BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24370.1
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481293 jgi|Araly1|481293|fgenesh2_kg.4__353__AT2G24370.1 3709 0.0
Ahg491618 jgi|Araly1|491618|fgenesh2_kg.7__1051__AT4G31230.1 1269 0.0
Ahg497409 jgi|Araly1|497409|fgenesh2_kg.365__1__AT5G61550.1 86.1 1e-15
Ahg496318 jgi|Araly1|496318|fgenesh2_kg.8__2134__AT5G61550.1 86.1 1e-15
> Ahg481293 jgi|Araly1|481293|fgenesh2_kg.4__353__AT2G24370.1
Length=2365
Score = 3709 bits (2008), Expect = 0.0
Identities = 2247/2366 (95%), Gaps = 2/2366 (0%)
Strand=Plus/Plus
Query 1 ATGTGGATGCCGAAAAACAATAACGTGGGAGTCAAGGAAGGAGGGTCTAGCGGAGTTGTA 60
|||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 1 ATGTGGATGCCGAAAAACAATAACGTGGGAGTCAAGGAAGGAGGATCGAGCGGAATTGTA 60
Query 61 GCTGTTGCAATAGACAAAGACAAAAGCAGCCAACACGCTCTTAAATGGGCTGTTGATAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GCTGTTGCAATAGACAAAGACAAAAGCAGCCAACACGCTCTTAAATGGGCTGTTGATCAT 120
Query 121 TTGTTGCAGCGAGGCCAATCCGTCATTCTTGTCCACGTCAAGCTTCGACCTTCTCCATTG 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TTGTTGCAGCGAGGCCAATCCGTCATTCTCGTCCACGTCAAGCTTCGACCTTCTCCATTG 180
Query 181 AATAATAGCGCTTCTCTTCATGCTTCCTCTGCAAAGCTGAGCCAAGATTCTTCATTGGTA 240
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 AATAATAGCCCTTCTCTTCATGCTTCTTCTGCAAAGCTGAGCCAAGATTCTTCATTGGTA 240
Query 241 TGCAGAGATCCAGAAGGCATTTCCAAAGAAATATTTCTTCCTTTCCGTTGCTTCTGCACA 300
|||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||
Sbjct 241 TGCAGAGATCCAGAAGGCATTTCCAAGGAGTTATTCCTTCCTTTTCGTTGCTTCTGCACC 300
Query 301 CGCAAAGACATTCAATGCCAAGATGTGTTGCTTGAGGAGTCCGATGTTGCCAAAGCATTG 360
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CGCAAAGATATTCAATGCCAAGATGTGTTGCTTGAGGAGTCCGATGTTGCCAAAGCGTTG 360
Query 361 GTCGAATACGTAAACCAAGCGGCCATTGAGGTTTTAGTAGTTGGTTCCTCCAGCAAAGGT 420
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GTCGAATACGTAAACCAAGCCGCCATTGAGGTTTTAGTAGTTGGTTCCTCTAGCAAAGGT 420
Query 421 GGTTTTCTCAGGTTCAACAAACCTACAGATATTCCAGGCAGCATAACAAAAAACGCTCCT 480
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 421 GGTTTTCTCAGGTTCAACAAGCCTACAGATATTCCAGGCAACATAACAAAAAACGCGCCT 480
Query 481 GATTTCTGCACGGTTTATATCATTTCCAAAGGAAAGATTCAAACAATGAGATCAGCTTCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATTTCTGCACGGTTTATATCATTTCCAAAGGAAAGATTCAAACAATGAGATCAGCTTCT 540
Query 541 CGTTCTGCACCCATGACTGCTCCTCTACGCAGTTCAGTTCAACCACCTAGCTTAAAGCCT 600
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 541 CGTTCTGCACCCATGACTGCTCCTCTACGCAGTCCGGTTCAACCACCTAGCTTAAAGCCT 600
Query 601 CCTCAACCTATGCCTTCTACTTCCGCTAACAGTCTGCGAGCCGATAGACGGTCTTTTGAG 660
|||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 601 CCTCAACCTATGCCTTCTACTTTCGCTAACAGTATGCGAGCCGCTAGACGGTCTTTTGAG 660
Query 661 TCTAACCAACGAAGGTCTGTAGAAGATCAACAACGCAGGTCTATGGAGGATCAACAACGC 720
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 661 TCTAACCAACGAAGGTCTGTCGAAGATCAACAACGTAGGTCTATGGAGGATCAACAACGG 720
Query 721 AGGTCAATAGACGATCAATCAGAGTCCTTCAGATCTCCTTTTACAAGAAGAGGCAATGGT 780
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGGTCAATGGAGGATCAATCAGAGTCCTTCAGATCTCCTTTTACAAGAAGAGGCAATGGG 780
Query 781 AGATCATACGGAGATTTAACTGTTCCAGAATCAGACATATCCTTTATCAGTTCCGGAAGA 840
| ||||||||| ||| | ||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 781 AAATCATACGGTGATCTGTCTGTTCCGGAATCAGACATATCTTTTATTAGTTCTGGAAGA 840
Query 841 CCAAGCATTGACCGTATCTTCCCTTCTCTATATGACAACAATGATCCAAGCC-GAACTCC 899
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 841 CCAAGCATTGACCGTATCTTCCCTTCTCTATATGACAACAATGATCCAA-CCAGAACTCC 899
Query 900 TCCTAGGCTTTCAAATTTCTCAGACATGGACTATAGTTCTAGCCTTGATCAGTCTTCCAA 959
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 TCCTAGGCTGTCAAATTTCTCAGACATGGACTATAGTTCTAACCTTGATCAGTCTTCCAA 959
Query 960 CTATGGAAGGAGATCAGTGGATATGAACTCACCCACTGATTTCGAGAGCGAAAGATTTTC 1019
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 960 CTATGGAAGGAGATCAGTGGATTTGAACTCACCTACTGATTTCGAGAGCGAAAGATTTTC 1019
Query 1020 ATCCGCCTCTCAATCAATAGATGATGTAGAGGCTGAGATGAGGAGGCTTAAACTGGAGTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATCCGCCTCTCAATCAATAGATGATGTAGAGGCTGAGATGAGGAGGCTTAAACTGGAGTT 1079
Query 1080 GAAGCAGACTATGGAAATGTATAGTACAGCTTGCAAAGAAGCACTCACAGCAAAACAAAA 1139
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAAGCAGACTATGGAAATGTACAGTACAGCTTGCAAAGAAGCACTCACAGCAAAACAAAA 1139
Query 1140 GGCGACTGAGCTTCAACGTTGGAAGTTAGAAGAAGAGAGAAAACTAGAAGAAGCGAGAAA 1199
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| || ||| |
Sbjct 1140 GGCGACGGAGCTTCAGCGTTGGAAGTTAGAAGAAGAGAGGAAACTAGAAGAGGCAAGACA 1199
Query 1200 TGCAGAGGAAGCAGCATTAGCCATTGCAGAGAAAGAGAAAGCAAAGTCAAAAGCAGCTAT 1259
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1200 TGCAGAGGAAGCAGCATTAGCCATCGCAGAGAAAGAGAAAGCAAAGTCGAAAGCGGCTAT 1259
Query 1260 GGAGGCAGCTGAAGCAGCTCAAAGGATTGCTGAATTAGAGGCTAAGAAGAGAGTCAACGC 1319
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1260 GGAGGCAGCTGAAGCAGCTCAAAGAATTGCTGAATTAGAGGCTAAGAAGAGAGTCAACGC 1319
Query 1320 GGAAATGAAAGCTTTAAAAGAGTCAGAGGAGAAAACAAAGGCTCTTACCGCTTTAGCAAA 1379
||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1320 GGAAATGAAAGCTCTAAAGGAGTCTGAGGAGAAAACAAAGGCTCTTACTGCTTTAGCAAA 1379
Query 1380 CTCAGATGTCAGGTATAGGAAGTACTCCATTGAAGATATTGAGCTTGCAACAGAGTTTTT 1439
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1380 CTCAGATGTCAGGTATAGGAAGTACTCCATTGAAGAGATTGAGCTTGCAACCGAGTTTTT 1439
Query 1440 CGCTGAGAAATATAAGATTGGAGAAGGTGGTTATGGACCTGTCTACAAATGTTATCTTGA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CGCTGAGAAATATAAGATTGGAGAAGGTGGTTATGGACCTGTCTACAAATGTTATCTTGA 1499
Query 1500 TCATACACCAGTGGCTGTTAAAGTTCTTCGTCCCGATGCAGCTCAAGGAAGATCGCAATT 1559
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1500 TCATACACCAGTGGCTGTTAAAGTTCTTCGTCCTGATGCAGCTCAAGGAAGATCTCAGTT 1559
Query 1560 TCAACAAGAGGTCGAGGTATTGAGCTGCATTAGGCATCCGAACATGGTTCTACTTCTTGG 1619
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1560 CCAACAAGAGGTTGAGGTATTGAGCTGCATTAGGCATCCTAACATGGTTCTACTTCTTGG 1619
Query 1620 GGCTTGTCCGGAATGCGGATGTTTAGTCTACGAGTTCATGGCTAATGGGAGCTTAGAAGA 1679
||| || |||||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 1620 GGCATGCCCGGAATGTGGATGTTTAGTCTACGAGTTCATGGCCAACGGAAGCTTAGAAGA 1679
Query 1680 TCGTCTTTTCAGACTAGGAAACAGTCCACCTCTCTCGTGGCAGATGAGATTTAGAATCGC 1739
||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 1680 TCGTCTTTTCAGATTAGGAAACAGCCCACCTCTCTCGTGGCAGATGAGGTTCAGAATTGC 1739
Query 1740 TGCAGAGATAGGCACTGGATTGTTGTTCTTGCACCAAGCTAAACCTGAGCCTCTTGTTCA 1799
||| ||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||
Sbjct 1740 TGCTGAGATTGGCACTGGACTGTTGTTCTTGCACCAGGCTAAACCTGAGCCTCTAGTTCA 1799
Query 1800 CCGTGATCTCAAACCAGGAAACATCTTGCTAGACCGTAACTTCGTCAGCAAGATATCTGA 1859
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1800 CCGTGATCTCAAACCAGGAAACATCTTGCTAGACCGTAACTTCGTCAGCAAGATTTCTGA 1859
Query 1860 TGTTGGTTTAGCTAGATTGGTCCCTCCAACAGTTGCAGACACAGTGACACAATACCGCAT 1919
|||||||||||| || | ||||||||| | ||||||||||| |||||||| ||||| ||
Sbjct 1860 TGTTGGTTTAGCCAGGCTAGTCCCTCCATCGGTTGCAGACACGGTGACACAGTACCGAAT 1919
Query 1920 GACTTCAACCGCTGGCACATTCTGTTATATCGACCCAGAGTATCAACAAACAGGAATGTT 1979
|||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1920 GACTTCAACCGCGGGCACGTTCTGTTACATCGATCCAGAGTATCAGCAAACAGGAATGTT 1979
Query 1980 GGGTGTGAAATCAGACATTTACTCACTTGGAATTATGTTTCTACAGTTGATAACAGCAAA 2039
|||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 1980 GGGTGTGAAATCCGACATTTACTCACTCGGCATTATGTTTCTGCAGTTGATAACAGCAAA 2039
Query 2040 ACCACCAATGGGTCTAACTCATTATGTCGAGAGAGCACTAGAGAAAGGAACTTTGGTTGA 2099
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct 2040 ACCACCAATGGGGCTAACCCATTATGTCGAGAGAGCACTCGAGAAAGGAACTTTGGCTGA 2099
Query 2100 TTTACTCGATCCAGTTGTTTCTGATTGGCCAATGGAAGACACTGAAGAGTTTGCTAAATT 2159
|||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2100 TTTACTTGATCCAGCTGTTTCTGATTGGCCAATGGAAGACACAGAAGAGTTTGCTAAATT 2159
Query 2160 AGCTCTTAAATGTGCAGAGCTAAGGAGAAAAGATAGACCTGATCTTGCTAAAGTTATTTT 2219
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 2160 AGCTCTTAAATGTGCAGAGCTAAGGAGAAAAGACAGACCTGATCTTGCTAAAGTCATATT 2219
Query 2220 GCCTGAGCTAAATAGATTAAGAACACTTGCTGATGAATCATCACATTCTGTAGTAGTCGG 2279
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 2220 GCCTGAGCTAAACAGATTAAGAACACTTGCTGACGAATCATCACATTCTGTAGTAGTCAG 2279
Query 2280 CAATAGCCCTCTACCATCTCCAACTGGTAGCCAAAGTTCTTTGAAACTGGAACATATGAG 2339
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 CAATAGCCTTGTACCATCTCCAACTGGTAGCCAAAGTTCTTTGAAACTGGAACATATGAG 2339
Query 2340 TGGTGCTTCTATCTCAGTGCCTCAGT 2365
||||||||||||||||||||||||||
Sbjct 2340 TGGTGCTTCTATCTCAGTGCCTCAGT 2365
> Ahg491618 jgi|Araly1|491618|fgenesh2_kg.7__1051__AT4G31230.1
Length=2469
Score = 1269 bits (687), Expect = 0.0
Identities = 1337/1646 (81%), Gaps = 64/1646 (4%)
Strand=Plus/Plus
Query 711 TCAACAACGCAGGTCAATAGACGATCAATCAGAGTCCTTCAGATCTCCTTTTACAAGAAG 770
||| || |||||||| | |||||||| ||||| |||||||| || || | || |||||
Sbjct 663 TCAGCATCGCAGGTCCCTTGACGATCAGTCAGATTCCTTCAGGTCACCCTACACTAGAAG 722
Query 771 AGGC---AATGGTAGATCATACGGAGATTTAACTGTTCCAGAATCAGACATATCCTTTAT 827
|||| ||||| |||||||| ||||| || | | || || || ||||||| ||| |
Sbjct 723 AGGCTTGAATGGGAGATCATATGGAGACCTATCAATCCCGGATTCTGACATATGCTTCAA 782
Query 828 CAGTTCCGGAAGACCAAGCATTGACCGTATCTTC-CCTT-CTCTATATGACAACAATGAT 885
||| || ||||||||||||||||| || | | || |||| || | || ||||| |||
Sbjct 783 CAGCTCTGGAAGACCAAGCATTGAGCGCAAC-TCTCCTTCCT-TGTACGACAATTCGGAT 840
Query 886 CCAAGCCGAACTCCTCCTAGGCTTTCAAATTTCTCAGACATGGACTATAGTTCTAGCCTT 945
|||| ||| |||||||| ||||| ||||||||||||||||| |||||| | ||| | |
Sbjct 841 CCAAACCGGACTCCTCCAAGGCTATCAAATTTCTCAGACATTGACTAT-G--GTAG-C-T 895
Query 946 GATC-AGTC-TTCCAACTAT-GGAAGGAGATCAGTGGATATGAA-CTCACCCACTG-ATT 1000
|| |||| | | || | |||||||| ||| ||||||| || |||||| |||| ||
Sbjct 896 --TCGAGTCAAT-GACCT-TCGGAAGGAGGTCAATGGATAT-AAGCTCACCAACTGCTTT 950
Query 1001 -T---C--G---A---GAG--CGAAAGATTTTCATCCGCCTCTCAATCAATAGATGATGT 1046
| | | | ||| ||||| |||||||| || |||||| | ||||||||
Sbjct 951 CTCAACTGGCTCATTTGAGAATGAAAGGTTTTCATCGGCTTCTCAAGGAGGGGATGATGT 1010
Query 1047 AGAGGCTGAGATGAGGAGGCTTAAACTGGAGTTGAAGCAGACTATGGAAATGTATAGTAC 1106
||||||||||||||||||||||||||||||| |||| || || ||||||||||| |||||
Sbjct 1011 AGAGGCTGAGATGAGGAGGCTTAAACTGGAGCTGAAACAAACGATGGAAATGTACAGTAC 1070
Query 1107 AGCTTGCAAAGAAGCACTCACAGCAAAACAAAAGGCGACTGAGCTTCAACGTTGGAAGTT 1166
||||||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 1071 AGCTTGCAAGGAAGCTCTCACAGCAAAACATAAGGCAACAGAGCTTCAACGCTGGAAGTT 1130
Query 1167 AGAAGAAGAGAGAAAACTAGAAGAAGCGAGAAA-T-GCAGAGGAAGCAGCATTAGCCATT 1224
|| |||||| || ||| | ||||| || | || | ||||||||||| ||||||||||||
Sbjct 1131 AGCAGAAGAAAGGAAATTCGAAGAGGC-A-AAGCTTGCAGAGGAAGCTGCATTAGCCATT 1188
Query 1225 GCAGAGAAAGAGAAAGCAAAGTCAAAAGCAGCTATGGAGGCAGCTGAAGCAGCTCAAAGG 1284
|| ||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 1189 GCGGAGAAGGAGAAAGCAAAGTCCAAAGCAGCAATGGAAGCAGCTGAAGCAGCTCAAAGG 1248
Query 1285 ATTGCTGA-ATTAGAGGCTAAGAA-GAGAGTCAACGCGGAAATGAAAGCTTTAAAAGAGT 1342
|||||||| || ||| | ||| ||||||| | || |||||||||||| | || || |
Sbjct 1249 ATTGCTGATATC-GAGTCCC-GAAAGAGAGTCGATGCAGAAATGAAAGCTCTGAAGGAAT 1306
Query 1343 CAGAGGAGAAAACAAAGGCTCTT-ACCGCTTTAGCAAACTCAGATGTCAGGTATAGGAAG 1401
|||||| || |||||| || | | | ||||||||||||||||||||||| || ||||||
Sbjct 1307 CAGAGGCGAGAACAAAAGC-CGTGAATGCTTTAGCAAACTCAGATGTCAGATACAGGAAG 1365
Query 1402 TACTCCATTGAAGATATTGAGCTTGCAACAGAGTT-TTTCGCTGAGAAATATAAGATTGG 1460
|||||||| || || |||||| |||||||||||| ||| | ||||||||| ||||| ||
Sbjct 1366 TACTCCATCGAGGAGATTGAGGATGCAACAGAGTTCTTT-GATGAGAAATACAAGATCGG 1424
Query 1461 AGAAGGTGGTTATGGACCTGTCTACAAATGTTATCTTGATCATACACCAGTGGCTGTTAA 1520
|||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct 1425 AGAAGGCGGTTATGGACCTGTCTACAAGTGTTATCTGGATCACACACCTGTGGCTGTGAA 1484
Query 1521 AGTTCTT-CGTCCC-GATGCAGCTCAAGGAAGATCGCAATTTCAACAAGAGGTCGAGGTA 1578
|| | || || ||| |||||||||||||| || || || ||||| |||||||| || ||
Sbjct 1485 AGCT-TTGCG-CCCAGATGCAGCTCAAGGCAGGTCACAGTTTCAGCAAGAGGTTGAAGTG 1542
Query 1579 TTGAGCTGCATTAGGCATCCGAACATGGTTCTACTTCTTGGGGCTTGTCCGGAATGCGGA 1638
|| ||| | || ||||| || ||||||||||| || ||||| || || || ||||| |||
Sbjct 1543 TTAAGCAGTATAAGGCACCCTAACATGGTTCTTCTGCTTGGAGCATGCCCAGAATGTGGA 1602
Query 1639 TGTTTAGTCTACGAGTTCATGGCTAATGGGAGCTTAGAAGATCGTCTTTTCAGACTAGGA 1698
|| ||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1603 TGCTTAGTGTATGAGTTCATGGCTAATGGGAGCTTAGAAGACCGTCTTTTCAGAGAAGGA 1662
Query 1699 AACAGTCCACCTCTCTCGTGGCAGATGAGATTTAGAATCGCTGCAGAGATAGGCACTGGA 1758
|||| || || ||||| ||||| | ||||| ||||| ||||||||||| ||||||| |
Sbjct 1663 GACAGCCCGCCCCTCTCTTGGCAAACAAGATTCAGAATTGCTGCAGAGATCGGCACTGTA 1722
Query 1759 TTGTTGTTCTTGCACCA-AGCTAAACCTGAGCCTCTTGTTCACCGTGATCTCAAACCAGG 1817
|||||||| | ||||| | ||||||| || || || ||||||||||||||||||||||
Sbjct 1723 CTGTTGTTCCTCCACCAGA-CTAAACCAGAACCACTGGTTCACCGTGATCTCAAACCAGC 1781
Query 1818 AAACATCTTGCTAGACCGTAACTTCGTCAGCAAGATAT-CTGATGTTGGTTTAGCTAGAT 1876
||| ||||| |||||||| ||||| ||||||||| | | |||||||||| || |||||
Sbjct 1782 AAATATCTTACTAGACCGCAACTTTGTCAGCAAGGT-TGCTGATGTTGGCTTGGCTAGGC 1840
Query 1877 TGGTCCCTCCAACAGTTGCAGACACAGTGACACAATACCGCATGACTTCAACCGCTGGCA 1936
||||||||||| | |||||| |||| ||||| |||||||||||||| ||||| |||||||
Sbjct 1841 TGGTCCCTCCATCCGTTGCAAACACCGTGACGCAATACCGCATGACATCAACTGCTGGCA 1900
Query 1937 CATTCTGTTATATCGACCCAGAGTATCAACAAACAGGAATGTTGGGTGTGAAATCAGACA 1996
|||| || || |||||||||||||||||||| || || ||| ||||||||||||| ||||
Sbjct 1901 CATTTTGCTACATCGACCCAGAGTATCAACAGACGGGGATGCTGGGTGTGAAATCTGACA 1960
Query 1997 TTTACTCACTTGGAATTATGTTTCTACAGTTGATAACAGCAAAACCACCAATGGGTCTAA 2056
|||| || ||||| ||||||||||| ||||| ||||||| ||||||||| ||||||||||
Sbjct 1961 TTTATTCGCTTGGCATTATGTTTCTGCAGTTAATAACAGGAAAACCACCTATGGGTCTAA 2020
Query 2057 CTCATTATGTCGAGAGAGCACTAGAGAAAGG-AACTTTGGTTGATTTACTCGATCCAGTT 2115
| |||||||| || ||||| || ||||| || || |||| ||||| |||||||| | |
Sbjct 2021 CCCATTATGTGGAAAGAGCCCTCGAGAAGGGTAA-TTTGAAAGATTTGCTCGATCCTGCT 2079
Query 2116 GTTTCTGATTGGCCAATGGAAGACACTGA-AGAGTTTGCTAAATTAGCTCTTAAATGTGC 2174
|| ||||||||||| | ||||| || | ||||||||| || || ||||| || || ||
Sbjct 2080 GTGTCTGATTGGCCTGTTGAAGATACC-ACAGAGTTTGCCAAGTTGGCTCTCAAGTGCGC 2138
Query 2175 AGAGCTAAGGAGAAAAGATAGACCTGATCTTGCTAAAGTTATTTTGCCTGAGCTAAATAG 2234
|||| ||||| ||||||| |||||||||||| | |||||||| ||||| ||||| || ||
Sbjct 2139 AGAGATAAGGCGAAAAGACAGACCTGATCTTTCCAAAGTTATATTGCCAGAGCTCAACAG 2198
Query 2235 ATTAAGAACACTTGCTGATGAATCATCACATTCTGTAGTAGTCGGCAATAGCCCTCT-AC 2293
||||||| ||||||||| |||||| || | ||| ||||||| |||||||| | ||
Sbjct 2199 ATTAAGAGTACTTGCTGAAGAATCAACAAAGACTGCAGTAGTCATTAATAGCCC-CGGAC 2257
Query 2294 CATCTCCAACTG-GTAGCCAAAGTTC 2318
|| | || |||| | || ||||||||
Sbjct 2258 CAACCCCCACTGAG-AGTCAAAGTTC 2282
Score = 326 bits (176), Expect = 6e-88
Identities = 495/643 (77%), Gaps = 46/643 (7%)
Strand=Plus/Plus
Query 61 GCTGTTGCAATAGACAAAGACAAAAGCAGCCAACAC-GCTCTTAAATGGGCTGTTGATAA 119
||||| || || |||| |||||||| ||||||| || ||||| |||||||||||||||||
Sbjct 55 GCTGTGGCCATCGACAGAGACAAAAACAGCCAA-ACTGCTCTGAAATGGGCTGTTGATAA 113
Query 120 TTTGTTGCAGCGAGGCCAATCCGTCATTCTTGTCCACGTCAAGCTTCGACCTTC-TCCAT 178
|||||||||| ||||||| ||||| | || || || ||||||| ||| |||| | | |
Sbjct 114 TTTGTTGCAGAAAGGCCAAACCGTCGTCCTCGTACATGTCAAGCCTCGGGCTTCAT-CTT 172
Query 179 TG--AATAATAGCGCTTCTCTTC-A-TGCTTCCTCTGCAAAGCTGAGCC--------AA- 225
|| | || | | |||| || | | | |||| | ||| |||||| ||
Sbjct 173 TGTCCACAA-A-CCCTTC-AATCAACT-CAAACTCTTCTAAGATGAGCCAAATAAATAAT 228
Query 226 GATTCTTCATTGGTATGCAGAGATCCAGAAGGCAT-TTCCAAAGAAATATTTCTTCCTTT 284
|||||||||||||| || |||| ||||||||| | || ||| | | || ||||||||
Sbjct 229 GATTCTTCATTGGTGTGTGGAGACCCAGAAGGC-TCTTATAAACAGTTGTTCCTTCCTTT 287
Query 285 CCGTTGCT-TCTGCACACGCAAAGACATTCAATGCCAAGATGTGTTGCTT-GAGGAGTCC 342
||||| | |||| |||||||||| || |||||| |||||||||| || ||||||||
Sbjct 288 TCGTTG-TCTCTGTTCACGCAAAGATATACAATGCAAAGATGTGTT-ATTGGAGGAGTCA 345
Query 343 GATGTTGCCAAAGCATTGGTCGAATACGTAAACCAAG-CGGCCATTGAGGTTTTAGTAGT 401
||||| || ||||| || |||||||||| ||| || | | | |||||||| || || ||
Sbjct 346 GATGTGGCGAAAGCTTTAGTCGAATACGCAAATCAGGTC-GTGATTGAGGTATTGGTGGT 404
Query 402 TGGTTCCTCCAGC-AAAGGTGGTTTTCTCAGGTTCAACAAACCTACAGATATTCCAGGCA 460
|||||||| | | |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 405 TGGTTCCT-CTTCAAAAGGTGGCTTTCTCAGGTTCAACAAACCTACAGATATTCCAGGAA 463
Query 461 GCATAACAAAAAACGCTCCTGATTTCTGCACGGTTTATATCATTTCCAAAGGAAAGATT- 519
||| || || | ||| ||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 464 CCATCACCAAGACCGCACCTGATTTCTGCACGGTTTATGTCATAACCAAAGGAAAGCTTT 523
Query 520 CAAACAATGAGATCAGCTTCTCGTTCTGCACC--CATGACTGCTCC-TCTACGCAGTTCA 576
||| ||| || | ||||||||||| |||| || | || | |||| | |||||| | ||
Sbjct 524 CAA-CAAAGAAAACAGCTTCTCGTGCTGCGCCGTC-TGTTT-CTCCAT-TACGCA-TCCA 578
Query 577 G-TTCAACC-ACCTAGCTTAAAGCCTCCTCAACCTATGCCTTCTACTTCCGCTAACAGTC 634
| |||||| || |||||||||||| | || |||| |||||||| | | |||||| |
Sbjct 579 GCTTCAACAGAC-TAGCTTAAAGCCACATCCACCTTTGCCTTCTGCAACTACTAACA--C 635
Query 635 TGCGAGCCGATAGACGGTCTTTTGAGTCTAACCAACGAAGGTC 677
|||| || |||| ||| ||||||||| | || || |||||
Sbjct 636 AA-GAGCTGAGAGACAGTCATTTGAGTCTCAGCATCGCAGGTC 677
> Ahg497409 jgi|Araly1|497409|fgenesh2_kg.365__1__AT5G61550.1
Length=2618
Score = 86.1 bits (46), Expect = 1e-15
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1796 TTCACCGTGATCTCAAACCAGGAAACATCTTGCTAGACCGTAACTTCGTCAGCAA 1850
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1882 TTCACCGTGATCTCAAACCAGGAAACATCTTGCTTGACCACAACTTCGTCAGCAA 1936
> Ahg496318 jgi|Araly1|496318|fgenesh2_kg.8__2134__AT5G61550.1
Length=2432
Score = 86.1 bits (46), Expect = 1e-15
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1796 TTCACCGTGATCTCAAACCAGGAAACATCTTGCTAGACCGTAACTTCGTCAGCAA 1850
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1696 TTCACCGTGATCTCAAACCAGGAAACATCTTGCTTGACCACAACTTCGTCAGCAA 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89169263545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5