BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24430.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344010 jgi|Araly1|344010|fgenesh1_pg.C_scaffold_4000352 1487 0.0
> Ahg344010 jgi|Araly1|344010|fgenesh1_pg.C_scaffold_4000352
Length=960
Score = 1487 bits (805), Expect = 0.0
Identities = 911/961 (95%), Gaps = 11/961 (1%)
Strand=Plus/Plus
Query 75 ATGGAACAAGGAGATCATCAGCAGCATAAGAAAGAAGAAGAAGCTTTGCCACCGGGTTTC 134
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAACAAGGAGATCATCAACAGCAGAAGAAAGAAGAAGAAGCTTTGCCGCCGGGTTTC 60
Query 135 AGATTTCATCCGACGGATGAGGAGCTAATCTCATATTACTTGGTTAATAAGATTGCCGAT 194
||||||||||| || |||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 61 AGATTTCATCCAACTGATGAGGAGCTAATCTCATACTACTTGATTAATAAGATCGCCGAT 120
Query 195 CAAAACTTCACCGGGAAAGCAATCGCTGACGTTGATCTTAACAAGTCCGAGCCATGGGAG 254
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 121 CAAAACTTCACCGGAAAAGCAATCGCCGACGTTGATCTCAACAAGTCCGAGCCATGGGAG 180
Query 255 CTTCCTGAGAAGGCGAAAATGGGAGGAAAAGAATGGTACTTTTTTAGCCTCCGGGACCGG 314
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTTCCTGAGAAGGCGAAAATGGGCGGAAAAGAATGGTACTTTTTTAGCCTCCGAGACCGG 240
Query 315 AAGTACCCGACGGGAGTGAGGACGAATAGGGCGACGAATACAGGATATTGGAAAACCACA 374
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 AAGTACCCGACGGGAGTGAGGACGAATAGAGCAACGAATACAGGATATTGGAAAACCACG 300
Query 375 GGAAAAGACAAAGAGATATTCAATAGCACAACCTCGGAGTTGGTCGGGATGAAGAAGACT 434
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGGAAAGACAAAGAGATATTCAATAGCACAACCTCGGAGTTGGTCGGGATGAAGAAGACT 360
Query 435 TTGGTCTTTTACAGAGGACGAGCTCCTCGTGGGGAGAAGACTTGTTGGGTCATGCATGAG 494
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 TTGGTCTTTTATAGAGGACGAGCTCCTCGTGGGGAGAAGACTAGTTGGGTCATGCATGAG 420
Query 495 TATCGACTTCACTCCAAGTCCTCATATAGAACCTCCAAGCAAGACGAGTGGGTAGTGTGT 554
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATCGACTTCACTCTAAGTCCTCATATAGAACCTCCAAGCAAGACGAGTGGGTAGTGTGT 480
Query 555 AGAGTGTTCAAGAAAACAGAAGCAACCAAGAAATACATAAGCACCAGTAGCAGCAGCACA 614
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 AGAGTGTTCAAGAAAACAGAAGCAACCAAGAAATACATAAGCAGCAGTAGCAGCAGCACA 540
Query 615 AGTCATCA---CCACAACAAC---CACACAAGAGCCTCAATACT---ATCAACCAACAAC 665
|||||||| ||| ||| || |||||||||||||||||||| |||||||||||||
Sbjct 541 AGTCATCATAACCATAACCACAATCACACAAGAGCCTCAATACTCTCATCAACCAACAAC 600
Query 666 AATAATC-CTAATTACTCATCAGACCTCCTTCAACTCCCACCGCATCTACAACCACACCC 724
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACAA-CACTAATTACTCATCAGACCTCCTTCAACTCCCACCGCATCTACAACCACACCC 659
Query 725 GAGCCTCAATATTAACCAATCCCTCATGGCAAACGCCGTTCACCTAGCTGAGCTCTCAAG 784
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 660 GAGCCTCAATATCAACCAATCCCTCATGGCTAACGCCGTTCACCTAGCCGAGCTCTCTAG 719
Query 785 AGTCTTCCGTGCCTCTACAAGCACCACCATGGACTCTTCTCATCAGCAGCTAATGAACTA 844
||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 720 AGTCTTCCGTGCCTCCACAAGCACCAACATGGACTCTGCTCATCAGCAGCTAATGAACTA 779
Query 845 CACCCACATGCCTGTCTCAGGGCTCAACCTCAACCTTGGCGGTGCACTGGTCCAGCCGCC 904
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 780 CACCCACATGCCTGTCTCAGGGCTCAGTCTAAACCTTGGCGGTGCACTGGTCCAGCCGCC 839
Query 905 TCCTGTTGTGTCTCTTGAGGATGTTGCCGCGGTTAGTGCTTCGTACAATGGCGAAAACGG 964
|||||||||||| || |||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 840 TCCTGTTGTGTCACTCGAGGATGTTGCCGCGGTTAGTGCTTCGTTCAATGGGGGAAACGG 899
Query 965 GTTTGGAAATGTGGAGATGAGCCAGTGCATGGACTTGGATGGATACTGGCCATCTTATTG 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTTTGGAAATGTGGAGATGAGCCAGTGCATGGACTTGGATGGATACTGGCCATCTTATTG 959
Query 1025 A 1025
|
Sbjct 960 A 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5