BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24420.1
Length=1932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481296 jgi|Araly1|481296|fgenesh2_kg.4__356__AT2G24420.1 2811 0.0
Ahg491608 jgi|Araly1|491608|fgenesh2_kg.7__1041__AT4G31340.2 974 0.0
> Ahg481296 jgi|Araly1|481296|fgenesh2_kg.4__356__AT2G24420.1
Length=1891
Score = 2811 bits (1522), Expect = 0.0
Identities = 1773/1891 (94%), Gaps = 30/1891 (2%)
Strand=Plus/Plus
Query 49 AACG-AAAAATCTTCTTGTTGGCAAATCTCCGGCGAGATCATCTTTC-TTATTTTGTTCC 106
|||| |||||| |||||||||||||||||||||||| |||||| ||| | |||| | |
Sbjct 22 AACGAAAAAAT-TTCTTGTTGGCAAATCTCCGGCGAAATCATC-TTCGCTGTTTTCTAAC 79
Query 107 ACGGAAGTTTCAGACATGGCGGCCGCGAAACTCGTGGCGTT-GTTACTTCTTC-TCGCCT 164
||| || ||||||||||||||||||||||||||||||| || |||||| | || ||||||
Sbjct 80 ACGAAACTTTCAGACATGGCGGCCGCGAAACTCGTGGC-TTGGTTACTAC-TCTTCGCCT 137
Query 165 TGGTTTTCAATTTCACCACTTGTATCTTTGCCGACGCTGGAATCGACGGCGGCGATGAAC 224
||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 138 TGGTTATCAATTTCACCACTTGTATCTTTGCCGACGCTGGAATCAACGGTGGCGAAGAAC 197
Query 225 CGAAACTTAGATCCGACGGCGGTGATATCGAATTGGATCAGCTTAATGCTAAAATCCGTG 284
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 198 CGAAACTTAGATCCGACGGCGGTGAAATCGAATTGGATCAGCTTAATGCTAAAATCCGTG 257
Query 285 CCCTAGAATCTCAGATTGATGATAAAACCAAGGAACTTAAAGGCAGAGAAGAGTTAGTAA 344
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 258 CCCTAGAATCTCAAATTGATGATAAAACTAAGGAACTTAAAGGAAGAGAAGAGTTAGTAA 317
Query 345 CAGAGAAGGAGAAACTTCTTCAAGAGAGACAAGACAAAGTTGCTTCTTTGGAGACTGAGG 404
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CAGAGAAAGACAAACTTCTTCAAGAGAGACAAGACAAAGTTGCTTCTTTGGAGACTGAGG 377
Query 405 TTTCTTCACTAAGGAAAAAAGGTTCATCAGATTCTGTGGAACTGTTGAGTAAAGCTCAAG 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TTTCTTCACTAAGGAAAAAAGGTTCATCAGATTCTGTGGAACTGTTGAGTAAAGCTCAAG 437
Query 465 CACGAGCTACTGAATTAGAGAAGCAGGTTGAGGTACTTAAGAAATTTCTGGAGCAGAAAA 524
|||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 438 CACGAGCTGCTGAATTAGAGAAGCAGGTTGAGGTACTCAAGAACTTTCTGGAGCAAAAAA 497
Query 525 ACAAGGAGAAAGAATTGATAGAAGCTCAGACTAGTGAAACCGAGAAGAAGCTAAACGAAT 584
||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 498 ACAAGGAGAAAGAATCGATAGAAGCTCGGACTAGTGAAGCCGAGAAGAAGCTAAACAAAT 557
Query 585 TGAACTCGAGAGTGGAGAAACTTCACAAGACAAATGAAGAGCAGAAGAACAAAATACGAA 644
||||||||| | | |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 558 TGAACTCGAAACTTGAGAAACTTCACAAGACAAATGAAGAACAGAAGAATAAAATACGAA 617
Query 645 AACTTGAGCGTGCTCTTAAAATTTCTGAGGAAGAAATGTTGCGGACAAAGCATGAAGCCA 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 618 AACTTGAGCGTGCTCTTAAAATTTCTGAGGAAGAAATGTTGCGGACAAAGCATGAAGCAA 677
Query 705 CCACAAAGGCTAAGGAACTGATGGAGGTTCATGGGGCGTGGCTTCCCCCTTGGTTTGCTG 764
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CCACAAAGGCTAAAGAACTGATGGAGGTTCATGGGGCGTGGCTTCCCCCTTGGTTTGCTG 737
Query 765 TACACTGGAGTAGTTTTCAGACTGTTGCTGGGACACACTGGGACGCCCACGGCAAACCAG 824
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TACACTGGAGTAATTTTCAGACTGTTGCTGGGACACACTGGGACGCCCACGGCAAACCAG 797
Query 825 TTATGGAGAAAGTTACTCAAAAGGTGACGTTAGCAAAAAATCAAGCTGAAAAATGGGCTA 884
| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||
Sbjct 798 TAATGGAGAAAGTTACTCAGAAGGTGACGCTAGCGAAAAATCAAGCTGAAAAATGGGCTA 857
Query 885 AACCGCACATGGCTAATGTTAAAACTAAATATATTCCAGCCATAAAAGAGACTGTTAAAA 944
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 858 AACCGCACATGGCTAATGTTAAAACTAAATATATTCCAGCCATGAAAGAGACTGTTAAAA 917
Query 945 CGCATGTTGAGCCACACGTTCAAACACTATCTACCAAAGCGAAAGAGGCTTACCATGCTT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 CGCATGTTGAGCCACACGTTCAAACACTATCTACCAAAGCGAAAGAGGCTTACCATGCTT 977
Query 1005 CCAAGAGTGCGGTTACACCACATATTGTCAAGTTTCAAGAACATGTAGATCCCTATTACC 1064
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 978 CCAAGAGTGCGGTTAGTCCACATATTGTCAAGATTCAAGAACATGTAGATCCCTATTACC 1037
Query 1065 AGGAGGCTAAAAAGTTTAGCAAGCCGTACGTTGATCAAGTGGCCACAGCCACAAAACCAC 1124
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1038 AGGAGGCTAAAAAGTTTAGCAAGCCGTACGTTGATCAAGTAGCCACGGCCACAAAACCAC 1097
Query 1125 ATGTTGATAAGGTGAGAGCTACCATGAAGCCTTACACAACGAAGACTGTCCACTATTACA 1184
||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||
Sbjct 1098 ATGTTGATAAGGTGAGAGCTACCATAAAGCCTTACACAAAGAAGACTATTCACTATTACA 1157
Query 1185 AAGAGTTCCTGGAATCTGCCTCAACTTATCACCACCAGCTTCAAGCCAATGTCGAAA-GT 1243
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct 1158 AAGAGTTCCTAGAATCTGCCTCAACGTATCACCATCAGCTTCAAGCCAATGTCGAAACG- 1216
Query 1244 AAACTGAAGAGCCATGAGCTGTTGGAACCTTTTGCCACCAAAGAGTTCATTTGGTTTGCA 1303
||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 1217 AAATTGAAGAGCCATGAGCTGATGGAACCTTTTGCCACCAAAGAATTCACTTGGTTTGCA 1276
Query 1304 GCCTCTGCTTTGTTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTC 1363
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1277 GCCTCTGCTTTGTTGGCGTTACCTATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTC 1336
Query 1364 TGCACAAAGACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAAGGCCAGA 1423
||||||||||| |||||||||| ||||||| ||| ||| ||||||||||||||||||| |
Sbjct 1337 TGCACAAAGACAAAGAAGCCTACCCGACAGCCTCGTCACCATACTCGCCGTAAGGCCAAA 1396
Query 1424 AGGGGTCATTCTGACAAATGAAGTCACATGCTTTGTGTTGTTATCACTTCCTCGTGCTAT 1483
||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||
Sbjct 1397 AGGGGTCATTCTGACAAGTGAAGTCACATGATT-GTGTTGTTGTCACTTCCTCGTGCTAT 1455
Query 1484 AAATATTAGAGGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTAT 1543
|||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||
Sbjct 1456 AAATATTAGAGGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTTAGCAACACTCTAT 1515
Query 1544 ATGTTTCCTTCGTTGCGTATGAAAGAAACAGCTTATGTT-AGAGGTATCTTATGGGtttt 1602
|||||||||||||| ||||||||||||| |||||||||| ||||||||||| ||||| ||
Sbjct 1516 ATGTTTCCTTCGTTACGTATGAAAGAAATAGCTTATGTTGAGAGGTATCTTTTGGGTCTT 1575
Query 1603 tttttAATCTCGCTGTGCAAAAGTGTTCTTCACTCTCTCTGTTTTTGAGATGCCTTTTGA 1662
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1576 CTTTTAATCTCGCTGTGCAAAAGTGTTCTTCACTCTCTCCGTTTTTGAGATGCCTTTTGA 1635
Query 1663 ATATAAAGTTTTCAGTCTTTTATACAGAGAAGATTGACATCTAGAGGAAATCTACTAAGG 1722
||||||||||||||||||||| ||||||||||||| | |||||| | | | ||
Sbjct 1636 ATATAAAGTTTTCAGTCTTTT-TACAGAGAAGATTAA-ATCTAG------T--A--A-GG 1682
Query 1723 GCTTGGTTTGTGTATTTTGTGATTCATGTGGATAAATTTGGTACTTG-TGCCATTACTCT 1781
||||| |||||||||||||||||||||||||||| || ||||||||| | | ||||||||
Sbjct 1683 GCTTGTTTTGTGTATTTTGTGATTCATGTGGATAGATATGGTACTTGCTTC-ATTACTCT 1741
Query 1782 TTAAAAGCA--ATCACTCTTTGTCTTTTATCTTTTTGAAAACTTTTTCTCAAAAATCGAA 1839
|||||| | |||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1742 TTAAAAAAACTATCACT-TTTGTCTTTTGTCTTTTTGAAAACTATTTCTCAAAAATCGAA 1800
Query 1840 ACCAAATTGGGAATTGTTACAGCTTTTATTTTATTTGTAACTAAAAATCATAGAGCCAGA 1899
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 ATCAAATTGGGAATTGTTACAGCTTTTATTTTATTTGTAACTAAAAATCATAGAGCCAGA 1860
Query 1900 CCATAATTGGTTTGACTAGTCTTTGATTCTT 1930
||||||||||||||||||||||| |||||||
Sbjct 1861 CCATAATTGGTTTGACTAGTCTTCGATTCTT 1891
> Ahg491608 jgi|Araly1|491608|fgenesh2_kg.7__1041__AT4G31340.2
Length=1832
Score = 974 bits (527), Expect = 0.0
Identities = 994/1217 (82%), Gaps = 42/1217 (3%)
Strand=Plus/Plus
Query 251 ATCGAATTGGATCAGCTTAATGCTAAAATCCGTGCCCTAGAATCTCAGATTGATGATAAA 310
||| || |||||||||||| ||| || ||||||||||||||||| || || ||||| |||
Sbjct 267 ATCCAACTGGATCAGCTTACTGCCAAGATCCGTGCCCTAGAATCCCAAATCGATGAGAAA 326
Query 311 ACCAAGGAACTTAAAGGCAGAGAAGAGTTAGTAACAGAGAAGGAGAAACTTCTTC-AAG- 368
||| |||| || | |||| ||| ||||||||| |||||||||||||||||| || |||
Sbjct 327 ACCCGGGAAGTTCAGGGCAAAGACGAGTTAGTAGCAGAGAAGGAGAAACTTC-TCAAAGA 385
Query 369 AGAGACAAGACAAAG-TTGCTTCTTTGGAGACTGAGGTTTCTTCACTAAGGAAAAAA-GG 426
| || ||||| ||| || |||| ||| ||||||| || || ||||| | |||||| ||
Sbjct 386 AAAG-GAAGAC-AAGATTTCTTCCTTGCAGACTGAAGTCTCATCACT-ACAAAAAAAGGG 442
Query 427 TTCATCAGATTCTGTGGAACTGTTGAGTAAA-GCTCAAGCACGAGCTACTGAATTAGAGA 485
||||||||||||| ||| |||| | ||| |||||||| |||||| ||||||| ||||
Sbjct 443 ATCATCAGATTCTGCAAAACAGTTG-GGAAAGGCTCAAGCGCGAGCTGCTGAATTGGAGA 501
Query 486 AGCAGGTTGAGGTACTTAAGAAATTTC-TGGAGCAGAAAAACAAGGAGAAAGAATT-GA- 542
||||||| |||||||| || ||| ||| ||||||| |||||||||||||||| ||| |
Sbjct 502 AGCAGGTAGAGGTACTCAA-AAACTTCTTGGAGCAAAAAAACAAGGAGAAAG-ATTCCAC 559
Query 543 TAGAAGCTCAGACTAGTGAAACCGAGAAGAAGCTAAACGAATTGAACTCGAGAGTGGAGA 602
| ||||||| ||||| |||| | ||||| || ||||| ||| | ||||| || | || |
Sbjct 560 T-GAAGCTCGGACTAATGAAGCTGAGAAAAAACTAAATGAACTAAACTCAAGCCTTGACA 618
Query 603 AACTTCACAAGACAAATGAAGAGCAGAAGAACAAAATACGAAAACTTGAGCGTGCTCTTA 662
||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 619 AACTTCAGAAGACAAATGAAGAGCAGAAGAACAAAATAGGAAAACTTGAACGTGCTATTA 678
Query 663 AAATTTCTGAGGAAGAAATGTTGCGGACAAAGCATGAAGCCACCACAAAGGCTAAGGAAC 722
| || ||||||||||||||||| ||||||||| ||| || |||||||||||||||||||
Sbjct 679 AGATAGCTGAGGAAGAAATGTTGAGGACAAAGCTTGAGGCAACCACAAAGGCTAAGGAAC 738
Query 723 TGATGGAGGTTCATGGGGCGTGGCTTCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTC 782
|| |||||| |||||| ||||||||||||||||| ||||||| |||||| || ||||
Sbjct 739 TGCTGGAGGCTCATGGTTCGTGGCTTCCCCCTTGGCTTGCTGTTCACTGGTTTAAATTTC 798
Query 783 AGACTGT-TGCTGGGACACACTGGGACGCCCACGGCAAACCAGTTATGGAGAAAGTTACT 841
||||| | | ||| |||||| ||||| ||||| || ||||| | | |||||| ||| | |
Sbjct 799 AGACT-TATACTGAGACACATTGGGAGGCCCATGGGAAACCTGCTGTGGAGACAGTAATT 857
Query 842 CAAAAGGTGACGTTAGCAAAAAATCAAGCTGAAAAATGGGCTAAACCGCACATG--GCTA 899
| |||||||||| ||||||| |||||||||||| |||||| |||| ||||| | |
Sbjct 858 CTAAAGGTGACGGAAGCAAAAGCTCAAGCTGAAAAGTGGGCTGAACC--ACATGTTGAAA 915
Query 900 ATGTTAAAACTAAATATATTCCAGCCATAAAAGAGACTGTTAAAACGCATGTTGAGCCAC 959
| |||||||||||||||||||||||||| || || || |||| || |||||||||||||
Sbjct 916 ACGTTAAAACTAAATATATTCCAGCCATCAAGGAAACCGTTACTACACATGTTGAGCCAC 975
Query 960 ACGTTCAAACACTATCTACCAAAGCGAAAGAGGCTTACCATGCTTCCAAGAGTGCGGTTA 1019
|||| | ||||||||| | |||||| ||||||||||||||||| || |||||||| |||
Sbjct 976 ACGTCCGAACACTATCCATCAAAGCTAAAGAGGCTTACCATGCATCAAAGAGTGCTGTTT 1035
Query 1020 CACCACATATTGTCAAGTTTCAAGAACATGTAGATCCCTATTACCAGGAGGCTAAAAAGT 1079
| || || ||||||| | |||||||| |||||| |||||||| |||||||| |||||||
Sbjct 1036 CCCCTCACATTGTCACGGTTCAAGAATTTGTAGACCCCTATTATCAGGAGGCCAAAAAGT 1095
Query 1080 TTAGCAAGCCGTACGTTGATCAAGTGGCCAC-AGCCACAAAACCACATGTTGATAAGGTG 1138
| |||||||| || || || ||||||||||| | |||| ||||||||||||||||| ||
Sbjct 1096 TCAGCAAGCCATATGTCGACCAAGTGGCCACGA-CCACGAAACCACATGTTGATAAAATG 1154
Query 1139 AGAGCTA-CCATGAAGCCTTACACAACGAAGACTG-TC--CA-CTATTACAAAGAGTTCC 1193
| || | ||||||| ||||||||||| ||| || || | |||| ||| |||||||
Sbjct 1155 A-AGGTTGCCATGAAACCTTACACAACCAAGG-TGATCATCGTCTAT-ACA--GAGTTCC 1209
Query 1194 TGGAATCTGCCTCAACTTATCACCACCAGCTTCAAGCCAATGTCGAAAGTAAACTGAA-G 1252
| ||||| ||| ||||||||||||| ||| | |||||| || ||||| | |||||||| |
Sbjct 1210 TTGAATCCGCCACAACTTATCACCATCAGGTCCAAGCCCATATCGAACGAAAACTGAAAG 1269
Query 1253 AGCCATGAGCTGTTGGAACCTTTTGCCACCAAAGAGTTCATTTGGTTTGCAGCCTCTGCT 1312
| |||||||||| ||| |||||||| ||||| ||||| |||||||||| ||||||||
Sbjct 1270 A-CCATGAGCTGACGGAGCCTTTTGCTACCAATGAGTTTGTTTGGTTTGCGGCCTCTGCA 1328
Query 1313 TTGTTGGCCTTACCCATCTTCATAG-TGTACAAATTCCTCTGTTCGCTCTTCTG-CA-CA 1369
||||||| || ||||||||| | | | |||||| | |||||||| |||||||| || ||
Sbjct 1329 TTGTTGGTATTTCCCATCTTCGTTGCT-TACAAAGTGCTCTGTTCTCTCTTCTGGCAACA 1387
Query 1370 -AA-GACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAAGGCCAGAAGGG 1427
|| ||| ||||| ||| | ||| ||||||| ||| ||| |||||||||| |||||
Sbjct 1388 CAAAGACAAAGAAACCTGTTAAACACCCTCATCACCATGGTCGTCGTAAGGCCAAAAGGG 1447
Query 1428 GTCATTCTGACAAATGA 1444
|||| ||||||| |||
Sbjct 1448 GTCACACTGACAAGTGA 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72600006970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5