BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24390.1
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932479 jgi|Araly1|932479|scaffold_400467.1 784 0.0
> Ahg932479 jgi|Araly1|932479|scaffold_400467.1
Length=499
Score = 784 bits (424), Expect = 0.0
Identities = 471/494 (95%), Gaps = 2/494 (0%)
Strand=Plus/Plus
Query 49 AAGTCAAGAGGAAGAAGATGAGTGGTACAGTGACAATGCACAGTGTCTTCGTCTACGGCA 108
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 4 AAGTCAAGAGGAAGAAGATGAGTGGTACAGTGGCAATGCACAGTGTCTTCGTCTACGGCA 63
Query 109 GTCTCATGGCGGACGACGTCGTTCGTCTCCTCCTCAACCGTATCCCTCAAACCGCTTCCG 168
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 64 GTCTCATGGCGGACGACGTCGTACGTCTCCTCCTCAACCGTATCCCTCAAACCGCTTCCG 123
Query 169 CAACCCTCCCTGATTTCCATAGATTCAGCATCAAAGGTCGTGTTTATCCGGCGATTATAC 228
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 124 CAACCCTCCCTGATTTCCATAGATTCAGCATCAAAGGTCGTGTTTATCCCGCGATTCTAC 183
Query 229 CAGCTAA-GTCTGATAAAGTCTCTGGAAAGGTGTTATTTGGAATCACAGATGATGAACTT 287
||||||| | | |||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 184 CAGCTAAAGCC-GATAAAGTCTCTGGCAAGGTGTTATTTGGAATCACAGATCATGAACTT 242
Query 288 AATGTTTTAGATGAGTTTGAGGATGTTGAGTATGAAAGAGAGAATGTTCAAGTTTTGTTA 347
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 243 AATGTTTTAGATGAGTTTGAAGATATTGAGTATGAAAGAGAGGATGTTCAAGTTTTGTTA 302
Query 348 ACAGATAGTTCAGACGAGAAACTGCAAACAAAAACCTACGTTTGGGCCAAGAAAGATGAT 407
|||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 303 ACAGATAGCTCAGACGAGAAACTGCAAACGAAAACCTATGTTTGGGCTAAGAAAGATGAT 362
Query 408 CCTGACCTATACGGGACATGGGATTTCGAGGAATGGAAGCAACTTCACATGGAAGGTTTC 467
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CCTGACCTTTACGGTACATGGGATTTCGAGGAATGGAAGCAACTTCACATGGAAGGTTTC 422
Query 468 TTGAAGATGACTAAAGAATTTGCTGAAGAGTTGAATTTACCGAAATCCGAGATATGACTC 527
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 423 TTGAAAATGACTAAAGAATTTGCTGAAGAGTTGAATTTACCGAAATCTGAGATATGATTC 482
Query 528 GCCGCTACATTCGG 541
|| || ||||||||
Sbjct 483 GCTGCCACATTCGG 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5