGATCCGGTCC 1162
|||||||||||||||||| |||| | |||||| || ||| ||||| || | ||||||||
Sbjct 1069 ATTGTTGGAGATCCTCAATGGAGGACCGTGTGGTGATCCTCAACAAATCTTTTCCGGTCC 1128
Query 1163 T-GTCTTTCCGGGTTGAACGCTAGGCCGCAAATTCTCACTT 1202
| | ||||| ||||||| |||||| || | |||||| |||
Sbjct 1129 TTG-CTTTCAAGGTTGAATGCTAGGACGTAGATTCTCGCTT 1168
> Ahg932839 jgi|Araly1|932839|scaffold_400827.1
Length=1181
Score = 344 bits (186), Expect = 9e-94
Identities = 608/799 (76%), Gaps = 79/799 (10%)
Strand=Plus/Plus
Query 87 ATCATCGATAATGCCAGACTGGTCTCAGCTCCCTGAAGAGCTACTTCACATTATCT-CAA 145
|||||| || ||||| ||||||||||||||||| || |||||||| || |||||| |||
Sbjct 49 ATCATCAATGATGCCTGACTGGTCTCAGCTCCCGGATGAGCTACTAAACCTTATCTCCAA 108
Query 146 CGCATCTAGAGGATC-ACTATTTCGATGCTGTTCATGCCCGCTCTGTTTGCCGCTCATGG 204
| |||| ||| | ||| ||| |||| | ||||||| || ||||||||||| || |||
Sbjct 109 -GAATCT---GGA-CAACTGTTTTGATGTTCTTCATGCTCGTTCTGTTTGCCGTTCGTGG 163
Query 205 CGATCCACATTTCCATTTCCTTCTT-CTCTATTACGCCAAAGTTACTCTCTTCCCGC--T 261
||||| || ||||| ||||||| || | |||||||||| ||||||||||||||||| |
Sbjct 164 CGATCAACGTTTCCCTTTCCTTGTTGC-CTATTACGCCCGAGTTACTCTCTTCCCGCTTT 222
Query 262 -------TTCCCTTTAGAAAGCAAAGACTTGTGCTGCACCCTGGAGAAGGTCCCTTTGTT 314
|||||||| | |||| ||||||| | |||||||| |||||| ||| ||||||
Sbjct 223 CGCCGACTTCCCTTTTGTAAGCGAAGACTT-T--TGCACCCTCGAGAAGATCCATTTGTT 279
Query 315 CCTCTTTAGAGTTCTAACTCCTCCTGATGCTGCTGATGCTTCC-TCCGAATATTTTCTGG 373
||||| |||||||| || || |||| |||||| | | | || |||| ||||||||||
Sbjct 280 CCTCTATAGAGTTCGAA--CC-CCTGCTGCTGC-G-T--TACCATCCGCGTATTTTCTGG 332
Query 374 GAGGATTAGGCCAAGATAAGTCAAATGATCATGTGGAGCTTCCATCTCCTCTTCAGTGCT 433
||||| |||| | |||| ||||| | |||||| |||||||||||||||||||||||||||
Sbjct 333 GAGGAATAGGTCGAGATGAGTCAGAGGATCATATGGAGCTTCCATCTCCTCTTCAGTGCT 392
Query 434 CAGTGAAAGTCAATGTTCC-AGGAACTGAGCCAATTTTGATGAACAT-GCTTGACTGCCA 491
|||||| ||| || | || |||| |||| || | ||||||||||| | | | ||||||
Sbjct 393 CAGTGAGAGTGAAAAT-CCGAGGATCTGATCCTACCTTGATGAACATTG-TCGGCTGCCA 450
Query 492 GATCATCCCTCTGGGCCAT-AAGTACAGATTGATGATCGGTTGCAATCCTGAAGAATACA 550
||| |||||||||| || || |||||| ||||| ||||| |||||||| |||
Sbjct 451 GATTGTCCCTCTGGGATATCAA-TACAGAATGATG---GGTTGGGATCCTGAAAAATTG- 505
Query 551 GTGCAGCTTTTCTTCCGCTAAACGAACAAGGAGGAGGAGGCGAATTCGTTGCGCTCCTCG 610
| ||| | | | | | | | || ||||||| ||||| |||| |||||||
Sbjct 506 G-GCAACAGAT-TACAGG-AG--G-----GG-GGAGGAGAAGAATTTGTTGTGCTCCTCA 554
Query 611 ACTGCACTGA---TTTGTTTTTGGTGTTAAGAAGTACTGAAATGAGATGGATTCGGCTTG 667
||| |||| | ||||| | | |||||||||| ||||||||||||||||| ||||
Sbjct 555 ACTACACTAAAAATTTGTAT--G-TGTTAAGAAGCACTGAAATGAGATGGATGAAGCTTA 611
Query 668 AGA-AACCCTCA-ACTGCTTCATG-TAAGGAGTTATTCACTTTTAGAGGAAGGTTCTATG 724
|| ||| ||| | ||||||||| | ||| ||| || |||||||||| || || ||||
Sbjct 612 AGGTAACA-TCAGA-TGCTTCATGCTC-GGATTTAGTCGCTTTTAGAGGCAGATTTTATG 668
Query 725 CAAC-TTTCTTTAATGGGGACACGTTCGTTATCGATCCTTCTTCGCTGGAAGCG-ACTCC 782
|| | ||||| || ||||||| ||| || ||||||||| ||| || || || |||||
Sbjct 669 CAGCCTTTCTC-AACGGGGACATTTTCATTTTCGATCCTTATTCAATGCAA-CGGACTCC 726
Query 783 CCTAACACC-TCAT-A---TCGAC--TC---CAACTT-TCTGGTTCCATCTGGCAATGAG 831
||| || || | | ||||| || ||| || |||| ||||||||||||||||
Sbjct 727 CCTGGTGCCCTC-TGAGCCTCGACGATCAAGCAA-TTATCTGATTCCATCTGGCAATGAT 784
Query 832 GAGCTTTTCCTGGTTAAGA 850
|||||||| |||||| |||
Sbjct 785 GAGCTTTTTCTGGTTGAGA 803
> Ahg932847 jgi|Araly1|932847|scaffold_400835.1
Length=1263
Score = 309 bits (167), Expect = 3e-83
Identities = 831/1131 (73%), Gaps = 128/1131 (11%)
Strand=Plus/Plus
Query 102 AGACTGGTCTCAGCTCCCTGAAGAGCTACTTCACATTATCT-CAACGCATCTAGAGGATC 160
|||||||||||||||||||||||||||||| |||||||||| | | | |||| || || |
Sbjct 112 AGACTGGTCTCAGCTCCCTGAAGAGCTACTACACATTATCTACGA-GAATCTGGAAGA-C 169
Query 161 ACTATTTCGATGCTGTTCATGCCCGCTCTGTTTGCCGCTCATGGCGATCCA-CATTTCCA 219
| |||||||| | | ||||| || ||||| |||| | | |||||||||| | |||||
Sbjct 170 --TGTTTCGATGTTATCCATGCTCGGTCTGTCTGCCACCCGTGGCGATCCATC-TTTCCC 226
Query 220 TTTCCTTCTT-CTCTATTACGC-CAAAGTTACTCTCTTCCCGCTTTC-CC---TT---TA 270
|||||||||| | |||||||| ||| |||| ||||||||| | ||| || || |
Sbjct 227 TTTCCTTCTTGC-CTATTACGTACAA-GTTATTCTCTTCCCTCGTTCGCCAAGTTCCCTC 284
Query 271 G-AAA-GCAAAGACTTGTGCTGCACCCTGGAGAAGGTCCCTTTGTTCCTCTTTAGAGTTC 328
| ||| |||||| || | ||||||||| || ||| ||||| ||||| | |||||||| |
Sbjct 285 GCAAAAGCAAAGG-TT-T-CTGCACCCTCGAAAAGTTCCCTATGTTCTTTTTTAGAGTCC 341
Query 329 -TAACTCCTCCTGATGCTGCTGATGCTT-CCTCC-GAATATTTTCTGGGAGGATTAGGCC 385
| ||||| ||| ||||| || | || ||| | || | |||| |||||||| || ||
Sbjct 342 GTG-CTCCTGCTGTTGCTGATGG-G-TTGCCTTCTGAGTTTTTTGTGGGAGGAATAAACC 398
Query 386 AAGATAAGTCAAATGATCATGTGGAGCTTCCATC-TCCTCTTCAGTGCTCAGTGAAAG-T 443
||||||| || | |||||| || | |||||||| ||| |||||||| || || |||| |
Sbjct 399 GAGATAAGCCAGAGGATCATATGCAACTTCCATCATCC-CTTCAGTGTTCTGT-AAAGGT 456
Query 444 CAATGTTCC-AGGAACTGAGCCAATTTTGATGAACATGCTTGACTGC-CAGAT-CATCCC 500
|| | ||| |||| |||| || | |||||||||| || || | | ||||| | ||||
Sbjct 457 TAA-GATCCCAGGATCTGATCCGACCCTGATGAACATTCTCGA-TACTCAGATTC-TCCC 513
Query 501 TCTGGGCCATAAGTACAGA-TTGAT-GATCGGT-TGCA-A-TCCT-G--AAGAA-TA-CA 550
||| ||| || |||||| | || || | | || | | | || | | || || | ||
Sbjct 514 TCTAGGCTATCAGTACAAAATT-ATCGGTTGGGATCCCGACTCATTGGCAACAAGTTTCA 572
Query 551 G---TGCAGCTTTTCTTCCGCTAAACGAACAAGGA-GGAGGAGGCGAATTCGTTGCGCTC 606
| || |||||||||||| |||||| || ||| |||||| ||||| |||| |||
Sbjct 573 GAGGTGTAGCTTTTCTTCCACTAAAC-AA---GGACGGAGGAAAAGAATTTGTTGTGCTT 628
Query 607 CTCGACTGCACTGATTTGTTT-TTGGTGTTAAGAAGTACTGAAATGAGATGGATTCGGCT 665
||| || | || || ||| ||||||||||||||| ||||||||| ||||| |||||
Sbjct 629 ATCGGCTACTCTCATGA-TTTGTTGGTGTTAAGAAGTGTTGAAATGAGGTGGATGCGGCT 687
Query 666 TGAGAAACCCTCAACTGCTT-CATGTAAGGAGT-TATTCACTTTTAGAGG-AAGGTTCTA 722
||||||| |||||| ||| | || ||| | | || ||||||||| ||| || || ||
Sbjct 688 TGAGAAAACCTCAAGAGCTGAC-TGCAAGCA-TATAGTCACTTTTAAAGGCAAATTT-TA 744
Query 723 TGCAA-CTTTCTTTAATGGGGACACGTTCGTTATCGATCCTTCTTCGCTGGAAGCGACTC 781
|||| |||| || || ||||| || ||||||||||||| |||||||||||| ||||
Sbjct 745 TGCAGTCTTTATT-AACGGGGATGTTTTTGTTATCGATCCTTATTCGCTGGAAGCAACTC 803
Query 782 CCCTAACACC-TCATA---TC-GAC-TC-CA-A-CTTTCTGGTTCCATCTGGCAATGAGG 832
|||| | || || | || ||| || || | || ||| ||||| ||||||||||| |
Sbjct 804 CCCTGATGCCCTCGGAGCGTCTGACCTCACAGAACTATCTTGTTCCTTCTGGCAATGATG 863
Query 833 AGCTTTTCCTGGTT-A-AGA--CAGAC-TTCCTA--AGATGTAG-AG--T-----AAGT- 876
| || ||||||||| | ||| || | ||| | || |||| | | ||||
Sbjct 864 AACTGTTCCTGGTTGAGAGAATCAT-CGTTCGTGGTAG-TGTAATACAATTTTGCAAGTT 921
Query 877 AGGC-T--AGA-TGAGGAGGCT-GCTGA--ATG--GGT---TG-A--G-G-TCAGCGATT 919
|| | | ||| |||| ||||| | ||| | | ||| || | | | ||| |||||
Sbjct 922 AG-CATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTGAATGGATCGTGGTCACCGATT 980
Query 920 TGGGAGACCGTGTTTTGTTTCTTGGTGGACA-CCTGGGGAATTTCT-ACTGCTCCGCTAA 977
||||||| ||||| ||||| |||| ||| || ||| ||| || | ||||| |||||
Sbjct 981 TGGGAGATCGTGTATTGTTAATTGG---ACAACC-GGGAAATAGCTCA-TGCTCAGCTAA 1035
Query 978 GGAGCTTCCTCATGGTTGTGGTTTGACTGGGGACTCGATTTTGTTCACCGTTGGG-TCAC 1036
|||||||||| ||||||| ||| ||| |||| |||| || ||||||||| || | |
Sbjct 1036 GGAGCTTCCTGATGGTTGCGGTGTGAGTGGGAACTCAATGTTGTTCACCAATGAAAT-AT 1094
Query 1037 GCAATGTAACTTACCCCTATAAATATGGAGTACATACAAATAAAAGAAAGGCTGAAGACA 1096
||||| ||||||| ||||||||||||||||| ||||| |||| | ||||||
Sbjct 1095 TCAATGAAACTTACTCCTATAAATATGGAGTAAATACAG------GAAACTCAGAAGACG 1148
Query 1097 ATATCAATTGTTGGAGATCCTCAAGGGAGAATCGTGTGTTGTTCCGCAACA 1147
| ||| || ||||||||||||||| |||| | ||||| | ||| |||||
Sbjct 1149 ACCTCAGTTTTTGGAGATCCTCAAGAGAGACTAGTGTGACGATCCTCAACA 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5