BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24400.1
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481295 jgi|Araly1|481295|fgenesh2_kg.4__355__AT2G24400.1 1088 0.0
Ahg491610 jgi|Araly1|491610|fgenesh2_kg.7__1043__AT4G31320.1 265 4e-70
> Ahg481295 jgi|Araly1|481295|fgenesh2_kg.4__355__AT2G24400.1
Length=729
Score = 1088 bits (589), Expect = 0.0
Identities = 674/714 (94%), Gaps = 10/714 (1%)
Strand=Plus/Plus
Query 4 ACGCTAGACAAAAC--A-TAGTACCAAA--C--TTCTTGTCTTTTGTCTTCTATCTCCAC 56
|||||||||||||| | |||||||||| | |||||||| |||||||||||||||||
Sbjct 1 ACGCTAGACAAAACATAGTAGTACCAAACCCATTTCTTGTC--TTGTCTTCTATCTCCAC 58
Query 57 CATGGAAGCCAAGAAGTCAAACAAGATCAGAGAGATCGTTAAGCTTCAACAGCTTCTCAA 116
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 59 CATGGAAGCCAAGAAGTCAAACAAGATCAGAGAGATCGTGAAGCTTCAACAGCTCCTCAA 118
Query 117 GAAATGGCGAAAACAAGCAATTGCATCAAAAGCAGCCAACAACAACAACGAAGACAACAA 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GAAATGGCGAAAACAAGCAATTGCATCAAAAGCAGCCAACAACAACAACGAAGACAACAA 178
Query 177 TAGCAGTGGCGGGGGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTGTCATTTACAGA 236
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 CAGCAATGGCGGGGGAAGCAAGGGCATCAAGTTTCTGAAGAGGACACTGTCATTTACAGA 238
Query 237 TGTAACAGCTGTGCCTAAAGGGTATCTAGCTGTTTCGGTCGGGTTAGAGAAGAAGAGGTA 296
||||||| ||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 239 TGTAACATCTGTGCCTAAAGGGTATCTAGCTGTCTCTGTTGGGTTAGAGAAGAAGAGGTA 298
Query 297 CACAATACCAACCGAGTACCTCAGCCATCAAGCTTTCTATGTTCTTCTGCGTGAGGCAGA 356
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 CACAATACCAACAGAGTACCTCAGCCACCAAGCTTTCTATGTTCTTCTGCGTGAGGCAGA 358
Query 357 AGAAGAGTTCGGGTTTCAACAAGCCGGTGTCTTGAGGATTCCTTGTGAAGTTTCTGTTTT 416
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 359 AGAAGAGTTCGGGTTTCAACAAACCGGTGTCTTGAGGATTCCGTGTGAAGTTTCTGTTTT 418
Query 417 TGAGAGCATATTGAAGATAATGGAGGAGAAGAACGAAGGGTACCTGGTGACGCCAATAAC 476
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 419 TGAGAGCATATTGAAGATGATGGAGGAGAAGAACGAAGGGTACCTGGTGACGACAACCAC 478
Query 477 AGCTAAGCAGGAATGTAAGTTCAATGCAGCAGCAGATGATAAGACGAGTTACCAGCATCC 536
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 AGCTAAGCAGGAGTGTAAGTTCAATGCAGCAGCAGATGATAAGACGAGTTACCGGCATCC 538
Query 537 ATCAGACTGTCCTAAGACTCCTTCACACCAACCTCACAACAGCCCAATGTGCAGATAGTT 596
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATCGGACTGCCCTAAGACTCCTTCACACCAACCTCACAACAGCCCAATGTGCAGATAGTT 598
Query 597 TTGTTCATTGCTTGCTTCTGCATCTTCTTTTTCCTCCTCTTGTGCTAATTTGAGCCATTC 656
||||||||||||||||| ||||||||||| |||||||||||| || | |||||||||||
Sbjct 599 TTGTTCATTGCTTGCTTTTGCATCTTCTTCTTCCTCCTCTTGAACTGACTTGAGCCATTC 658
Query 657 TGCTTATTCCCACTTTTTCTCTAGGAATATGGATTTGTGTGCTTTAAAATTTCT 710
|||||||||||||||||||||||||||||||||| | ||||||| ||| |||||
Sbjct 659 TGCTTATTCCCACTTTTTCTCTAGGAATATGGATATATGTGCTTCAAA-TTTCT 711
> Ahg491610 jgi|Araly1|491610|fgenesh2_kg.7__1043__AT4G31320.1
Length=570
Score = 265 bits (143), Expect = 4e-70
Identities = 221/258 (86%), Gaps = 8/258 (3%)
Strand=Plus/Plus
Query 190 GGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTGTCATTTACAGATGTAACAGCTGTG 249
||||||||||||||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 181 GGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTATCCTTCACAGACACAACAGCTGTT 240
Query 250 CCTAAAGGGTATCT-AGCTGTTTCGGTCGGGTTAG-AGAAGAAGAGGTACACA-ATACCA 306
|||||||| || || |||||| ||||| ||| || || |||| || |||| | ||||||
Sbjct 241 CCTAAAGGCTA-CTTAGCTGTCTCGGTGGGGA-AGGAGGAGAAAAGATACA-AGATACCA 297
Query 307 ACCGAGTACCTCAGCCATCAAGCTTTCTATGTTCT-TCTGCGTGAGGCAGAAGAAGAGTT 365
|| |||||||| ||||| ||||||||| | || || | ||||||| ||||||||||||||
Sbjct 298 ACAGAGTACCTTAGCCACCAAGCTTTCCACGTGCTGT-TGCGTGAAGCAGAAGAAGAGTT 356
Query 366 CGGGTTTCAACAAGCCGGTGTCTTGAGGATTCCTTGTGAAGTTTCTGTTTTTGAGAGCAT 425
|||||| ||||||| ||| ||||||||||||||||||||||||| || || ||||||||
Sbjct 357 TGGGTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTTCCGTGTTCGAGAGCAT 416
Query 426 ATTGAAGATAATGGAGGA 443
|||||||||||||||||
Sbjct 417 TTTGAAGATAATGGAGGA 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29392769007
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5