BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24280.1
Length=3024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343993 jgi|Araly1|343993|fgenesh1_pg.C_scaffold_4000335 2459 0.0
Ahg353719 jgi|Araly1|353719|fgenesh1_pg.C_scaffold_7000892 1236 0.0
> Ahg343993 jgi|Araly1|343993|fgenesh1_pg.C_scaffold_4000335
Length=1488
Score = 2459 bits (1331), Expect = 0.0
Identities = 1431/1480 (97%), Gaps = 4/1480 (0%)
Strand=Plus/Plus
Query 1339 ATGTCTGCCTGTTTGTGTCTTGTTTTCCTGTTCTTCTCTATTGTTGCAGAAGCAACGTAT 1398
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTGCTTGTTTGTGTCTTGTGTTCCTGTTCTTCTCTATTGTTGCAGAAGCAACGTAT 60
Query 1399 TCTCCAGGAGGTTTCCACCATCTTTCTTCTCTAAGACTAA-AGAAGAAGG-TGTCCAAGT 1456
||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||
Sbjct 61 TCTCCAGGAGGTTTCCACCATCTTTCTTCTCTAAGAC-AACAGAAAAAGGCT-TCCAAGT 118
Query 1457 CAAAACATGAGTTACCTTTTGAAACTCGTTACTTCCCTCAAAATCTTGACCACTTCAGTT 1516
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 119 CAAAGCAAGAGTTACCTTTTGAGACTCGTTACTTCCCTCAAAATCTTGACCACTTCAGTT 178
Query 1517 TCACACCAGACAGCTACAAAGTCTTCCACCAGAAGTACCTCATCAACAACCGTTTCTGGC 1576
|||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 179 TCACACCAGAGAGCTACACAGTCTTCCACCAGAAGTACCTCATCAACAGCCGTTTCTGGC 238
Query 1577 GAAAAGGTGGTCCCATCTTTGTTTACACTGGAAATGAAGGAGACATCGACTGGTTTGCTT 1636
| |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 239 GCAAAGGTGGCCCCATCTTTGTCTACACCGGAAATGAAGGAGACATTGACTGGTTTGCTT 298
Query 1637 CCAACACCGGTTTCATGCTGGATATTGCTCCCAAGTTCCGGGCTCTTCTTGTTTTCATTG 1696
||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 299 CCAACACCGGTTTCATGTTGGATACTGCTCCCAAGTTCCAGGCTCTTCTTGTTTTCATTG 358
Query 1697 AACACCGGTTCTATGGAGAATCAACGCCATTTGGGAAGAAGTCGCATAAGTCAGCTGAGA 1756
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 359 AACACCGGTTCTATGGAGAATCAACGCCATTTGGAAAGAAGTCGCATAAGTCGGCTGAGA 418
Query 1757 CATTGGGTTACCTAAACTCTCAGCAAGCGTTGGCTGATTATGCAATCCTGATAAGAAGCT 1816
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 CATTGGGTTACCTAAGCTCTCAGCAAGCGTTGGCTGATTATGCGATCCTGATAAGAAGCT 478
Query 1817 TGAAGCAGAATCTATCGTCTGAGGCATCGCCTGTGGTTGTCTTTGGTGGCTCTTATGGTG 1876
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 TGAAGCAGAATCTATCGTCTGAGGCATCACCTGTGGTTGTCTTTGGTGGCTCTTATGGTG 538
Query 1877 GAATGCTTGCAGCGTGGTTCAGACTCAAGTATCCCCACATAACAATCGGTGCATTGGCAT 1936
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 GAATGCTTGCAGCGTGGTTCAGGCTCAAGTATCCCCACATAACAATCGGTGCATTGGCAT 598
Query 1937 CCTCCGCTCCAATACTTCATTTCGATAACATTGTACCATTGACAAGCTTCTATGATGCCA 1996
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 599 CCTCCGCTCCAATACTTCATTTCGATAACATTGTGCCATTGACGAGCTTCTATGATGCCA 658
Query 1997 TTTCTCAGGATTTTAAGGATGCAAGTATTAATTGTTTCAAAGTCATCAAGAGAAGCTGGG 2056
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 659 TTTCTCAGGATTTTAAGGATGCAAGTATTAATTGTTTCACAGTCATCAAGAAAAGCTGGG 718
Query 2057 AAGAGCTAGAGGCAGTTTCAACTATGAAAAATGGCTTGCAAGAACTCAGCAAAAAGTTCC 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAGAGCTAGAGGCAGTTTCAACTATGAAAAATGGCTTGCAAGAACTCAGCAAAAAGTTCC 778
Query 2117 GAACTTGCAAGGGCCTTCATTCTCAATATTCAGCCAGAGATTGGTTAAGTGGAGCATTTG 2176
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 GAACTTGCAAAGGCCTTCATTCTAAATATTCAGCCAGAGATTGGTTAAGTGGAGCATTTG 838
Query 2177 TTTATACAGCCATGGTTAATTATCCAACTGCAGCTAATTTCATGGCGCCACTGCCTGGTT 2236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTATACAGCCATGGTTAATTATCCAACTGCAGCTAATTTCATGGCGCCACTGCCTGGTT 898
Query 2237 ATCCCGTAGAGCAGATGTGCAAGATCATCGACGGGTTCCCTCGAGGATCCAGTAATCTTG 2296
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATCCCGTGGAGCAGATGTGCAAGATCATCGACGGGTTCCCTCGAGGATCCAGTAATCTTG 958
Query 2297 ACCGTGCCTTTGCTGCTGCAAGCTTATACTACAACTATTCGGGATCAGAAAAATGCTTCG 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACCGTGCCTTTGCTGCTGCAAGCTTATACTACAACTATTCGGGATCAGAAAAATGCTTCG 1018
Query 2357 AGATGGAACAACAAACTGATGATCATGGACTTGATGGTTGGCAATATCAGGCGTGTACAG 2416
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 AGATGGAACAACAAACTGATGATCATGGACTTGATGGTTGGCAATATCAGGCGTGCACAG 1078
Query 2417 AGATGGTGATGCCAATGAGCTGCTCGAACCAGAGCATGCTCCCTCCGTACGAAAATGACT 2476
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1079 AGATGGTGATGCCAATGAGCTGCTCAAACCAGAGCATGCTGCCTCCGTACGACAATGACT 1138
Query 2477 CTGAGGCATTCCAAGAACAATGCATGACTAGATACGGAGTCAAGCCTCGACCCCATTGGA 2536
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1139 ATGAGGCATTCCAAGAACAATGCATGAGTAGATACGGAGTCAAGCCTCGACCCCATTGGA 1198
Query 2537 TCACCACAGAATTTGGTGGAATGAGGATAGAGACAGTACTGAAGAGATTTGGAAGCAACA 2596
|||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||
Sbjct 1199 TCACCACAGAATTTGGCGGAAAGAGAATAGAGACAGTATTGAAGAGATTTGGAAGCAACA 1258
Query 2597 TCATATTCTCCAATGGAATGCAGGACCCTTGGAGCCGTGGAGGGGTTCTGAAGAACATTT 2656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCATATTCTCCAATGGAATGCAGGACCCTTGGAGCCGTGGAGGGGTTCTGAAGAACATTT 1318
Query 2657 CAAGTAGCATCGTTGCGCTTGTGACCAAGAAAGGAGCTCACCATGCAGATCTCAGGGCTG 2716
|||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1319 CAAGCAGCATCGTCGCGCTTGTGACCAAGAAAGGAGCTCACCATGCGGATCTGAGGGCTG 1378
Query 2717 CTACAAAAGATGACCCAGAGTGGCTGAAAGAGCAGAGGAGGCAAGAGGTTGCCATTATAG 2776
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1379 CTACAAAAGATGACCCAGAGTGGCTGAAAGAGCAGAGGAGGCAAGAGGTTTCCATTATAG 1438
Query 2777 AGAAATGGATCAGTGAGTATTACAGAGATTTAAGAGAAGA 2816
||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AGAAATGGATCAGTGAGTATTACAGAGATTTAAGAGAAGA 1478
> Ahg353719 jgi|Araly1|353719|fgenesh1_pg.C_scaffold_7000892
Length=1494
Score = 1236 bits (669), Expect = 0.0
Identities = 1231/1496 (82%), Gaps = 63/1496 (4%)
Strand=Plus/Plus
Query 1333 GAGAAAATGTCTGCCTGTTTGTGTCTTGTTTTCCTGTTCTTCTCTATTGTTGCAGAAGCA 1392
|||| |||||| || ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct 4 GAGAGAATGTCAGCTTGTTTATGTCTTGTATTCCTCTTCTTAACTGTTGTTGCAGAAGCA 63
Query 1393 ACGTATTCTCCAGGAGGTTTCC-ACCATCTTTCT-TCTCTAAGACTAAAGA-AG-AAGGT 1448
| |||| |||| ||||| |||| ||||||||| | ||| | ||| ||| | || |||
Sbjct 64 AAGTATCCTCCTGGAGG-TTCCTACCATCTTT-TATCTTTGAGA--AAAAACAGTAAGAC 119
Query 1449 GTCCAAGTCAAA-ACATGAGTTA-CC--T---TTTGAAACTCGTTACTTCCCTCAAAATC 1501
||||||||||| || |||||| || | ||| | || |||||||||||||| ||||
Sbjct 120 CTCCAAGTCAAAGGCA-GAGTTACCCTTTCACTTTCAGACACGTTACTTCCCTCAGAATC 178
Query 1502 TTGACCACTTCAGTTT-CACACCAGACAGCTACA-AAGTCTTCCACCAGAAGTACCTCAT 1559
|||||||||| ||||| || |||||| ||||||| || ||||||| ||||||||||||||
Sbjct 179 TTGACCACTTTAGTTTCCA-ACCAGAGAGCTACAGAA-TCTTCCATCAGAAGTACCTCAT 236
Query 1560 CAACAACCGTTTCTGGCGAAAAGGTGGTCCCATCTTTGTTTACACTGGAAATGAAGGAGA 1619
|| || || ||||||||| |||||||| ||||||||||| ||||| || |||||||| ||
Sbjct 237 CAGCAGCCATTTCTGGCGCAAAGGTGGCCCCATCTTTGTCTACACAGGCAATGAAGGTGA 296
Query 1620 CATCGACTGGTTTGCTTCCAACACCGGTTTCATGCTGGATATTGCTCCCAAGTTCCGGGC 1679
||| || |||||||||||||||||||| |||||| |||| |||||||||||||||| |||
Sbjct 297 CATTGAATGGTTTGCTTCCAACACCGGCTTCATGTTGGACATTGCTCCCAAGTTCCAGGC 356
Query 1680 TCTTCTTGT-TTTCATTGAACACCGGTTCTATGGAGAATCAACGCCATTTGGGAAGAAGT 1738
||||||||| ||| || ||||| | |||||||||| | | | ||||
Sbjct 357 TCTTCTTGTCTTT-ATCGAACATAGATTCTATGGAG-----A-G-----T----CGAAGC 400
Query 1739 CGCATAAGTCAGCTGAGACATTGGGTTACCTAAACTCTCAGCAAGCGTTGGCTGATTATG 1798
|||| || | || |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 401 CGCACAACTTGGCCAAGACATTGGGATACCTAAACTCACAGCAAGCGTTGGCTGATTATG 460
Query 1799 CAATCCTGATAAGAAGCTTGAAGCAGAATCTATCGTCTGAGGCATCGCCTGTGGTTGTCT 1858
||||| ||||||||||||||||||||||||||||||| || || || ||||| || ||||
Sbjct 461 CAATCTTGATAAGAAGCTTGAAGCAGAATCTATCGTCCGAAGCCTCTCCTGTCGTAGTCT 520
Query 1859 TTGGTGGCTCTTATGGTGGAATGCTTGCAGCGTGGTTCAGACTCAAGTATCCCCACATAA 1918
|||||||||||||||||||||||||||||||||||||||| || |||||||| || || |
Sbjct 521 TTGGTGGCTCTTATGGTGGAATGCTTGCAGCGTGGTTCAGGCTAAAGTATCCGCATATCA 580
Query 1919 CAATCGGTGCATTGGCATCCTCCGCTCCAATACTTCA-TTTCGATAACATTGTACCAT-T 1976
|||| |||||||| || ||||| |||||||| || || ||| ||||| ||||| || | |
Sbjct 581 CAATTGGTGCATTAGCTTCCTCTGCTCCAATTCTGCAGTTT-GATAAGATTGTTCCGTCT 639
Query 1977 GACAAGCTTCTATGATGCCATTTCTCAGGATTTTAAGGATGCAAGTATTAATTGTTTCAA 2036
||||||| ||| | | | ||||||||||||| ||||| || ||| |||| ||||| |
Sbjct 640 T-CAAGCTTTTATAACGTCGTTTCTCAGGATTTCAAGGACGCGAGTCTTAACTGTTTTGA 698
Query 2037 AGTCATCAAGAGAAGCTGG-GAAGAGCTAGAGGCAGTTTCAACTATGAAAAATGGCTTGC 2095
||||||||||| ||||||| || || || |||| |||| || |||||| ||||||| |
Sbjct 699 AGTCATCAAGAAAAGCTGGAGA-GAACTGGAGGTTTTTTCTACCATGAAAGATGGCTTAC 757
Query 2096 AAGAACTCAGCAAAAAGTTCCGAACTTGCAAGGGCCTTCATTCTCAATAT-TCAGCCAGA 2154
|||||||||||||||||||| |||||||||||| ||||| || ||| | |||| |
Sbjct 758 AAGAACTCAGCAAAAAGTTCAGAACTTGCAAGGATCTTCACGCTGTCTATCT-AGCCTCA 816
Query 2155 -GATTGGTTA-AGTGGAGCATTTGTTTATACAGCCATGGTTAATTATCCAACTGCAGCTA 2212
| | || || || ||| ||| | ||||||| ||||||||||| |||||| |||| |
Sbjct 817 AGGT-GGCTAGAGAC-AGCCTTTACTGATACAGCAATGGTTAATTACCCAACTCCAGCAA 874
Query 2213 ATTTCATGGCGCCACTGCCTGGTTATCCCGTAGAGCAGATGTGCAAGATCATCGACGGGT 2272
|||||||||| |||||||||| |||||| || ||| |||||||||||||||||||| |||
Sbjct 875 ATTTCATGGCTCCACTGCCTGCTTATCCAGTGGAGGAGATGTGCAAGATCATCGACTGGT 934
Query 2273 TCCCTCGAGGATCCAGTAATCTTGACCGTGCCTTTGCTGCTGCAAGCTTATACTACAACT 2332
| ||| || | |||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 935 TTCCTTTAGAAGCCAGCAATCTTGATCGTGCGTTTGCAGCTGCAAGCTTATACTACAACT 994
Query 2333 ATTCGGGATCAGAAAAATGCTTCGAGATGGAACAAC-AAACTGATGATCATGGACTTGAT 2391
|||| || ||||| || |||||||| || ||| ||| |||||||| ||||||||| ||
Sbjct 995 ATTCAGGTTCAGAGAATTGCTTCGATATTGAA-AACCAAACTGATCCTCATGGACTCAAT 1053
Query 2392 GGTTGGCAATATCAGGCGTGTACAGAGATGGTGATGCCAATGAGCTGCTCGAACCAGAGC 2451
|||||| | | ||||| || |||||||||||||||||||| ||||| || |||||||||
Sbjct 1054 GGTTGGTATTGGCAGGCATGCACAGAGATGGTGATGCCAATAAGCTGTTCAAACCAGAGC 1113
Query 2452 ATGCTCCCTCCGTACGAAAATGACTCTGAG-GCATTCCAAGAACAATG-CATGACTAG-A 2508
||| | | || | |||| |||| | | | | ||||||| | || | | | || |
Sbjct 1114 ATGTTTCAACCATTCGAATATGA-TGAAAAAGTAGACCAAGAAGACTGTC-TAA--AGGA 1169
Query 2509 -TACGGAGTCAAGCCTCGACCCCATTGGATCACCACAGAATTTGGTGGA-ATGAGGATAG 2566
||||| ||||||||| |||| || ||||||||||| |||||||| ||| || || ||||
Sbjct 1170 ATACGGTGTCAAGCCTAGACCACACTGGATCACCACCGAATTTGGCGGACAT-AGAATAG 1228
Query 2567 AGACAGTACTGAAGAGATTTGGAAGCAACATCATATTCTCCAATGGAATGCAGGACCCTT 2626
||| || ||||||||||||| |||||||| ||||||||||||||||||||||| || |
Sbjct 1229 AGATGGTGTTGAAGAGATTTGGCAGCAACATTATATTCTCCAATGGAATGCAGGATCCAT 1288
Query 2627 GGAGCCGTGGAGGGGTTCTGAAGAACATTTCAAGTAGCATCGTTGCGCTTGTGACCAAGA 2686
||||| | | |||||||||||||||||| || || |||||| ||||| ||||||||||||
Sbjct 1289 GGAGCAGAGAAGGGGTTCTGAAGAACATATCGAGCAGCATCATTGCGTTTGTGACCAAGA 1348
Query 2687 AAGGAGCTCACCATGCAGATCTCAGGGCTGCTACAAAAGATGACCCAGAGTGGCTGAAAG 2746
|||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1349 AAGGAGCTCACCATACGGATCTCAGGGCTGCTACAAAAGAAGACCCAGAGTGGCTGAAAG 1408
Query 2747 AGCAGAGGAGGCAAGAGGTTGCC-ATTATAGAGAAATGGATCAGTGAGTATTACAG 2801
| |||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 1409 AACAGAGGAGGCAAGAAGTTGCAGAG-ATAGAGAAATGGATCAGTGAGTATTACAG 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114194554510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5