BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24255.1
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932456 jgi|Araly1|932456|scaffold_400444.1 1005 0.0
Ahg932574 jgi|Araly1|932574|scaffold_400562.1 372 5e-102
Ahg932842 jgi|Araly1|932842|scaffold_400830.1 353 2e-96
Ahg932563 jgi|Araly1|932563|scaffold_400551.1 339 5e-92
Ahg932845 jgi|Araly1|932845|scaffold_400833.1 230 3e-59
Ahg320235 jgi|Araly1|320235|fgenesh1_pm.C_scaffold_4000292 182 9e-45
Ahg932561 jgi|Araly1|932561|scaffold_400549.1 152 7e-36
Ahg932848 jgi|Araly1|932848|scaffold_400836.1 113 3e-24
Ahg932840 jgi|Araly1|932840|scaffold_400828.1 73.1 5e-12
> Ahg932456 jgi|Araly1|932456|scaffold_400444.1
Length=921
Score = 1005 bits (544), Expect = 0.0
Identities = 750/844 (89%), Gaps = 35/844 (4%)
Strand=Plus/Plus
Query 286 TTGTTCATGCTCGCTCTGTTTGCAGCTTGTGGCGATCCACATTTCCTTTGTCTCCCTTGT 345
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| | |
Sbjct 75 TTGTACATGCTCGCTCTGTTTGCAGCTTGTGGCGATCCACACTTCCTCTGTCTCCCGTAT 134
Query 346 TACGCCCAAGTTACTCTCTTCCCTCGTTCAACGAATTCCCTTCAGAAAGCAAAAACATGT 405
||||||||||||||||||||||| | ||| ||| ||||||| ||||||| ||| | ||
Sbjct 135 TACGCCCAAGTTACTCTCTTCCCGCATTCGGCGACTTCCCTTTAGAAAGC--AAAGA-GT 191
Query 406 GCACCCTCGAGAAGGTCCATCTCCTGATATTGCTGATGATCAGCTTTCCGATGCTCTTCA 465
|| | | | |||||| |||||||||||||||||||||||||||||||||
Sbjct 192 ----CC-C----A-----A-CTCCTGCTATTGCTGATGATCAGCTTTCCGATGCTCTTCA 236
Query 466 ATGTTTAGTGAACGTGAAGATCCCAGCATCTATTCCAAAAAAGATCATCCCTTTGGGCCA 525
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 237 ATGTTTAGTGAAAGTGAAGATCCCAGCATCTGTTCCAAAAAAGATCATCCCTTTGGGCCA 296
Query 526 TAAGTACAGAATGATCGGTTGGGAATATAATCGCGCGACTTTTCTTCGGCTAGACAAGGA 585
||||||||||||||||||||||||||||||||| | | | ||||||||| ||||||||||
Sbjct 297 TAAGTACAGAATGATCGGTTGGGAATATAATCGTGTGGCCTTTCTTCGGTTAGACAAGGA 356
Query 586 GGG-AAGAAGAGGAGAATTTGTTGTGCTTCTCGAAGT-CTCTGACACTTTGCTGGTGTTA 643
||| || ||||||||||||||||||||||||| || | |||| | |||||||||||||
Sbjct 357 GGGTAA-AAGAGGAGAATTTGTTGTGCTTCTCAAA-TACTCTTTCGGTTTGCTGGTGTTA 414
Query 644 ACAAGTGCTGAAATGAGGTGGAAGCAGCTTGAGAACGTCCCATATACTATATGCGTTGAT 703
| |||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||
Sbjct 415 AAAAGTGCTGAAATGAGGTGGAAGCAGCTTGAGAACGTCCCAAATGCTAGATGCTTTGAT 474
Query 704 ATAGTCACTTTTAGAGGCAGATTTTATGCACTTTTTCTTTCAGGACAAATCGT-CGTTAT 762
||||||||||||||||||||||||||||||| ||||||||||||| |||| | ||||||
Sbjct 475 ATAGTCACTTTTAGAGGCAGATTTTATGCACATTTTCTTTCAGGA-AAATTTTTCGTTAT 533
Query 763 CGATCCTTATTCGCTGGAGGTGACTCTTCTGTTGTCCTCACCTCAGGACCC-G--CGAGA 819
|||||||||||| |||||||||||||| || ||| ||||||||||||| | | ||||
Sbjct 534 CGATCCTTATTCACTGGAGGTGACTCTCCTATTGCCCTCACCTCAGGAGTCTGAGCGAGG 593
Query 820 ATTACGGTCTCTGGTTCCATATGGCAAAGATGAACTTTTCCTGGTTGAGGTAATCATCCC 879
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 ATTACAGTCTCTGGTTCCATATGGCAAAGATGAACTTTTCCTGGTTGAGGTAATTATCCC 653
Query 880 A-AATGAT-GTTGTAATAGACTTTAGTCGGTTAGCTCGTAGAGTGAGGAGGGTAGATGAG 937
| || ||| || ||||||||||| ||||||||| | |||| |||||||||| ||||||||
Sbjct 654 AGAA-GATCGT-GTAATAGACTTGAGTCGGTTAACCCGTATAGTGAGGAGGCTAGATGAG 711
Query 938 AAGGCTGGTAAATGGGTTGAGGTCGGTGATTTGGGAGACTGTGTATTGTTACTTGGAAAT 997
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 712 GAGGCTGGTAAATGGGTTGAGGTCAGTGATTTGGGAGACTGTGTATTGTTGCTTGGAAAT 771
Query 998 CTCTCTTGCTCGGCTAAGGAATTTCCTCGGGGTTTTGGTTTGACTGA-GAACGCAGTTTT 1056
||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 772 CTCTCTTGCTCAGCTAAGGAATTTCCTCATGGTTTTGGTTTGAC-GAAGAACGCAGTTTT 830
Query 1057 GTTCGGCGATCAGTCAGGCAATGCATTTTTATACTATAAAC-AAAGTGCGGTAAAAGATC 1115
|||| |||| |||||||| |||||||||||||||||||| ||| || |||||||||||
Sbjct 831 GTTCACCGATAAGTCAGGCCATGCATTTTTATACTATAAAAGAAA-TGTGGTAAAAGATC 889
Query 1116 TCAA 1119
||||
Sbjct 890 TCAA 893
> Ahg932574 jgi|Araly1|932574|scaffold_400562.1
Length=1138
Score = 372 bits (201), Expect = 5e-102
Identities = 453/568 (80%), Gaps = 44/568 (8%)
Strand=Plus/Plus
Query 521 GGCCATAAGTACAGAATGATCGGTTGGGAA--TATA-A-T-C----GCGCGACTTTTCTT 571
|||||| |||| ||| |||||||||||||| || | | | | ||| | ||||||||
Sbjct 423 GGCCATCAGTATAGATTGATCGGTTGGGAACCTAAAGATTACAGAGGCGTGGCTTTTCTT 482
Query 572 CGGCTAGACAAGGAGGGAAGAAG-AGGAGAATTTGTTGTGCTTCTCGAAGT-CTCTGACA 629
| ||| ||||||||||||| || ||||||||| |||||| ||||| || | | || |||
Sbjct 483 CTCCTAAACAAGGAGGGAAG-AGAAGGAGAATTCGTTGTGATTCTC-AATTACACTAACA 540
Query 630 CTTTGCTGGTGTTAACAAGTGCTGAAATGAGGTGGAAGCAGCTTGAGAACGTCCCATATA 689
|||| |||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct 541 TTTTGATGGTGTTAACAAGTGCGGAAATGAAGTGGAAGCGGCTTGAGAACGTCCCATATG 600
Query 690 CTATATGCGT-TGATATAGTCACTTTTAGAGGCAGATTTTATGCACT-TTTTCTTTCAGG 747
|||||||| | ||| |||||||||||||||| |||||||||||| | |||| || ||
Sbjct 601 CTATATGC-TCAGATTTAGTCACTTTTAGAGGAAGATTTTATGCA-TCCTTTC-TT-AGC 656
Query 748 ACAAAT-C-GTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTTCT-GTTGTCCTCACC 804
| |||| | |||||||||||||||||||||||||||||||||| || | || |||||||
Sbjct 657 AGAAATACTTTCGTTATCGATCCTTATTCGCTGGAGGTGACTCT-CTTGATGCCCTCACC 715
Query 805 TCAGGACCCGCGAGAATTACGGTCTCTGGTTCCATATGGCAAAGATGAACTTTTCCTGGT 864
||| | || | | || || | | |||| ||| |||||| ||||||||||| || ||
Sbjct 716 TCAAAAGCCACTA-AACTA---TAT--GGTTGCATCTGGCAATGATGAACTTTTTCTAGT 769
Query 865 TGAGGTAATCATCCCAAATGATGTTGTAATAGACTTTAGTCGGTT-AGC-TCGTAGAGTG 922
|||||||| ||||| |||| || | ||||||| ||||| ||||| | | | ||| ||||
Sbjct 770 TGAGGTAACCATCCTAAATTTTGATATAATAGATTTTAGCCGGTTCA-CAT-GTATAGTG 827
Query 923 AGGAGGGTAGATGAGAAGGCTGGTAAATGGGTTGAGGTCGGTGATTTGGGAGACTGTGTA 982
|| ||| |||||||| ||| ||||||||||||||||||| ||||||||| || ||||
Sbjct 828 AGTAGGCTAGATGAGGAGGGTGGTAAATGGGTTGAGGTCACCGATTTGGGAAACCGTGTG 887
Query 983 TTGTT-A-------CTT-GGAAATCTCTCTTGCTCGGCTAAGGAATTTCCTCGGG-GTTT 1032
||||| | ||| |||||| |||||||||||||||||||| ||||| | |||
Sbjct 888 TTGTTTATTGGAAACTTTGGAAATGTCTCTTGCTCGGCTAAGGAACTTCCT-GATAGTTG 946
Query 1033 TGGTTTGACTGAGAACGCAGTTTTGTTC 1060
|||| ||| || |||| || | ||||||
Sbjct 947 TGGTCTGAGTGGGAACTCAATCTTGTTC 974
Score = 158 bits (85), Expect = 1e-37
Identities = 134/156 (86%), Gaps = 9/156 (6%)
Strand=Plus/Plus
Query 274 ACTGTTTCGATGTTGTTCATGCTCGCTCTGTTTGCAGCTTGTGGCGATCCACATTTCC-T 332
|||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |
Sbjct 85 ACTGTTTCGATGTTGTTCATGCTCGCTCTGTTTGCAACTCGTGGCGATCCACGTTTCCCT 144
Query 333 TTG-T-CTC-CCTTGTTACGCCCAAGTTACTCTCTTCCCT-CGTTCAACGAATTCCCT-T 387
|| | || ||| ||||||||||||||||||||||| | | ||| |||| ||| || |
Sbjct 145 TTCCTTCTTGCCTA-TTACGCCCAAGTTACTCTCTTCC-TACTTTCGACGAGTTCACTCT 202
Query 388 CAGAAAGCAAAAACATGTGCACCCTCGAGAAGGTCC 423
| ||||||||| || | |||||||||||||||||||
Sbjct 203 C-GAAAGCAAAGACTTATGCACCCTCGAGAAGGTCC 237
> Ahg932842 jgi|Araly1|932842|scaffold_400830.1
Length=1184
Score = 353 bits (191), Expect = 2e-96
Identities = 459/582 (79%), Gaps = 44/582 (8%)
Strand=Plus/Plus
Query 507 AGATCATCCCTTTGGGCCATAAGTACAGAATGATCGGTTGGGAA--TATA-A-T-C---- 557
||||| || || | |||||| |||| ||| |||||||||||||| || | | | |
Sbjct 453 AGATCCTCTCTCTAGGCCATCAGTATAGATTGATCGGTTGGGAACCTAAAGATTACAAAG 512
Query 558 GCGCGACTTTTCTTCGGC-TAGACAAGGAGGGAAGAAG-AGGAGAATTTGTTGTGCTTCT 615
||| | ||||||||| || || ||||||||||||| || ||| ||||| |||||| ||||
Sbjct 513 GCGTGGCTTTTCTTCCGCTTA-ACAAGGAGGGAAG-AGAAGGGGAATTCGTTGTGATTCT 570
Query 616 CGAAGT-CTCTGACACTTTGCTGGTGTTAACAAGTGCTGAAATGAGGTGGAAGCAGCTTG 674
| || | | || || |||| |||||||||||||||| ||||||| |||||||| |||||
Sbjct 571 C-AATTACACTAACGTTTTGATGGTGTTAACAAGTGCGGAAATGAAGTGGAAGCGGCTTG 629
Query 675 AGAACGTCCCATATACTATATGCGT-TGATATAGTCACTTTTAGAGGCAGATTTTATGCA 733
|||| ||||||||| |||||||| | ||| |||||||||||||||| || |||||||||
Sbjct 630 AGAATGTCCCATATGCTATATGC-TCGGATTTAGTCACTTTTAGAGGTAGGTTTTATGCA 688
Query 734 -CTTTTTCTTTCAGGACAAAT-C-GTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTT 790
| |||| || || | |||| | |||||||||||||||||||||||||||||||||||
Sbjct 689 GC-CTTTC-TT-AGCAGAAATACTTTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTT 745
Query 791 CTGTTGTCCTCACCTCAGGACCCGCGAGAATTACGGTCTCTGGTTCCATATGGCAAAGAT 850
|| || |||||||||| | | | | || || ||| |||| ||| |||||| |||
Sbjct 746 CTAATGCCCTCACCTCATAAGCAACTA-AACTA---TCT--GGTTGCATCTGGCAATGAT 799
Query 851 GAACTTTTCCTGGTTGAGGTAATCATCCCAAATGATGTTGTAATAGACTTTAGTCGGTT- 909
||||| ||| |||||||||||| |||||||||| || |||||||| ||||| |||||
Sbjct 800 GAACTCTTCTTGGTTGAGGTAACCATCCCAAATTTTGAGGTAATAGATTTTAGCCGGTTC 859
Query 910 AGC-TCGTAGAGTGAGGAGGGTAGATGAGAAGGCTGGTAAATGGGTTGAGGTCGGTGATT 968
| | | | | |||||| ||| |||||||| ||| | |||||||| |||||||| ||||
Sbjct 860 A-CAT-GCATAGTGAGTAGGCTAGATGAGGAGGATAGTAAATGGATTGAGGTCACCGATT 917
Query 969 TGGGAGACTGTGTATTGTT-A-----C--TT-GGAAATCTCTCTTGCTCGGCTAAGGAAT 1019
|||||||| |||| ||||| | | || |||||| ||||||||||||||||||||
Sbjct 918 TGGGAGACCGTGTGTTGTTTATTGGACACTTTGGAAATGTCTCTTGCTCGGCTAAGGAAC 977
Query 1020 TTCCTCGG-GGTTTTGGTTTGACTGAGAACGCAGTTTTGTTC 1060
||||| | |||| |||| ||| | |||| || || |||||
Sbjct 978 TTCCT-GATGGTTGTGGTCTGAGGGGGAACACAATTCTGTTC 1018
> Ahg932563 jgi|Araly1|932563|scaffold_400551.1
Length=552
Score = 339 bits (183), Expect = 5e-92
Identities = 361/442 (82%), Gaps = 31/442 (7%)
Strand=Plus/Plus
Query 636 TGGTGTTAACAAGTGCTGAAATGAGGTGGAAGCAGCTTGAGAACGTCCCATATACTATAT 695
|||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 24 TGGTGTTAACAAGTGCGGAAATGAAGTGGAAGCGGCTTGAGAACGTCCCATATGCTATAT 83
Query 696 GCGT-TGATATAGTCACTTTTAGAGGCAGATTTTATGCACT-TTTTCTTTCAGGACAAAT 753
|| | ||| |||||||||||||||| |||||||| ||| | |||| || || | ||||
Sbjct 84 GC-TCGGATTTAGTCACTTTTAGAGGAAGATTTTACGCA-TCCTTTC-TT-AGCAGAAAT 139
Query 754 -C-GTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTTCTGT-TGTCCTCACCTCAGGA 810
| || ||||||||||||||||||||||||||||||| || | || ||||||||||| |
Sbjct 140 ACTTTCCTTATCGATCCTTATTCGCTGGAGGTGACTCTCCT-TATGCCCTCACCTCAGAA 198
Query 811 CCCGCGAGAATTACGGTCTCTGGTTCCATATGGCAAAGATGAACTTTTCCTGGTTGAGGT 870
|| | | || || ||| |||| ||| |||||| |||||||||||||| ||||||||
Sbjct 199 GCCACTA-AACTA---TCT--GGTTGCATTTGGCAATGATGAACTTTTCCTTGTTGAGGT 252
Query 871 AATCATCCCAAATGATGTTGTAATAGACTTTAGTCGGTT-AGC-TCGTAGAGTGAGGAGG 928
|| |||||||||| || ||||||||| ||||| ||||| | | | ||| |||||| |||
Sbjct 253 AACCATCCCAAATTTTGATGTAATAGATTTTAGCCGGTTCA-CAT-GTATAGTGAGTAGG 310
Query 929 GTAGATGAGAAGGCTGGTAAATGGGTTGAGGTCGGTGATTTGGGAGACTGTGTATTGTT- 987
|||||||| ||| ||||||||||||||||||| ||||||||| || |||| || ||
Sbjct 311 CTAGATGAGGAGGGTGGTAAATGGGTTGAGGTCACCGATTTGGGAAACCGTGTCTTCTTT 370
Query 988 A-----C--TT-GGAAATCTCTCTTGCTCGGCTAAGGAATTTCCTCGG-GGTTTTGGTTT 1038
| | || |||||| |||||||||||||||||||||||||| | |||| |||| |
Sbjct 371 ATTGGACACTTTGGAAATGTCTCTTGCTCGGCTAAGGAATTTCCT-GATGGTTGTGGTCT 429
Query 1039 GACTGAGAACGCAGTTTTGTTC 1060
|| || |||| || ||||||||
Sbjct 430 GAGTGGGAACTCAATTTTGTTC 451
> Ahg932845 jgi|Araly1|932845|scaffold_400833.1
Length=1174
Score = 230 bits (124), Expect = 3e-59
Identities = 399/523 (76%), Gaps = 54/523 (10%)
Strand=Plus/Plus
Query 567 TTCTTCGGCTAGACAAGGAGGGAAGAAGAGGAGAATTTGTTGTGCTTCTC-G-AAGTCTC 624
|||||| |||| ||||||||||| || |||||| ||||||||||||| || | | ||||
Sbjct 499 TTCTTCCGCTAAACAAGGAGGGAGGAGGAGGAGGATTTGTTGTGCTTATCGGCTATTCTC 558
Query 625 -TGACACTTTGCTGGTGTTAACAAGTGCTGAAATGAGGTGGAAGCAG-CTTGAGAACGTC 682
|| | |||| ||||||||| ||||||||||| ||| |||| || | |||||||| |
Sbjct 559 ATG--A-TTTGTTGGTGTTAAAAAGTGCTGAAAGGAGATGGATGC-GTCTTGAGAA-AAC 613
Query 683 C-CATATA-CTA-TATGCGT-TGATATAGTCACTTTTAGAGGCAGATTTTATGCACTT-T 737
| || ||| ||| | ||| | | ||||||||||||||||||||||||||||||| || |
Sbjct 614 CTCA-ATAGCTACT-TGC-TCGGGTATAGTCACTTTTAGAGGCAGATTTTATGCA-TTCT 669
Query 738 TTCTTT-CAGG-ACAAATCGTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTTCT-GT 794
|||| | || ||| | ||||||||||||||||||||||||| | ||||| || |
Sbjct 670 TTCTCAACGGGGACATTT--TCGTTATCGATCCTTATTCGCTGGAAGCGACTCC-CTTGA 726
Query 795 TGTCCT--CA-CCTC-AGGACCCGCGAGAATTACGGTCTCTGGTTCCA-TATGGCAAAGA 849
|| ||| || |||| | | | | | ||||| ||| ||| ||| | |||||| ||
Sbjct 727 TGCCCTTGCAGCCTCTAAG-CTCAATA-AATTA---TCT--GGT-CCAATCTGGCAATGA 778
Query 850 TGAACTTTTCCTGGTTGAGGTAATCATCCCAAATGATGTTGTAATAGACTTTAGTCGGTT 909
||||||||| || || |||| || | ||||| ||| || |||||||| ||||| |||||
Sbjct 779 TGAACTTTTTCTTGTAGAGGCAACCCTCCCAGATGCTGAAGTAATAGAATTTAGCCGGTT 838
Query 910 AGC-TCGTAGAGTGAGGAGGGTAGATGAGAAGGCTGGTAAATGGGTTGAGGTCGGTGATT 968
| | | | |||||||| ||| |||||||| |||||||| |||||||| ||| | ||||
Sbjct 839 AACAT-GCAGAGTGAGTAGGCTAGATGAGGAGGCTGGTGTATGGGTTGTGGTAAGCGATT 897
Query 969 TGGGAGACTGTGTATTGTT-ACTTGGA-A--A------TCTCTCTTGCTCGGCTAAGGAA 1018
| |||||| ||||||| || | ||||| | | | || ||||||||||||||||
Sbjct 898 TAGGAGACCGTGTATTTTTTA-TTGGAGAGCAGGGAAATATCGCTTGCTCGGCTAAGGAG 956
Query 1019 TTTCCTCGG-GGTTTTGGTTTGACTGAGAACGC-AGTTTTGTT 1059
|||| || |||| |||| ||| || |||| | | |||||||
Sbjct 957 CTTCC-CGATGGTTGTGGTGTGAGTGGGAACTCCA-TTTTGTT 997
> Ahg320235 jgi|Araly1|320235|fgenesh1_pm.C_scaffold_4000292
Length=1146
Score = 182 bits (98), Expect = 9e-45
Identities = 174/208 (84%), Gaps = 16/208 (8%)
Strand=Plus/Plus
Query 173 ATGGCAGAACCCAAAAC---GAAGAAGACATCAACATCATCGATAACCCCAGACTGGTCT 229
||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||
Sbjct 1 ATGGCAGAACCCAAAACGAGGAAGAAGACATCAACAACATCGATAAAGCCAGACTTGTCT 60
Query 230 GAGCTCCCTGAGGAGCTACTG-----TATCTTGAAGTATCTAGGGGACAACTGTTTCGAT 284
||||||| || ||| ||||| ||||| || | ||||| | ||||||||||||
Sbjct 61 CAGCTCCCGGAAGAGTTACTGCACCTTATCTCGACGCATCTA---AAGAACTGTTTCGAT 117
Query 285 GTTGTTCATGCTCGCTCTGTTTGCAGCTTGTGGCGATCCACATTTCC-TTTG-T-CT-CC 340
||||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||
Sbjct 118 GTTGTTCATGCTCGCTCTGTTTGCAGCTTGTGGCGATCCACATTTCCATTTCCTTCTTCC 177
Query 341 CTTGTTACGCCCAAGTTACTCTCTTCCC 368
|| ||||||| ||| || |||||||||
Sbjct 178 CTA-TTACGCCAAAGCTATTCTCTTCCC 204
> Ahg932561 jgi|Araly1|932561|scaffold_400549.1
Length=922
Score = 152 bits (82), Expect = 7e-36
Identities = 134/157 (85%), Gaps = 11/157 (7%)
Strand=Plus/Plus
Query 274 ACTGTTTCGATGTTGTTCATGCTCGCTCTGTTTGCAGCTT-GTGGCGATCCACATTTCC- 331
|||||||||||||||||||||||||||||||||||| || ||||||||| || |||||
Sbjct 85 ACTGTTTCGATGTTGTTCATGCTCGCTCTGTTTGCAA-TTCGTGGCGATCTACGTTTCCC 143
Query 332 TTTG-T-CTC-CCTTGTTACGCCCAAGTTACTCTCTTCCCT-CGTTCAACGAATTCCCT- 386
||| | || ||| ||||||||||||||||||||||| | | ||| |||| ||| ||
Sbjct 144 TTTCCTTCTTGCCTA-TTACGCCCAAGTTACTCTCTTCC-TACTTTCGACGAGTTCACTC 201
Query 387 TCAGAAAGCAAAAACATGTGCACCCTCGAGAAGGTCC 423
|| ||||||||| || |||||||||||||||||||||
Sbjct 202 TC-GAAAGCAAAGACTTGTGCACCCTCGAGAAGGTCC 237
> Ahg932848 jgi|Araly1|932848|scaffold_400836.1
Length=853
Score = 113 bits (61), Expect = 3e-24
Identities = 111/133 (83%), Gaps = 12/133 (9%)
Strand=Plus/Plus
Query 247 ACTGTATCTTGAAGTATCTAGGGGACAACTGTTTCGATGTTGTTCATGCTCGCTCTGTTT 306
||| ||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 179 ACT-TATCTCCAAGCATCTAGAGGATTACTGTTTCGATGTTGTTCATGCTCGCTCTGTTT 237
Query 307 GCAGCT-TGTGGCGATCCACATTTCC-TTTG-T-CTCC-CTTGTTACGCCCAAGTTACTC 361
|||||| | ||||||||| | ||||| ||| | || | || || |||||||||||||||
Sbjct 238 GCAGCTCT-TGGCGATCCTCGTTTCCCTTTCCTTCTTCTCT-GT-ACGCCCAAGTTACTC 294
Query 362 TC---TTCCCTCG 371
|| ||||||||
Sbjct 295 TCAAGTTCCCTCG 307
> Ahg932840 jgi|Araly1|932840|scaffold_400828.1
Length=544
Score = 73.1 bits (39), Expect = 5e-12
Identities = 88/111 (79%), Gaps = 6/111 (5%)
Strand=Plus/Plus
Query 667 GCAGCTTGAGAACGTCCCATATACTAT-ATGCGTTGATATAGTCACTTTTAGAGGCAGAT 725
||||||| |||| || || || | || |||| |||| |||||||||||||||||||||
Sbjct 143 GCAGCTTAAGAAAATCTCAAATTC-ATCATGCCATGATTTAGTCACTTTTAGAGGCAGAT 201
Query 726 TTTATGCACTTTTTCTTT-CAGGACAAATCGTC-GTTATCGATCCTTATTC 774
|||||||| | |||||| | ||| | || || |||||||||| |||||
Sbjct 202 TTTATGCAGTCTTTCTTAACGGGA-ACAT-GTTTGTTATCGATCGGTATTC 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5