BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24310.1
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481288 jgi|Araly1|481288|fgenesh2_kg.4__348__AT2G24310.1 739 0.0
> Ahg481288 jgi|Araly1|481288|fgenesh2_kg.4__348__AT2G24310.1
Length=1224
Score = 739 bits (400), Expect = 0.0
Identities = 541/604 (90%), Gaps = 29/604 (5%)
Strand=Plus/Plus
Query 562 GAGACGACCCCTGTTTCTGCTTCACCGTCAGAAAAAGTTAGGGTTTTTGAGACGAAATGT 621
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 637 GAGACAACGCCTGTTTCTGCTTCACCGTCGGAAAAAGTTAGGGTTTTTGAGACGAAATGT 696
Query 622 CATTCTGATTCCGGTGATTCCGTTCCTTTGTCTTCTTCTCCGCCGTCTGTTGCGGCCGAC 681
| | || | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 697 C---C---TT-C--TGATTCCGTTCCTTTG---TCTTCTCCGCCGTCTGTTGCGGCCGAC 744
Query 682 GATGTTAGGGTTCCGGCAAAGCATCTTGATTCTGATTCTTCTCCTCCGACTGCAATCGGA 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GATGTTAGGGTTCCGGCAAAGCATCTTGATTCTGATTCTTCTCCTCCGACTGCAATCGGA 804
Query 742 AGAACTATGGTTTTAGTAAAACAACGAATTTCTGCTTCTG--A----CAATTCTGCTTCT 795
||||| |||| ||| |||||||||| |||||||||||| | | |||||||||||
Sbjct 805 AGAACCATGGGTTTGGTAAAACAACTTGTTTCTGCTTCTGTGAGTTTCGATTCTGCTTCT 864
Query 796 TCGTCTGCAAGTGAAGGGACCAAGGTCTCTAAAACTGAAAATTCTGGTG-AGGTTTTGCC 854
||||||||||||||||||| |||| |||| || |||||| |||||||| || ||| |||
Sbjct 865 TCGTCTGCAAGTGAAGGGATCAAGACCTCTGAAGCTGAAAGTTCTGGTGGAGATTT-GCC 923
Query 855 TTTTAAAGAAATTATCGAAGCTCTTCTTCGTAACAGTGGAGAGAAACTCAATGAAAGAGA 914
||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 924 ATTTAAAGAAATCATCGAAGCACTTCTTCGTAACAGTGGAGAGAATCTCAAAGAAAGAGA 983
Query 915 TGATAAAGTTAGCTATGTTGAGATTCTCAAGCAATGTGGTTTGAAATTCCCTAAATGATC 974
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 984 TGATAAAGTTAGCTATGTTGAGATTCTCAAACAATGTGGTTTAAAATTCCCTAAATGATT 1043
Query 975 C-T----GATT-AGTAAGTATTATCTTTCTCtgttttagtttgttctttttgtttctgtt 1028
| |||| |||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1044 GATTACAGATTTAGTAAGTATTATCTTTCTCTGTTTTAGTATGTTCTTGTTGTTTCTGTT 1103
Query 1029 tcgggattacgcgttcagatctttccttttttgttgATATGAATGCGTCGGGGTAAAAAG 1088
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1104 TCGGGATTACGCATTCAGATCTTTCCTTTTTTGTTGATATGAATGCGTCGGGGAAAAAA- 1162
Query 1089 AGTTGGGAGCTTTTTAATGTTCTGTAGCTTCAACTACAAGTAATGATAAGTATTTTGTTC 1148
|||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1163 AGTTGGGAGCTTTTG--TGTTCTGTTGCTTCAACTATAAGTAATGATAAGTATTTTGTTC 1220
Query 1149 GAAT 1152
|||
Sbjct 1221 AAAT 1224
Score = 645 bits (349), Expect = 0.0
Identities = 466/521 (89%), Gaps = 13/521 (2%)
Strand=Plus/Plus
Query 1 AAAATGGCGGAAAATGTTGGAAGCGACTCGAGCGAATTCGAAAGCATCTCTTCTTCTCAG 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AAAATGGCGGAAAATGTTGGAAGCGACTCGAGCGAATTCGAAAGCATCACTTCTTCTCAG 60
Query 61 AAATCTTACCTCAAAAACTGTCCTTTCGCCGGTCACGAAGCTCTTCCGACAAAATCGACG 120
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 61 AAATCTTACCTCAAAAACTGTCCTTTCGCCGGTCACGAACCTCTTCCGACGAAATCGACG 120
Query 121 GATTCTGACAACACTGAGGTTCTCGGGAACCAGATTTCTCCGGCGGTTGTTAAAACTCCG 180
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 121 GATTCCGACAACACTGAGGTTCTCGGAAACCAGATTTCTCCGGCGATTGTTAAAACTCCG 180
Query 181 ATTCTCTCGTTCTCTTCTCCGACTAGCCTCGATTCTATCAACGATGACGTCTTTCGTACT 240
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 181 GTTCTCTCGTTCTCTTCTCCGACTAGCCTCGATTCCATCAACGATGAAGTCTTCCGTACT 240
Query 241 CCTCCTGAGAACGCGTCTCTCTCCTCTGCCGCTGAATCGGAACCCAGAGTTGGGGTTTCG 300
|||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 241 CCTCCTGAGAACGCTTCTCTCTCCTCTGCCACTGAATCGGAACCCAGAGTTAGGGTTTCG 300
Query 301 GAGATTAAGCTCCAAGGAGGTTCGAATCTGACAACTCCGTTTTCT-ATGGCTGAGACGAC 359
||||||||||||| ||||||| | | ||| | | || |||| | ||| | || |
Sbjct 301 GAGATTAAGCTCCGAGGAGGTAC-A-TCT--C--C---GTCTTCTGA-GGCCAAAACAAT 350
Query 360 GCTTGTTTCTTCTTCGCCGTCTCTTCCGGCGGAAAATGTTAGGGTTTCAGA-GTCGAATT 418
|| ||||||||||| | |||||||| | | ||||||||||||||| || ||||||||
Sbjct 351 GCCCGTTTCTTCTTCATCTTCTCTTCCAGAAGCAAATGTTAGGGTTTC-GAAGTCGAATT 409
Query 419 TGAAATCTTCTTCTTCTACGGCCAAAACGACGCCTGTTTCTGCTTCACCGTCCGTAAATG 478
|||||||| | |||||||||||||||||| ||||||||||| |||| |||| || ||||
Sbjct 410 TGAAATCTCCGTCTTCTACGGCCAAAACGCCGCCTGTTTCTACTTCTCCGTTGGTGAATG 469
Query 479 CTAGGGTTTCGGAGTCGAATTTGAACTCTTCGTCTTCGACG 519
|||||||||||||||||||||||| ||| ||||||| |||
Sbjct 470 TTAGGGTTTCGGAGTCGAATTTGAAGTCTCCGTCTTCTACG 510
Score = 187 bits (101), Expect = 1e-46
Identities = 146/166 (88%), Gaps = 9/166 (5%)
Strand=Plus/Plus
Query 412 TCGAATTTGAAATCTTCTTCTTCTACGGCCAAAACGACGCCTGTTTCTGCTTCACCGTCC 471
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCGAATTTGAAATCTCCGTCTTCTACGGCCAAAACGACGCCTGTTTCTGCTTCACCGTCG 585
Query 472 GTAAATGCTAGGGTTTCGGAGTCGAATTTGAA--CTCT-TCGTCTTCGACG-A--C--C- 522
||||||| ||||||||||||| |||||||||| |||| || ||| || || | | |
Sbjct 586 GTAAATGTTAGGGTTTCGGAGACGAATTTGAAATCTCTGTCTTCTACGGCGGAGACAACG 645
Query 523 CCTGTTTCTGTTTCACCCTCAGAAAAAGTTAGGGTTTTTGAGACGA 568
|||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 646 CCTGTTTCTGCTTCACCGTCGGAAAAAGTTAGGGTTTTTGAGACGA 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5