BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24260.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481281 jgi|Araly1|481281|fgenesh2_kg.4__341__AT2G24260.1 2076 0.0
> Ahg481281 jgi|Araly1|481281|fgenesh2_kg.4__341__AT2G24260.1
Length=1334
Score = 2076 bits (1124), Expect = 0.0
Identities = 1269/1337 (95%), Gaps = 17/1337 (1%)
Strand=Plus/Plus
Query 1 TCTTCCCaaaaaaaaGTGTAGAAGCAGAAGAAACCCATCATCATCATGATGAACtcttct 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TCTTCCCAAAAAAAAGTGTAGAAGCAGAAGAAGCCCATCATCATCATGATGAACTCTTCT 60
Query 61 cttctaactccttcttcttcatcttcttcCCATATCCAAACTCCATCAACAACTTTCGAC 120
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 CTTCTAACTCCATCTTCTTCATCTTCTTCCCATATCCAAACTCCATCTACGACTTTCGAC 120
Query 121 CACGAAGACTTCCTCGATCAAATCTTTTCCTCGGCCCCGTGGCCCTCCGTCGTCGATGAT 180
||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 121 CACGAAGACTTCCTCGATCAAATCTTTTCTTCCTCCCCGTGGCCCTCCGTCGTCGACGAT 180
Query 181 GCTCATCCTCTTCCCTCCGATGGCTTCCACGGCCACGATGTCGACTCAAGGAATCAGCCG 240
|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 181 GCTCATCCTCCTCCCTCCGATGGCTTCCACGGCCACGACGTCGACTCAAGAAATCAACAG 240
Query 241 ATCATGATGATGCCTTTGAATGATGGCTCCTCCGTCCACGCTCTTTATAATGGCTTCTCC 300
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 241 ATCATGATGATGCCTTTGAATGATGGCTCCTCCGTGCACGCTCTTTATAATAGCTTCTCC 300
Query 301 GTCGCCGGATCTCTTCCTAACTTTCAAATCCCTCAGGGATCGGGAGGAGGATTGATGAAC 360
| | ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 301 GCCTCCGGATCTCTTCCTAACTTCCATATCCCTCAGGGATCGGGAGGTGGATTGATGAAC 360
Query 361 CAACAAGGACAAACGCAAACGCAAACGCAACCTCAGGCGAGCGCGTCTACAGCTACTGGT 420
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 361 CAACAAGGACAAACGCAAGCGCAAACGCAAACGCAGGCGAGCGCGTCTACAGCTACTGGT 420
Query 421 GGTACGGTGGCGGCTCCGCCGCAGAGTAGGACTAAAATCCGAGCTAGGAGAGGTCAAGCA 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 GGTACGGTGGCGGCTCCGCCGCAGAGTAGGACTAAAGTCCGAGCTAGGAGAGGTCAAGCA 480
Query 481 ACTGATCCTCATAGTATCGCCGAAAGGTTACGAAGAGAGAGAATTGCGGAAAGAATGAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTGATCCTCATAGTATCGCCGAAAGGTTACGAAGAGAGAGAATTGCGGAAAGAATGAAA 540
Query 541 GCTCTTCAAGAACTCGTTCCTAACGGCAATAAGACAGACAAGGCATCGATGCTCGATGAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTCTTCAAGAACTCGTTCCTAACGGCAATAAGACAGACAAGGCATCGATGCTCGATGAG 600
Query 601 ATCATAGATTATGTCAAGTTTTTACAACTCCAAGTCAAGGTACTGAGCATGAGCAGATTG 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTATAGATTATGTCAAGTTTTTACAACTCCAAGTCAAGGTACTGAGCATGAGCAGATTG 660
Query 661 GGAGGTGCTGCTTCCGTTTCTTCTCAAATCTCCGAGGCTGGTGGATCCCACGGGAACGCA 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGAGGTGCTGCTTCAGTTTCTTCTCAAATCTCCGAGGCTGGTGGATCCCACGGGAACGCA 720
Query 721 TCCTCCGCCATGGTCGGCGGTAGCCAGACGGCCGGAAACTCCAACGACAGCGTTACAATG 780
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 TCCTCCGCCATGGCCGGCGGTAGCCAGACGGCCGGAAACTCCAACGACAGCATTACAATG 780
Query 781 ACGGAACATCAAGTGGCCAAACTAATGGAAGAAGACATGGGCTCGGCCATGCAATATCTT 840
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 781 ACGGAACATCAAGTGGCGAAGCTAATGGAAGAAGACATGGGCTCGGCCATGCAATACCTT 840
Query 841 CAAGGGAAAGGTCTTTGTCTCATGCCAATCTCTTTAGCCACCGCCATCTCAACCGCCACG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAAGGGAAAGGTCTTTGTCTCATGCCAATCTCTTTAGCCACCGCCATCTCAACCGCCACG 900
Query 901 TGTCACTCCCGTAACCCTTTGATCCCTGGAGCTGTTGCCGACGTCGGAGGTCCTTCCCCT 960
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct 901 TGTCACTCTCGTAACCCTTTGATCCCTGGAGCTGTCGCGGACGTCGGAGGTCCTTCCTCT 960
Query 961 CCCAATCTTTCTGGCATGACCATACAGTCGACGAGTACAA--A-AATGGGTAGCGGTAAT 1017
||||||||||| |||||||||||||||||||||| ||||| | |||||||| |||||||
Sbjct 961 CCCAATCTTTCCGGCATGACCATACAGTCGACGAATACAACGACAATGGGTAACGGTAAT 1020
Query 1018 GGGAAATTAAA------CGGTAACGGCGTGACCGAGAGGT-C-GTCTTCTATCGCCGTTA 1069
||||| ||||| |||||||||||||||| | |||| | | | || ||||||||||
Sbjct 1021 GGGAAGTTAAATGGTAACGGTAACGGCGTGACCAA-AGGTTCTG-CGTCGATCGCCGTTA 1078
Query 1070 AAGAGGCCGTATCCGTTTCGAAAGCGTGATAACGGCCGTTTACTTTTGGGGTTAGGCAGA 1129
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1079 AAGAGGCTGTATCCGTTTCGAAACCGTGATAACGGCCGTTTACTTTTGGGGTTAGGCAAA 1138
Query 1130 GAGATACCAAAAACAAAGAGAAAGTGGGGTGAAGTGGGAGATAAAGTCAAAGTCTACGAA 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GAGATACCAAAAACAAAGAGAAAGTGGGGTGAAGTGGGAGATAAAGTCAAAGTCTACGAA 1198
Query 1190 GAATGAGGTTGAGGTTGTTTGATGTGTTCTCTGAACGAAGCCATATTTTTCGTAGAGTTT 1249
|||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1199 GAATGAGGTTGATGTTGTTTGATGTGTTCTCTGAAAGAAGCCGTATTTTTCGTAGAGTTT 1258
Query 1250 TGGTTCTTTTACCTACGCACTACAAAACCATTCAA-GGGACAtttctttttctttttt-- 1306
|||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||
Sbjct 1259 TGGTTCTTTTACCTACT-ACTACATAACCACTCAAAGGGACATTTCTTTTTCTTTTTTTT 1317
Query 1307 AAATATATGGTTGCAAT 1323
|||||||||||||||||
Sbjct 1318 AAATATATGGTTGCAAT 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5