BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24300.2
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481287 jgi|Araly1|481287|fgenesh2_kg.4__347__AT2G24300.2 3066 0.0
Ahg353717 jgi|Araly1|353717|fgenesh1_pg.C_scaffold_7000890 1140 0.0
> Ahg481287 jgi|Araly1|481287|fgenesh2_kg.4__347__AT2G24300.2
Length=1954
Score = 3066 bits (1660), Expect = 0.0
Identities = 1860/1957 (95%), Gaps = 11/1957 (1%)
Strand=Plus/Plus
Query 1 GTTCCATGAACAAGCGAGGATACGAATGCAGTCAAGAGGATACTGACAAGCTGCCAGAAT 60
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1 GTTCCATGAACAAGCGAGGATACGAATGCAGTCAAGAGGATACAGACAAGTTGCCAGAAT 60
Query 61 CAAAGAGACAAAAAGTGCCTGCTTTAGCAAGTGTTATTGTGGAAGCTGTCAAAGTAGATA 120
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 61 CAAAGAGACAAAAAGTGCCTGCTTTGGCAAGTGTTATTGTGGAAGCTGTTAAGGTAGATA 120
Query 121 GTCTGCAGAGGCTTTGCTCGTCTTTGGAGCCGTTGTTTCGCAGAATTGTTAGCGAAGAAG 180
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 121 GTCTGCAGAGGCTTTGCTCGTCTTTGGAGCCGTTGTTTCACAGAATTGTTAGTGAAGAGG 180
Query 181 TGGAACGAGCCTTATCAAGGTTGGGAAACGCAAAGTTAACCTCGAGGTCACCAGAACCAA 240
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 181 TGGAACGAGCCTTATCAAGGTTGGGAAATGCAAAGTTAACATCGAGGTCACCAGAACCAA 240
Query 241 AGAGGATCCAAGACCGCAATGGAAGAAACCTGCAACTTCACTTTAGGACGCGAATGCCTC 300
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 AGAGGATCCAAGACCGCGATGGAAGAAACCTACAACTTCACTTTAGGACGCGAATGCCTC 300
Query 301 CTCACTTATTCACAGGCGGGAAAGTTGAGGGAGAGCGAGGCTCGGCAATTCATGTGGTTC 360
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 CTCACTTATTCACAGGTGGGAAAGTCGAGGGAGAGCGAGGCTCGGCAATTCATGTGGTTC 360
Query 361 TTATAGATGCAAACACAGGAAATGTAGTTCAAACAGGAGAAGAATCAGCTTCAAAGCTGA 420
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 361 TTATAGATGCAAACACAGGAAATGTAGTCCAAACAGGAGAAGAGTCAGCTTCAAAGCTGA 420
Query 421 ATGTTGTAGTGTTAGAGGGTGACTTCAATGATGAAGACGATGAAGACTGGACCAGAGAGC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 ATGTTGTAGTGTTAGAGGGTGACTTCAATGATGAAGACGATGAAGACTGGACGAGAGAGC 480
Query 481 ACTTTGAGAGCTTTGAAGTGAAAGAGCGAGAAGGGAAACGCCCCATCTTAACTGGGGACA 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 ACTTTGAGAGCTTTGAAGTGAAAGAGCGAGAAGGGAAACGCCCCATTTTAACTGGGGACA 540
Query 541 CACAGATAGTGCTTAAGGAAGGTGTGGGAACTCTT-GGAGAACTTACTTTCACTGACAAC 599
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 541 CACAGATAGTGCTTAAGGAAGGTGTGGGAACT-TTAGGAGAACTTACTTTCACTGACAAC 599
Query 600 TCGAGTTGGATACGTAGCCGAAAGTTTAGGCTTGGTGTTAAGCCGGCTTCAGGGTATGGT 659
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 600 TCGAGTTGGATACGGAGCCGAAAGTTTAGGCTTGGTGTTAAGCCGGCTGCAGGGTGTGGT 659
Query 660 GATAGCTTTTGCATTCGTGAAGCCAAAACAGAACCTTTTGCTGTCAAAGATCATAGAGGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATAGCTTTTGCATTCGTGAAGCCAAAACAGAACCTTTTGCTGTCAAAGATCATAGAGGA 719
Query 720 GAACTATACAAGAAACATTATCCACCGGCTGTACACGATGAAGTCTGGAGACTGGATCGA 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GAATTATACAAGAAACATTATCCACCGGCTGTACACGATGAAGTCTGGAGACTGGATAGA 779
Query 780 ATAGCGAAAGACGGAGTGCTACACAAGAAGCTATTGAAAGCTAATATTGTGACAGTCGAA 839
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 780 ATAGCGAAAGACGGAGTGCTACACAAGAAACTATTGAAAGCTAATATCGTGACAGTCGAA 839
Query 840 GACTTCCTTCGACTCCTTGTTAAGGATCCACAGAAGCTGAGAAATTTGCTTGGGAGTGGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GACTTCCTTCGACTCCTTGTTAAGGATCCACAGAAGCTGAGAAATTTGCTTGGGAGTGGA 899
Query 900 ATGTCGAATAGAATGTGGGAGAACACGGTGGAGCACGCAAAGACGTGCGTGTTGGGTGGG 959
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 900 ATGTCGAATAGAATGTGGGAGAACACGGTGGAGCACGCAAAGACATGTGTGTTGGGTGGG 959
Query 960 AAGCTTTATGTGTTTTACACAGACCAAACTCACGCTACAGGCGTTGTCTTCAATCATATA 1019
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 960 AAGCTTCATGTGTTTTACACAGACCAGACTCACGCTACAGGCGTTGTCTTCAACCATATC 1019
Query 1020 TATGAATTCCGAGGCCTAATTACAAACGGACAGTTCCTATCTCTAGAGTCTCTTAACCAT 1079
||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||
Sbjct 1020 TATGAATTCCGAGGCCTAATTACAAACGGGCATTTCCTATCGCTAGAGTCTCTCAACCAT 1079
Query 1080 GACCAAAAGATTTCTGCAGACATTTTGGTGAAGCTGGCTTACGAGAACTGGCATAAAGCT 1139
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 GACCAAAAGATTTCTGCAGATATTTTGGTCAAGCTGGCTTACGAGAACTGGCATAAAGCT 1139
Query 1140 ATTGAGTATGACGGTAAGCTGTTGAATTGCTTACCAGTTGCCGAGAAGGAAATAAAAAGC 1199
|||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1140 ATTGAGTACGACGGTAAGCTGTTAAATTGCTTACCAGTTGCCGAGAAGGAAGTAAAAAGC 1199
Query 1200 TTACTGGAACCAAAAATGGTCTCAGCACAAACTGCTCCGAACCATCAACAGCTGCATAAC 1259
|||| ||||||||||||||| |||||||||| ||| |||||||||||||||||| ||
Sbjct 1200 TTACCAGAACCAAAAATGGTCACAGCACAAACAACTCAGAACCATCAACAGCTGCACAAT 1259
Query 1260 CAGAACAATAGGCAAACTGTGCAAGGTCATCAGAATGCGATTACCTATTCACCGGTCCCT 1319
||||| |||||||||||||||||| ||||||||||||| ||||||||| ||| |||||||
Sbjct 1260 CAGAATAATAGGCAAACTGTGCAATGTCATCAGAATGCTATTACCTATACACTGGTCCCT 1319
Query 1320 CAACCAATAGATTATCCTCAGTTTGCGCAGCAACATTGCAACCAATTATTACCCTCATTC 1379
||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 1320 CAACCAATAGATTATCCTCAGTTTGAGCAGCAAAATTGCAGCCAATTATTACCCTCATTT 1379
Query 1380 CCTTGCAACGTACAAGACTACAACAGGTCGATGGAAAGCTCCAATGATTCAAGCTCATAC 1439
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1380 CCTTGCAACGTACAAGACTACAACAGGTCGATGGAAAGTTCCAATGATTCAAGTTCATAC 1439
Query 1440 AATGGAGAAGATTGGTGTC-CACCAAGAGCTGCAGGACAAGGTCTTGAAGACATTTTCAG 1498
||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct 1440 AATGGAGAAGATTGGTGTCGC-CCAAGAGCTGCAGGACAAGGACTTGAAGACATTTTCAG 1498
Query 1499 CGAAGAAATCAGACTAAGGAGTTCTGAAATGCTTGAGACTGACGATATGCAGAGACTGTT 1558
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1499 CGAAGAAATCAGACTAAGGAGCTCTGAAATGCTTGAGACTGATGATATGCAGAGACTGTT 1558
Query 1559 GAAGACGTTTGGTATCGGTGTGAACACTGTGGGAACACAAGGAGGGTTTGGTCAGACTGA 1618
|||||| ||||| || |||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 1559 GAAGACTTTTGGCATTGGTGTGAACAATGTGGGAACAGAAGGTGGGTTTGGTCAGACTGA 1618
Query 1619 TGAGTCTTGTTACGGTTATAGCATCCCGTACCAAGCTCAGATCGATAACACGTACCGAAG 1678
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| | | |
Sbjct 1619 TGAGTCTTGTTACGGTTATAACATACCGTACCAAGCTCAGATCGATAACACGTTCAGGAC 1678
Query 1679 AGAACGTAATAGAGGCTCGGGGAAAGCTGTTGTTGGATGGCTAAAGCTTAAAGCTGCTTT 1738
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1679 AGAACGTAACAGAGGCTCGGGAAAAGCTGTGGTTGGATGGCTAAAGCTTAAAGCTGCTTT 1738
Query 1739 GAGATGGGGTATCTTTATACGCAAGAAAGCTGCAGAGAGAAGGCCTCAGATTGTGGAGAT 1798
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1739 GAGATGGGGTATCTTCATACGCAAGAAAGCTGCAGAGAGGAGGCCTCAGATTGTGGAGAT 1798
Query 1799 CGATTGACAAAAA--GGGATAGAGAGC-TTCTTGAGGTTTTAATCCGTTGAAGATTTTTC 1855
||||||||||||| |||||||||||| || ||||||||||||||| |||| || |||||
Sbjct 1799 CGATTGACAAAAAATGGGATAGAGAGCCTT-TTGAGGTTTTAATCCTTTGACGAATTTTC 1857
Query 1856 GTTTTCGTTAAAGCTTGAAGACAGTTTCTGTGTGTTCATCTTTTGGATGAATAATCTAAG 1915
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1858 GTTTTCGTTAAAGCTTGAAGACAGTTTCTTTGTGTTCATCTTTTGGATGAACAATCTAAG 1917
Query 1916 AGTAGAGAG---TGGACTTTGCTTTGTATTACATGTA 1949
|||||||| ||||||||||||| |||||||||||
Sbjct 1918 GGTAGAGAGAAGTGGACTTTGCTTTCTATTACATGTA 1954
> Ahg353717 jgi|Araly1|353717|fgenesh1_pg.C_scaffold_7000890
Length=1671
Score = 1140 bits (617), Expect = 0.0
Identities = 1018/1209 (84%), Gaps = 38/1209 (3%)
Strand=Plus/Plus
Query 2 TTCCATGAACAAGCGAGGATACGAATGCAGTCAAGAGGATACTGACAAGC-TGCCAGAAT 60
||||||||||||| ||||| | | | || |||||| || | ||||| | ||||||||
Sbjct 9 TTCCATGAACAAGAGAGGACATGGACACAATCAAGAACATGCAGACAA-CTTGCCAGAAC 67
Query 61 CAAAGAGACAAAAAG-TGCCTGCTTTAGCAAGTGTTATTGTGGAAGCTGTCAAAGTAGAT 119
||||||||| | ||| | |||||||| |||||||| || |||||||||||||| ||||||
Sbjct 68 CAAAGAGAC-AGAAGCTTCCTGCTTTGGCAAGTGTCATAGTGGAAGCTGTCAAGGTAGAT 126
Query 120 AGTCTGCAGAGGCTTTGCTCGTCTTTGGAGCCGTTGTTTCGCAGAATTGTTAGCGAAGAA 179
||||||||||||||||||||||||||||| || || ||||| |||||||| || |||||
Sbjct 127 AGTCTGCAGAGGCTTTGCTCGTCTTTGGAACCATTATTTCGAAGAATTGTCAGTGAAGAG 186
Query 180 GTGGAACGAGCCTTATCAAGGTTGGGA-AACGC-AAAGT-TAACCTCGAGGTCACCAGAA 236
|||||||| |||||||| || || ||| ||| | ||| | | | || || || ||||||
Sbjct 187 GTGGAACGTGCCTTATCGAGATT-GGAGAACTCGAAA-TCT-ATTTCAAGATCTCCAGAA 243
Query 237 CCAAAG-AGGATCCAAGACCGCAATGGAAGAAACCTGCAACTTCACTTTAGGACGCGAAT 295
|| ||| || || |||| || ||||||||||||||||| ||| ||| || || |||||
Sbjct 244 CCGAAGAAGAAT-CAAGGCCTTGATGGAAGAAACCTGCAAATTCGCTTCAGAACACGAAT 302
Query 296 GCCTCCTCACTTATTCACAGGCGGGAAAGTTGAGGGAGAGCGAGGCTCGGCAATTCATGT 355
||||||||| ||||||||||| |||||||| |||||||||| |||||| || ||||| ||
Sbjct 303 GCCTCCTCATTTATTCACAGGTGGGAAAGTCGAGGGAGAGCAAGGCTCAGCCATTCACGT 362
Query 356 GGTTCTTATAGATGCAAACACAGGAAATGTAGTTCAAACAGGAGAAGAATCAGCT-TCAA 414
||||||||||||||||||||| ||||||||| | ||||||||| |||||||| | |||
Sbjct 363 GGTTCTTATAGATGCAAACACCGGAAATGTAATCCAAACAGGACAAGAATCA-ATGGCAA 421
Query 415 AGCTGAATGTTGTAGTGTTAGAGGGTGACTTCAATGATGAAGACGATGAAGACTGGACCA 474
|||||| | |||| || ||||| || |||||||||||||| ||||| ||||| ||||| |
Sbjct 422 AGCTGAGTATTGTCGTCTTAGATGGAGACTTCAATGATGATGACGACGAAGATTGGACGA 481
Query 475 GAGAGCACTTTGAGAGCTTTGAAGTGAAAGAGCGAGAAGGGAAACGCCCCATCTTAACTG 534
|||| || |||||||||||||||||||| || || |||||||||| |||||||| ||||
Sbjct 482 GAGAACATTTTGAGAGCTTTGAAGTGAAGGAACGCGAAGGGAAACATCCCATCTTGACTG 541
Query 535 GGGACACACA-GATAG-TGCTTAAGGAAGGTGTGGGAACTCTTGGAGAACTTACTTTCAC 592
| |||| ||| | | | | ||||| |||||||| |||||||||||| |||||||||||||
Sbjct 542 GTGACAGACATG-T-GATACTTAAAGAAGGTGTAGGAACTCTTGGAAAACTTACTTTCAC 599
Query 593 TGACAACTCGAGTTGGA-TACGTAGCCGAAAGTTTAGGCTTGGTGTTAAGCCGGCTTCAG 651
|||||| ||||| |||| || | ||| |||||||||| ||||||||||| |||| ||
Sbjct 600 TGACAATTCGAGCTGGATTA-GGAGCAGAAAGTTTAGACTTGGTGTTAA---GGCTGCA- 654
Query 652 GGTATGGTGATAGCTTTTGCATTCGTGAAGCCAAAACAGAACCTTTTGCTGTCAAAGATC 711
| || | | ||| ||| |||||||| |||||||| || |||||||| |||||||
Sbjct 655 --T-CGG-G---G-TTTCACATACGTGAAGCTAAAACAGAGCCATTTGCTGTTAAAGATC 706
Query 712 ATAGAGGAGAACTATACAAGAAACATTATCCACCGGCTGTACACGATGAAGTCTGGAGAC 771
| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 707 ACAGAGGAGAACTATACAAGAAACATTATCCACCGGCTTTACATGATGAAGTCTGGAGAT 766
Query 772 TGGATCGAATAGCGAAAGACGGAGTGCTACACAAGAAGCTATTGAAAGCTAATATTGTGA 831
||||| |||||||||||| ||||||||||||||||||||| | ||| |||| || ||||
Sbjct 767 TGGATAAAATAGCGAAAGATGGAGTGCTACACAAGAAGCTACTAAAATCTAACATCGTGA 826
Query 832 CAGTCGAAGACTTCCTTC-GACTCCTTGTTAAGGATCCACAGAAGCTGAGAAATTTGCTT 890
| || |||||||||| | || | || | |||||||| ||||| || |||| |||||||
Sbjct 827 CTGTTAAAGACTTCCTACGGA-TACTCATGAAGGATCCGCAGAAACTAAGAAGTTTGCTT 885
Query 891 GGGAGTGGAATGTCGAATAGAATGTGGGAGAACACGGTGGAGCACGCAAAGACGTGCGTG 950
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 886 GGGAGTGGAATGTCAAATAGAATGTGGGATAACACGGTGGAGCACGCAAAGACCTGTGTA 945
Query 951 TTGGGTGGGAAGCTTTATGTGTTTTACACAGACCAAACTCACGCTACAGGCGTTGTCTTC 1010
|| |||||||| ||||| || | ||||||||| ||||| |||| || || ||||||||
Sbjct 946 TTAGGTGGGAAACTTTACGTCTATTACACAGATCAAACACACGAGACCGGTGTTGTCTTT 1005
Query 1011 AATCATATATATGAATTCCGAGGCCTAATTACAAACGGACAGTTCCTATCTCTAGAGTCT 1070
|||||||||||||| |||| |||||||||| | || || || ||| ||||||| || |||
Sbjct 1006 AATCATATATATGACTTCCAAGGCCTAATTGCCAATGGCCACTTCTTATCTCTGGAATCT 1065
Query 1071 CTTAACCATGACCAAAAGATTTCTGCAGACATTTTGGTGAAG-CTGGCTTACGAGAACTG 1129
||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1066 CTTAACCATGATCAAAAGATTTCTGCAGACATTTTGGTGAAGAC-AGCTTACGAGAACTG 1124
Query 1130 GCATAAAGCT-ATTGAGTATGACGGTAAGCTGTTGAATTGCTTACCAGTTGCCGAGAAGG 1188
|||||||| | |||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1125 GCATAAAG-TGGTTGAGTATGACGGTAAGCTGTTGAATTGCTTACCAGTTGCTAAGAATG 1183
Query 1189 AAATAAAAA 1197
|||||||||
Sbjct 1184 AAATAAAAA 1192
Score = 180 bits (97), Expect = 4e-44
Identities = 170/204 (83%), Gaps = 10/204 (5%)
Strand=Plus/Plus
Query 1603 GGTTTGGTCAGACTGATGAG-TCTTGTTACGGTTAT-AG-CATCCCGTACCAAGCTCAGA 1659
|||||||||| | |||||| || ||||||||| | || || | ||| |||||||||
Sbjct 1469 GGTTTGGTCACAGGGATGAGTTC-AGTTACGGTT-TCAGTGAT-CGGTATGAAGCTCAGA 1525
Query 1660 TCGATAACACG-TACCGAAGAGAACGTA-ATAGAGGCTCGGGGAAAGCTGTTGTTGGATG 1717
| ||||| | || | |||||| | | | ||||| | ||||||||||| || |||||
Sbjct 1526 TAGATAA-GGGTTATAGGAGAGAA-GGAGGTCGAGGCGCAGGGAAAGCTGTAGTGGGATG 1583
Query 1718 GCTAAAGCTTAAAGCTGCTTTGAGATGGGGTATCTTTATACGCAAGAAAGCTGCAGAGAG 1777
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 GCTTAAGCTTAAAGCTGCATTGAGATGGGGTATCTTTATACGCAAGAAAGCTGCAGAGAG 1643
Query 1778 AAGGCCTCAGATTGTGGAGATCGA 1801
|||||||||||||||||||||||
Sbjct 1644 GAGGCCTCAGATTGTGGAGATCGA 1667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78389724210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5