BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24440.1
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481300 jgi|Araly1|481300|fgenesh2_kg.4__360__AT2G24440.1 1142 0.0
Ahg481301 jgi|Araly1|481301|fgenesh2_kg.4__361__AT2G24450.1 65.8 6e-10
> Ahg481300 jgi|Araly1|481300|fgenesh2_kg.4__360__AT2G24440.1
Length=923
Score = 1142 bits (618), Expect = 0.0
Identities = 812/899 (90%), Gaps = 39/899 (4%)
Strand=Plus/Plus
Query 57 GGAGAAGGAAAAGGGAAAGCTATAGCGAATA---CG--AGGA-TGCTTCGAAGCATGGAT 110
||| ||||||||||||||||||||||||||| || | || |||||||||| |||| |
Sbjct 31 GGAAAAGGAAAAGGGAAAGCTATAGCGAATACGTCGACAAGAGTGCTTCGAAGTATGGGT 90
Query 111 CGAAAGACTCGAAGCGATACTAAGCGAGATGGTTCTTCTTCTAAGCTCATGAAGATCGAA 170
|| |||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||
Sbjct 91 CGGAAGACTCGAAGCGATACTCAGCGAGAAGGTTCTTCTTCTAAGCTTGTGAAGCTCGAA 150
Query 171 TCTCCGGagaagaagaaacggaagacgacgaaagcgaagaatgttggagctgcgaagaag 230
||||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||||
Sbjct 151 TCTCCAGAGAAGAAGAAACGAAAGACGACGAAAGCGAAGAATGGTGGAGCAGCGAAGAAG 210
Query 231 aaggtaaagaaagaagaggtagctgtgaaaatc------ga-ga--aag-a-----ggag 275
||||| ||||||||||||||||||||||||||| || || ||| | ||||
Sbjct 211 AAGGTCAAGAAAGAAGAGGTAGCTGTGAAAATCGAGAAAGAGGATGAAGAATCTGCGGAG 270
Query 276 gaggaagaTGATGATGCTGC------AG-AG-A-AAGAAG-A-A-GATGACGACTCCGAT 323
|||||||||| ||||||||| || || | |||||| | | ||||||||||||||
Sbjct 271 GAGGAAGATGGTGATGCTGCAGAGAAAGAAGAAGAAGAAGAAGATGATGACGACTCCGAG 330
Query 324 AAGAAGAAGATTGTGATCGAGCATTGCAAACAATGCAAATCATTCAAGGAGAGGGCTAAT 383
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 331 AAGAAGAAGATTGTGATCGAGCACTGCAAACAATGCAAATCATTCAGGGAGAGGGCTAAT 390
Query 384 GAGGTGAAGGAAGGTCTAGAGGAAGCTGTTCCTGGCATCATTGTCACTGTGAATCCTGAT 443
||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 391 GAGGTGAAGGAAGGTCTAGAGGAAGCTGTCCCTGGCATTGTTGTGACTGTGAATCCTGAT 450
Query 444 AAGCCAAGGCGTGGTTGCTTTGAGATTCGAGAGGAAGGCGGCGAGACATTCATCAGTCTT 503
||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||
Sbjct 451 AAGCCAAGGCGTGGTTGTTTTGAGATTCGAGAGGAAGGTGGTGAAACATTCATCAGTCTT 510
Query 504 TTGGCTATGAAGCGCCCATTTACACCGATGAAGGAACTTAACATGGAAGAGGTCATTGCG 563
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 511 TTGGCTATGAAGCGCCCATTTACACCAATGAAGGAACTTAACATGGAAGAGGTCATTACT 570
Query 564 GACATCGTAGAGAAGATTAAGTAACACAGCTAGTAGGTTCTACCAATGCCGAGTCTTTCG 623
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| |
Sbjct 571 GACATCGTAGAGAAGATTAAATAACATTGCAAGTAGGTTCTACCAATGCCGAGTCTTTTG 630
Query 624 TTTCCTCCTTGGCCCTCGGCTAATAGGCTTCAATATCTGACTATCTAGAGCAACTGCAGG 683
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 631 TTTCTTCCTTGACCCTCGGCAAATAGGCTTCAATATCTGACTATCTAGAGCAACTGCAGG 690
Query 684 ATTTTTTAGGCTTAATTTTGATATATTGGTGAAAACCATTTGAGCACGGTTTCGTCGTTT 743
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 691 ATTTTTTAGTCTTAATTTTGATATATTGGTGAAAACCATTTAAGCACGGTTTCGTCATTT 750
Query 744 GGTAGTGCTTGATCGGCTTTGTGCAGTTTCTTTATGCTAAAACTTCCTGATATATATGGG 803
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 751 GGCAGTGCTTGATCGGCTTTGTGCAGTTTCTTTATGCTAAAACTTCCTGATATATTTGGG 810
Query 804 ATTAAGTCTGTCTTCGTAATGCTAGTTTGAAGCAATTCGTTTCGTTTCATTTATTGTTGG 863
||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 811 ATTAAGTCTGTCTTCGTAATGCTAGTTTGAAGCAATTCGTTTCA---C-TTG-TTGTTGG 865
Query 864 ATTGTGTTTGGCGTTCAATTACGTTACGGATTGGATGAATGAAGATAAAACATTTAGTT 922
|||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 866 ATTGCGTTTGGCGTT-AATTATGTTATGGATTGGATGAATGAAGATAAAACATTTAGTT 923
> Ahg481301 jgi|Araly1|481301|fgenesh2_kg.4__361__AT2G24450.1
Length=1185
Score = 65.8 bits (35), Expect = 6e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 886 GTTACGGATTGGATGAATGAAGATAAAACATTTAGTTA 923
|||| |||||||||||||||||||||||||||||||||
Sbjct 1185 GTTATGGATTGGATGAATGAAGATAAAACATTTAGTTA 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5