BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24290.1 Length=884 Score E Sequences producing significant alignments: (Bits) Value Ahg899775 jgi|Araly1|899775|Al_scaffold_0004_425 634 0.0 > Ahg899775 jgi|Araly1|899775|Al_scaffold_0004_425 Length=411 Score = 634 bits (343), Expect = 0.0 Identities = 383/402 (95%), Gaps = 3/402 (1%) Strand=Plus/Plus Query 224 AGCACCAACTCCATTTGTCCTCCTT--GTG-TCTGCGATTTTCCTCCTCCTTTGTCTCTC 280 |||| ||||| |||||||||||||| | | ||||||||| ||||||||||||||||||| Sbjct 10 AGCAGCAACTTCATTTGTCCTCCTTGCGAGATCTGCGATTGTCCTCCTCCTTTGTCTCTC 69 Query 281 CTCCAGATTGCTCCCGGGCTTGCAAACCTCTCTATTACAGGTTGTGGCAGCGATGATCCA 340 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 70 CTCCAGATTGCTCCCGGGCTTGCAAACCTCTCTATTACAGGTTGTGGAAGCAATGATCCA 129 Query 341 GAGCTCAAAGAGGAGATGGAGAAGCCGTTTGTGGATCTTCTCACAGAAGAGCTGAAGCTT 400 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 130 GAGCTCAAAGAGGAGATGGAGAAGCAGTTTGTTGATCTTCTCACAGAAGAGCTGAAGCTT 189 Query 401 CAAGAAGCAGTGGCAGACGAGCATAGTCGTCATATGAATGTTACACTTGCCGAAGCTAAA 460 ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 190 CAAGAAGCAGTTGCAGACGAGCATAGTCATCACATGAATGTTACACTTGCCGAAGCTAAA 249 Query 461 AGAGTTGCTTCACAGTACCAAAAGGAGGCTGAGAAGTGTAACGCTGCCACTGAAATTTGC 520 || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 250 AGGGTTGCTTCACAGTACCAAAAGGAGGCTGAGAAGTGTAACGCTGCCACGGAAATTTGT 309 Query 521 GAATCAGCTAGAGAGAGAGCTCAAGCATTGTTGCTCAAAGAGCGGAAGATCACTTTTTTG 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 GAATCAGCTAGAGAGAGAGCTCAAGCATTGTTGCTCAAAGAGCGGAAGATCACTTTTTTG 369 Query 581 TGGGAGCGCAGAGCTCGGCAATTAGGTTGGGAAGGTGAGTAA 622 ||||| |||| ||||||||||||||||||||||||||||||| Sbjct 370 TGGGAACGCATAGCTCGGCAATTAGGTTGGGAAGGTGAGTAA 411 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32747585703 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5