BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24450.1
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481301 jgi|Araly1|481301|fgenesh2_kg.4__361__AT2G24450.1 1873 0.0
Ahg481300 jgi|Araly1|481300|fgenesh2_kg.4__360__AT2G24440.1 65.8 7e-10
> Ahg481301 jgi|Araly1|481301|fgenesh2_kg.4__361__AT2G24450.1
Length=1185
Score = 1873 bits (1014), Expect = 0.0
Identities = 1135/1192 (95%), Gaps = 13/1192 (1%)
Strand=Plus/Plus
Query 1 GCTCCTCTTAAGGTCTGTATATATACCCAACCTGATCCTCTTATTGCAAACTCAGGCTTT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTGCTCTTAAGGTCTGTATATATACCCAACCTGATCCTCTTATTGCAAACTCAGGCTTT 60
Query 61 GAGGTTTGAGCTTTTACTATAG-AATAATAAGGGTAATAAACAAAGACACCCAAAGATGG 119
|||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 61 GAGGTTTGAGCTTTTACTATAGAAAAAATAAGGGTAATAAACAAAAACACCCAAAGATGG 120
Query 120 GTCTCAAGGTCTCCTCTTCTCTCCTCTGTCTCACCATCTTACTCGCTGTTTCATCCATTG 179
||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||
Sbjct 121 GTCTCAAGGTCTCCTCTTCTCTCGTCTGTCTCACCATCTTACTTGGTGTTTCCTCCATTG 180
Query 180 TATCAGCGGTTAACATAACCCGAGTGCTCGAGAAATACCCTGAATTCAGCACCATGACCG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATCAGCGGTTAACATAACCCGAGTGCTCGAGAAATACCCTGAATTCAGCACCATGACCG 240
Query 240 AGCTTCTTGCCAAGACCGAGCTCACACCAATTATCAACAAACGTCAGACCATCACCGTGC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCTTCTTGCCAAGACCGAGCTCACACCAATTATCAACAAACGTCAGACCATCACCGTGC 300
Query 300 TGGCCCTTAACAACGATGCTATCGGTTCCATCTCTGGTAGACCCGAGGAAGAGGTCAAGA 359
|||| |||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 TGGCTCTTAGCAATGATGCCATCGGTTCCATCTCTGGTAGACCCGAGGAAGAGCTCAAGA 360
Query 360 ACATTCTTATGAACCATGTGGTTCTTGACTACTTTGATGAGCTTAAGCTCAAGGCTCTCA 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACATTCTTATGAACCATGTGATTCTTGACTACTTTGATGAGCTTAAGCTCAAGGCTCTCA 420
Query 420 AGGAAAAGAGCACATTGCTCACTACCCTTTACCAGTCCACCGGTTTGGGCCAACAGCAAA 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGAAAGGAGCACATTGCTCACTACCCTTTACCAGTCCACCGGTTTGGGCCAACAGCAAA 480
Query 480 ACGGTTTCCTCAACTGCACCAAATCTAACGGAAAGATTTACTTTGGTTCTGGTGTGAAAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGGTTTCCTCAACTGCACCAAATCTAACGGAAAGATTTACTTTGGTTCTGGTGTGAAAG 540
Query 540 GCGCTCCTCAAACCGCTGAATACATCACAACCGTTTTCCGTAACCCGTACAATCTCTCTG 599
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 GCGCTCCTCAAACCGCTGAATACATCACAACTGTTTTCCGTAACCCGTACAATCTCTCTG 600
Query 600 TGGTCCAGATCAGCATGCCCATTGTGGCACCTGGACTCGGGTCTCCGGTTAAGGTTCCTC 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 TGGTCCAGATCAGCATGCCCATTGTGGCTCCTGGACTCGGGTCTCCGGTTAAGGTTCCTC 660
Query 660 CACCACCACCCATGTCTTCACCACCGGCCCCATCTCCCAAGAAGGGTGCAGCCACTCCAG 719
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 CACCACCACCCATGTCTTCACCACCAGCCCCATCTCCCAAGAAGGGTGCAGCCACTCCAG 720
Query 720 CTCCAGCTCCTGCTGATGAAGGGGATTATGCAGATGCTCCTCCTGGTTTAGCTCCAGAAA 779
|||| | || ||||| |||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 721 CTCCTGGACCAGCTGAGGAAGAGGATTATGCAGATGCTCCTCCTGGTGCAGCCCCAGAAA 780
Query 780 CCGCACCTGCATCTGCACCATCAGAAAGTGATTCTCCAGCTCCAGCTCCAGAT-AAGTCT 838
| |||||||||||||| |||||||| ||||||||||||||| |||||||| || |||
Sbjct 781 CTGCACCTGCATCTGCTCCATCAGA---TGATTCTCCAGCTCCGGCTCCAGAGCAA-TCT 836
Query 839 GGCAAGAAGAAGATGGCAGCAGCTGATGAGGCTGAACCACCTTCTTCTGCTTCTAACACC 898
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 837 GGCAAGAAGAAGATGGCTGCAGCTGATGAGGCTGAACCACCTTCTTCTGCTTCTAACGCC 896
Query 899 GGTTTGAGCTTCGGTGCTGTCCTTGTTCTCGGGTTTGTGGCTAGCTTTGTTGGGTTCTAA 958
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 GGTTTGAGCTTCGGTGCTGTCCTCGTTCTCGGGTTTGTGGCTAGCTTTGTTGGGTTCTAA 956
Query 959 GATGATTTAAGA-CAG--CGAGTCGAGGATAA-ATTAAACTGATAATGAGACTCGAACAT 1014
|||| ||||| | ||| ||||| |||||||| || |||||||||||||||||||| |||
Sbjct 957 GATGGTTTAA-ATCAGAGCGAGTTGAGGATAAGAT-AAACTGATAATGAGACTCGACCAT 1014
Query 1015 AGACAGAGGCAATGGTGATACGAAGTGGATCAAAGACACTAACAATTTCTACTCACATTA 1074
|| |||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 1015 AGTCAGAGGCA-TGGTGATATGAAGTGGATCAAAAAGACTAACAATTTCTACTCACATTA 1073
Query 1075 TTGTACCTCAATCATTTATCATTAGACAATGAAAGTGTGATGTTCTGTCCTGTGAAGCTT 1134
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1074 TTGTACCTCAATCATTTATCATTAGGCAATGAAAGTGTGATGTTCTGTCCTGTGAAACTT 1133
Query 1135 GTATTACCACATTGTAACTAAATGTTTTATCTTCATTCATCCAATCCGTAAC 1186
||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1134 GTATTACCAAATTGTAACTAAATGTTTTATCTTCATTCATCCAATCCATAAC 1185
> Ahg481300 jgi|Araly1|481300|fgenesh2_kg.4__360__AT2G24440.1
Length=923
Score = 65.8 bits (35), Expect = 7e-10
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Minus
Query 1150 AACTAAATGTTTTATCTTCATTCATCCAATCCGTAACGTAA 1190
|||||||||||||||||||||||||||||||| |||| |||
Sbjct 923 AACTAAATGTTTTATCTTCATTCATCCAATCCATAACATAA 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44413198305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5