BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24320.1
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320242 jgi|Araly1|320242|fgenesh1_pm.C_scaffold_4000299 1219 0.0
Ahg328615 jgi|Araly1|328615|fgenesh1_pm.C_scaffold_7000842 632 1e-180
> Ahg320242 jgi|Araly1|320242|fgenesh1_pm.C_scaffold_4000299
Length=906
Score = 1219 bits (660), Expect = 0.0
Identities = 817/888 (92%), Gaps = 30/888 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGC-AAAGTTCGCTTTCTTCCCACCGCCACCAACATAC-GACGTGGGTAAAGACG 58
||||| || ||| ||||||||||||||||||||||| |||||| || ||| |||||||||
Sbjct 22 ATGGCGGCGAAA-TTCGCTTTCTTCCCACCGCCACCTACATACGGA-GTGAGTAAAGACG 79
Query 59 AGGAGACCGGAAAGCTTATGTTCACCGGGATAACACCAGAAAAAAGCATGGATGTTCATC 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 80 AGGAGACCGGAAAGCTTATGTTCACCGGGATTACGCCAGAAAAAAGCATGGATGTTCATC 139
Query 119 AGCTTACCACCAAATCTGGCAACAAGGTCATTGCCACGTTTTGGAAACACCCTTTCTCTA 178
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 140 AGCTTACCACCAAATCAGGCAACAAGGTCATTGCCACTTTTTGGAAACACCCTTTTTCTA 199
Query 179 GATTCACTCTTCTTTATTCACATGGCAATGCCGCGGATCTCGGCCAAATGGTTGATCTCT 238
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 200 GATTTACTCTTCTTTATTCACATGGAAATGCCGCGGATCTCGGCCAAATGGTTGATCTCT 259
Query 239 TCATCGAGCTTCGAGCTCATCTCCGCGTCAACATTATGAGCTATGATTATTCAGGCTATG 298
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 260 TCATCGAGCTTCGTGCTCATCTCCGCGTCAACATTATGAGCTATGACTATTCAGGCTATG 319
Query 299 GAGCTTCAACAGGCAAGCCAACTGAGCTCAATACGTACTATGATATCGAGGCTGTGTACA 358
||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 320 GAGTTTCAACAGGCAAGCCAACTGAGCTCAATACATACTACGATATCGAGGCTGTGTACA 379
Query 359 ATTGCTTGAGGACCGAGTACGGGATCATGCAAGAGGAAATGATTCTATATGGTCAATCCG 418
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 380 ATTGCTTGAGGAGCGAGTACGGGATCACGCAAGAGGAAATGATTCTATATGGTCAATCTG 439
Query 419 TTGGAAGCGGACCAACATTGCACTTAGC-ATCTCGAGTAAAGAGACTAAGAGGGATTGTT 477
|||||||||||||||| ||||| ||||| | ||||| |||||||||||||||||||| ||
Sbjct 440 TTGGAAGCGGACCAACGTTGCATTTAGCGA-CTCGATTAAAGAGACTAAGAGGGATTATT 498
Query 478 CTTCATAGCGCAATTCTCTCCGGCCTCAGAGTTCTGTATCCTGTCAAAATGACATTCTGG 537
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 499 CTTCATAGCGCAATTCTCTCTGGCCTTAGAGTTCTATATCCTGTCAAAATGACATTCTGG 558
Query 538 TTCGATATGTACAAA--AA-C---AT-T-----G-----A-CA---AGA---TACGCCAT 573
|| |||||||||||| || | || | | | || ||| ||||||||
Sbjct 559 TTTGATATGTACAAAGTAAGCTTGATCTCAATTGTCTCTAACATTGAGAAGATACGCCAT 618
Query 574 GTAACATGCCCTGTTCTTGTCATACATGGAACAAAAGATGATATTGTGAATATGTCACAT 633
||||||||||||||||||||| ||||||||||||||||||| |||||||| || |||||
Sbjct 619 GTAACATGCCCTGTTCTTGTCTTACATGGAACAAAAGATGACATTGTGAACATCTCACAC 678
Query 634 GGGAAGCGATTGTGGGAACTAGCAAAGGACAAGTATGATCCATTGTGGGTAAAAGGAGGA 693
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 679 GGGAGGCGATTGTGGGAACTTGCAAAGGACAAGTATGATCCATTGTGGGTAAAAGGAGGA 738
Query 694 GGGCATTGCAACTTGGAAACATACCCCGAGTACATCAAGCATATGCGAAAGTTCATGAAC 753
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 739 GGGCATTGCAACTTGGAAACATACCCCGAGTACATAAAGCACGTGCGAAAGTTCATGAAC 798
Query 754 GCCATGGAGAAACTCGCTCTCAACAATCCACCAAACAAACAACAAAACGACGAGCCAAGC 813
|| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 799 GCAATGGAGAAACTCGCTCTCAACAATCCACCAAGCAAACAACAAAATGACGAGCCAAGC 858
Query 814 ATCAAGGAAACTAAACAAAATCGGTGCTTGAGATTCAGCAAAAGATAG 861
|||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 859 ATCAAGGAAACTAAGCAGAATCGGTGCTTGAGATTCAGCAAAAGATAG 906
> Ahg328615 jgi|Araly1|328615|fgenesh1_pm.C_scaffold_7000842
Length=885
Score = 632 bits (342), Expect = 1e-180
Identities = 696/865 (80%), Gaps = 31/865 (4%)
Strand=Plus/Plus
Query 2 TGGCTGCAAAGTTCGCTTTCTTCCCACC---GCCACCAACATACGACGT-GGGTAAAGAC 57
|||| || ||||| || |||||||| || |||| ||||||||| ||| | || ||
Sbjct 23 TGGCGGCCAAGTTTGCATTCTTCCCGCCGGAGCCAGCAACATACGGCGTAACG-AAGGAT 81
Query 58 GAGGAGACCGGAAAGCTTATGTTCACCGGGA-TAACACCAGA-AAAAAGCATGGATGTTC 115
|| ||||| || ||||| | ||| || ||| | | | || || || | |||| | |
Sbjct 82 GACGAGACAGGGAAGCTGGTCTTCGCC-GGAGTGTCGGCGGACAAGAA-CGTGGAAATCC 139
Query 116 ATCAGCTTACCACCAAA-TCTGGCAACAAGGTCATTGCCACGTTTTGGAAACACCCTTTC 174
| ||||| |||| |||| || || ||||| || |||||||||| |||| |||||||||
Sbjct 140 ACCAGCTCACCA-CAAAGTCCGGTAACAAAGTTGTTGCCACGTTCTGGAGACACCCTTT- 197
Query 175 T-CTAGATTCACTCTTCTTTATTCACATGGCAATGCCGCGGATCTCGGCCAAATGGTTGA 233
| | |||||||| ||||| ||||| ||||| ||||| || ||||| ||||||||||| ||
Sbjct 198 TGCGAGATTCACGCTTCTCTATTCCCATGGTAATGCTGCTGATCTTGGCCAAATGGTCGA 257
Query 234 TCTCTTCATCGAGCTTCGAGCTCATCTCCGCGTCAACATTATGAGCTATGATTATTCAGG 293
|||||||||||||| || |||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 258 GCTCTTCATCGAGCTCCGTGCTCATCTACGCGTCAACATCATGAGTTATGATTATTCAGG 317
Query 294 CTATGGAGCTTCAACAGGCAAGCCAACTGAGCTCAATACGTACTATGATATCGAGGCTGT 353
|||||||||||||||||| ||||| |||| |||| || || ||||| || ||||| ||
Sbjct 318 CTATGGAGCTTCAACAGGAAAGCCGTCTGAATTCAACACATATTATGACATAGAGGCAGT 377
Query 354 GTACAATTGCTTGAGGACCGAGTACGGGATCATGCAAGAGGAAATGATTCTATATGGTCA 413
||||||||||||||||| ||| || ||||||| ||||||||| || ||||| || || ||
Sbjct 378 GTACAATTGCTTGAGGAGCGATTATGGGATCAAGCAAGAGGAGATTATTCTGTACGGACA 437
Query 414 ATCCGTTGGAAGCGGACCAACATTGCACTTAGCATCTCGAGTA-AAGAGACTAAGAGG-G 471
|| || |||||||| |||||||||||| | || ||||| || ||||| || ||||| |
Sbjct 438 GTCTGTAGGAAGCGGTCCAACATTGCACATGGCTTCTCG-GTTGAAGAGGCTGAGAGGAG 496
Query 472 ATTGTTCTTCATAGCGCAATTCTCTCCGGCCTCAGAGTTCTGTATCCTGTCAAAATGACA 531
|||||||||| ||||| |||||||| || | ||||| ||||||||||||||||||||
Sbjct 497 -TTGTTCTTCACAGCGCCATTCTCTCTGGAATTAGAGTCCTGTATCCTGTCAAAATGACG 555
Query 532 TTCTGGTTCGATATGTACAAAAACATTGACAAGATACGCCATGT-AACATGCCCT-GTTC 589
||||||||||||| | ||||||||| |||||||| |||||||| ||| | ||| || |
Sbjct 556 CTCTGGTTCGATATATTCAAAAACATAGACAAGATTCGCCATGTCAAC-T-CCCAAGTCC 613
Query 590 TTGTCATACATGGAACAAAAGATGATATTGT-GAATATGTCACATGGGAAGCGATTGTGG 648
||||||| ||||| ||||| ||||| ||||| || | |||| || ||||| |||||||||
Sbjct 614 TTGTCATTCATGGCACAAATGATGAGATTGTTGATT-TGTCTCACGGGAAACGATTGTGG 672
Query 649 GAACTAGCAAAGGACAAGTATGATCCATTGTGGGTAAAAGGAGGAGGGCATTGCAACTTG 708
|| || || ||||| ||||| ||||| || ||||| || |||||||||||||||||| |
Sbjct 673 GAGCTGGCCAAGGAGAAGTACGATCCGTTATGGGTGAAGGGAGGAGGGCATTGCAACCTC 732
Query 709 GAAACATACCCCGAGTACATCAAGCATATGCGAAA-GTTCATGAACGCCATGGAGAAACT 767
|| || ||||| |||||||||||||| | | ||| |||| | ||||| |||||||||||
Sbjct 733 GAGACTTACCCTGAGTACATCAAGCACCT-CAAAAAGTTCGTAAACGCAATGGAGAAACT 791
Query 768 CGCTCTCAAC-AATCCACCAAACAAACAACAAAACGAC-GAGCCAAGCATCAAG-GAAAC 824
| |||| ||| ||||||||| |||||||| || | | ||||| || || || || ||
Sbjct 792 CTCTCT-AACCAATCCACCACCCAAACAACTAA-CTAATGAGCCTAGTAT-AACCGAGAC 848
Query 825 TAAACAAAATCGGTGCTTGAGATTC 849
||| || ||||||||||||| ||||
Sbjct 849 TAAGCACAATCGGTGCTTGAAATTC 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40944012858
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5