BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G24285.1

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481302 jgi|Araly1|481302|fgenesh2_kg.4__362__AT2G24285.1          363    8e-100


> Ahg481302 jgi|Araly1|481302|fgenesh2_kg.4__362__AT2G24285.1
Length=363

 Score =  363 bits (196),  Expect = 8e-100
 Identities = 286/327 (87%), Gaps = 15/327 (5%)
 Strand=Plus/Plus

Query  1    GATACTG-AATTAATGAAACTCGATGTTCATGTAACCGCTTGGTCTCGTACTCCATCATC  59
            ||||||| || | || |||||||||||||||||||||||||||| |||||||||||  | 
Sbjct  45   GATACTGAAACT-ATCAAACTCGATGTTCATGTAACCGCTTGGTTTCGTACTCCAT--T-  100

Query  60   GTCAGGTTTCTTAAACTCG-GTAATGATCAGTCGAGACAGAGACTTCGAGGAATTTATCA  118
            |||||| ||||||| |  | ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct  101  GTCAGGGTTCTTAAGCA-GTGTAATAATCAGCCGAGACAGAGAGTTCGAGGAATTTATCA  159

Query  119  TAAACGA-CAGGGATGGTAGCGTCACGAGTCTCGGATCTTACCAGAATCCTTCTCGAGGT  177
            || |||  || | ||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct  160  TAGACGGGCACG-ATGATAGCGTCACGAGTCTCGGATCTTACCGGGATCCTTCTCGAGGT  218

Query  178  CCCGACCCACTAATCTTTCTAGACTTC-AGAAACTTCGAACCAAACTACGTCTATCAACT  236
            ||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||
Sbjct  219  CCCGACCCACTAATCTTTCTAAACTTCCA-AAACTTCTAACCAAACTACGTCTATCAACT  277

Query  237  TCTCCTAAGCCAATTCCACGATCATGTCTTGTCCGAACATATAGCTGATCAGATT---GT  293
            ||||| ||||||| | ||||||||||||||||||||||| ||||||| |||||||   ||
Sbjct  278  TCTCCAAAGCCAACTACACGATCATGTCTTGTCCGAACAAATAGCTGGTCAGATTTTAGT  337

Query  294  CCAAGCCAAACGGGATAAGAAGTCAAA  320
            | ||||| ||||   ||||||||||||
Sbjct  338  CGAAGCCCAACGAC-TAAGAAGTCAAA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16406903270


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5