BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G24290.1

Length=884
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899775 jgi|Araly1|899775|Al_scaffold_0004_425                     634    0.0  


> Ahg899775 jgi|Araly1|899775|Al_scaffold_0004_425
Length=411

 Score =  634 bits (343),  Expect = 0.0
 Identities = 383/402 (95%), Gaps = 3/402 (1%)
 Strand=Plus/Plus

Query  224  AGCACCAACTCCATTTGTCCTCCTT--GTG-TCTGCGATTTTCCTCCTCCTTTGTCTCTC  280
            |||| ||||| ||||||||||||||  | | ||||||||| |||||||||||||||||||
Sbjct  10   AGCAGCAACTTCATTTGTCCTCCTTGCGAGATCTGCGATTGTCCTCCTCCTTTGTCTCTC  69

Query  281  CTCCAGATTGCTCCCGGGCTTGCAAACCTCTCTATTACAGGTTGTGGCAGCGATGATCCA  340
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  70   CTCCAGATTGCTCCCGGGCTTGCAAACCTCTCTATTACAGGTTGTGGAAGCAATGATCCA  129

Query  341  GAGCTCAAAGAGGAGATGGAGAAGCCGTTTGTGGATCTTCTCACAGAAGAGCTGAAGCTT  400
            ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  130  GAGCTCAAAGAGGAGATGGAGAAGCAGTTTGTTGATCTTCTCACAGAAGAGCTGAAGCTT  189

Query  401  CAAGAAGCAGTGGCAGACGAGCATAGTCGTCATATGAATGTTACACTTGCCGAAGCTAAA  460
            ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct  190  CAAGAAGCAGTTGCAGACGAGCATAGTCATCACATGAATGTTACACTTGCCGAAGCTAAA  249

Query  461  AGAGTTGCTTCACAGTACCAAAAGGAGGCTGAGAAGTGTAACGCTGCCACTGAAATTTGC  520
            || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  250  AGGGTTGCTTCACAGTACCAAAAGGAGGCTGAGAAGTGTAACGCTGCCACGGAAATTTGT  309

Query  521  GAATCAGCTAGAGAGAGAGCTCAAGCATTGTTGCTCAAAGAGCGGAAGATCACTTTTTTG  580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  310  GAATCAGCTAGAGAGAGAGCTCAAGCATTGTTGCTCAAAGAGCGGAAGATCACTTTTTTG  369

Query  581  TGGGAGCGCAGAGCTCGGCAATTAGGTTGGGAAGGTGAGTAA  622
            ||||| |||| |||||||||||||||||||||||||||||||
Sbjct  370  TGGGAACGCATAGCTCGGCAATTAGGTTGGGAAGGTGAGTAA  411



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32747585703


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5