BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24350.1
Length=1996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481291 jgi|Araly1|481291|fgenesh2_kg.4__351__AT2G24350.1 2510 0.0
> Ahg481291 jgi|Araly1|481291|fgenesh2_kg.4__351__AT2G24350.1
Length=1742
Score = 2510 bits (1359), Expect = 0.0
Identities = 1629/1758 (93%), Gaps = 24/1758 (1%)
Strand=Plus/Plus
Query 46 AATTCACCGGCGACGAGCGAAATTTCGAGAATCGCGG-CGACTAGAAGTACAAGGAT-AG 103
||| ||||||||||||||||||||||||||||||||| || | |||||| ||||| | ||
Sbjct 1 AATCCACCGGCGACGAGCGAAATTTCGAGAATCGCGGCCG-CGAGAAGTGCAAGG-TCAG 58
Query 104 TG-ATACGAAGATGACTAAAGCAGTAGATGGACTCACATTTCCGATGTCGAGAGTATCGG 162
|| |||||||||||||| | | ||||||||||||||||| ||||||||||| |||||
Sbjct 59 TGAATACGAAGATGACT--A--A--AGATGGACTCACATTTCGGATGTCGAGAGAATCGG 112
Query 163 AGTCAGCTTCTCGACTTAAAACCATCATTTCCGATATGCTTCCTCGCTTTACTGACGATT 222
|||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 113 AGTCGGCTTCTCGACTTAAAACCTTCATCTCCGATATGCTTCCTCGCTTCACTGACGATT 172
Query 223 ACTCCGACGACCTCT-CTGAGTATGTTACGGTGCTTGTTTGTAATGGAAAGAGTCAGAGA 281
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 ACTCCGACGACCT-TGCTGAGTATGTTACGGTGCTTGTTTGTAATGGAAAGAGTCAGAGA 231
Query 282 CAGGCAAGCGAAGATTTGGAGGCATTTCTTAAGGAGCAATCTTGGAAATTTGTTGTCTGC 341
||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 232 CAGGCAAGCGAAGATTTGGAGGCATTTCTTAGGGAACAATCTTGGAAATTTGTTACCTGC 291
Query 342 TTGTGGGAGCTTCTAGTGAAGTACTTCTCTCAAAGTAATTCTGCTTCTGGACCTAAGACT 401
|| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 292 TTATGGGAGCTTCTAGTGAACTACTTCTCTCAAATTAATTCTGCTTCTGGACCTAAGACT 351
Query 402 GATGTTGACTTTGGC-TCTAATGATACTCTAATCAAACAAGGTTTAAGCTCCAGAAAGTA 460
| ||||||||||||| | ||||||||||||||| |||||||||||||||||| |||| |
Sbjct 352 GCTGTTGACTTTGGCGT-TAATGATACTCTAATTGAACAAGGTTTAAGCTCCAAAAAGCA 410
Query 461 TGATGATTATGATTGCAAAGCTGCCGATGGTACTAATTCGATGAATGAACAGCTGATATC 520
|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 411 TGATGATTATGATTGCAAAGCTGCTGGTGCTACTAATTCGATGAATGAACAGCTGATATC 470
Query 521 AGTTACTGCTCCCATAGATGACATTGAGGCTCCTGTATCACCAAAAGTTGAAAAAATGAA 580
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGTTACTGCTCCCATAGAAGACATTGAGGCTCCTGTATCACCAAAAGTTGAAAAAATGAA 530
Query 581 GATGTCACGACAAGAGCTCATTGATAGCCCTTGTACAAGGGCACGGCGAAGAAAGAAAGA 640
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 531 GATGTTACGACAAGAGCTCATTGATAGCCCTTGTAGAAGGGCACAACGAAGAAAGAAAGA 590
Query 641 AAATTGGAACTCGTCTGGTTACTCTAGAAAAGTACTGCGCTCTGTCATTGTTTCAGCCAC 700
| ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 591 AGATTGGAACTCGTCTGGTTACTCTAGAAAAATACTGCGCTCGGTCATCGTTTCAGCCAC 650
Query 701 TCAGCAACCATGTGATAGGAATCCTGCTAAATATGAAAAGTCTATGAATGAAAGGAGTAG 760
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TAAGCAACCATGTGATAGGAATCCTGCTAAATATGAAAAGTCTATGAATGAAAGGAGTAG 710
Query 761 AACCCTAAAGAAGCGCCCATACTCACCAGAAAGAGAATTGGATTCTCGGTTTGCTCCT-T 819
|| ||||||||||| |||||||| |||||||||||| ||||||||| ||||| |||| |
Sbjct 711 AATCCTAAAGAAGCACCCATACTTGCCAGAAAGAGAACTGGATTCTCAGTTTGTTCCTAT 770
Query 820 CAGGAAGAGCTGTGTCTGCAAGATACCATGATGCATCTCTACACCAAGAAACGGAGCCTC 879
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 771 -AGGAAGAGCTGTGTCTGCAAGATACCATGATGCATCTCCACACCAAGAAACGGCGCCTC 829
Query 880 ATGTTAGTGTTTGGGATCGTTTGGGCCGAGCAAGCTCCGAATGTGTTCTTGACACAGAAA 939
|||||||||| |||||||||||||| |||||||||||| || ||||||||||| ||||||
Sbjct 830 ATGTTAGTGTCTGGGATCGTTTGGGACGAGCAAGCTCCAAACGTGTTCTTGACTCAGAAA 889
Query 940 GCCGTACATTGTCTAAGTTTGGTATCCAGACACGTG-AAACAAAAGTGCATCAGCAGCAT 998
|||||||||||||||||| ||||||| || ||| || |||| |||| | ||||||||||
Sbjct 890 GCCGTACATTGTCTAAGTCTGGTATCAAGGCACATGAAAAC-AAAGGGGTTCAGCAGCAT 948
Query 999 GGACCAGTATTTCCTGCAGCGTATAGTGAACAACATAGCGAGATATTTCAAAGAGAAGTT 1058
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GGACCAGTATTTCCTGAAGTGTATAGTGAACAACATAGCGAGATATTTCAAAGAGAAGTT 1008
Query 1059 CTTGCAGTTGGTTACAGGCACAGAGTTCCCCAATTCGATAAAGATAGGAAACCCAAGAGT 1118
| ||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||
Sbjct 1009 CCTGCAGTTGGTTACAGGCACAGAGTTTCCCAATCCGATAAAGCTAGGAAACCTGAGAGT 1068
Query 1119 GAAACTATCACATCCACTGAACCGCATATTGCATATAACCTCAGCAGAAAGAGACGTTAT 1178
| || |||||||||||||||||||||||||||||||||||| | | ||||||| ||||||
Sbjct 1069 GGAATTATCACATCCACTGAACCGCATATTGCATATAACCTGAACCGAAAGAGGCGTTAT 1128
Query 1179 GGCATGGTCAGCCCCAATTCAGGAGAGTTTAGCTA-TGTTCCCCAATATAAGCAAGCTGA 1237
||||| |||| |||||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 1129 GGCATCGTCAACCCCAATTCAGGAGAGTTTAGC-AGTGTTCTCCAATATAAGCAAGCTGA 1187
Query 1238 ACAAGATTTTGAAAAGCCAAGCCTGCTCTCCCATCAGTCAACAAAGCAAGATATTTTTTC 1297
| | ||| |||||||||||||||| |||||| ||||||| ||||||| |||||| |||||
Sbjct 1188 AGAGGATGTTGAAAAGCCAAGCCTTCTCTCCTATCAGTCCACAAAGCCAGATATCTTTTC 1247
Query 1298 AGAAATAAAGAACGTGAAAGAAAAGATGCAAGAACTAGAACTCCGAATTATTCAATCAAA 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AGAAATAAAGAACGTGAAAGAAAAGATGCAAGAACTAGAACTCCGAATTATTCAATCAAA 1307
Query 1358 GCAGTTGAAGAAACAGAAAGTTGAAGAACGCAAACCCTCACCACAATCTGGCGAATCACA 1417
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1308 GCAGTTGAAGAAACAGAAAGTTGAAGAACTCAAACCCTCACCACAATCTGGCGAATCACA 1367
Query 1418 GTATCAGGAAGATGTCTCAGAATCAAGAGTCATACATGTTACTAACGTATACTATGCAGC 1477
||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1368 GTATCAGCAAGATGTCACAGAATCAAGAATCATACATGTTACTAACGTAAACTATGCAGC 1427
Query 1478 AAAGAAAGAAGCTATATCAATGTTCTTCAGCAGCAAGTGTGGAGCTGTCCAAAATGTTAT 1537
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 1428 AAAGAAAGAAGCTATATCAATGTTCTTCAGCAGCAAGTGTGGAGCTGTCGAAAACGTGAC 1487
Query 1538 AGTTGTAACTGATCCAGTAACTCGCCATCCAAAGGGTACTGCTTTTGTGACTTTTGCTAC 1597
| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1488 AATTGTAACTGATCCAGTAACTCGGCATCCAAAGGGTTCTGCTTTTGTGACTTTTGCTAC 1547
Query 1598 AAAGGAGTCAGTTGGCAAAGCAGTAGCTCTGAGCGGCACAATGTTCTATTCAAGACCCAT 1657
||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1548 AAAGGAGTCAGTTAACCAAGCAATAGCTCTGAGCGGCACAATGTTCTATTCAAGACCCAT 1607
Query 1658 CAAGGTTCGCATGCACGTGATAGCTTCTGGAGTAGTGTCAGCAGCACCACAGATAGTTAC 1717
||||||| | | ||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 1608 CAAGGTTGGGAGGCACGTGATAGCTTCTGGAGTAGTGTCAGCA-C-C-ACAGATAGTTAC 1664
Query 1718 TGGAAGTTAAACCCAAATGAATGGTAATACACAAAGAGCCTACAAACATCACCTTAACAA 1777
||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||| | |
Sbjct 1665 TGGAAGTTAAACCAAAAGGAATGGTAATACACAAAGAGCCTAAAAACATCACCTTAGCGA 1724
Query 1778 CGCCGTTGTACAGTCCCT 1795
| ||||||||||||||||
Sbjct 1725 CACCGTTGTACAGTCCCT 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75037782650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5