BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G24460.1

Length=1062
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932496 jgi|Araly1|932496|scaffold_400484.1                        154    1e-36


> Ahg932496 jgi|Araly1|932496|scaffold_400484.1
Length=227

 Score =  154 bits (83),  Expect = 1e-36
 Identities = 163/197 (83%), Gaps = 24/197 (12%)
 Strand=Plus/Plus

Query  159  TGTCTAATTTCACTACGATCGACG-ATGGAAACTGAATCAATCAAACTCGATGTTCAAGT  217
            |||||||||||||| |   ||| | ||||||||||| |||| ||||||||||||||||||
Sbjct  1    TGTCTAATTTCACT-C---CGA-GTATGGAAACTGACTCAACCAAACTCGATGTTCAAGT  55

Query  218  --A---A-CGACTACGTCTCAAGATCCGTCGTTAGGGTTGTTAAGCACGGTAATAATCAC  271
              |   | || |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  56   AGATGTAGCGGCTACGTCTCAAGATCCGTCGTTAGGGTTCTTAAGCACGGTAATAATCAC  115

Query  272  TCTTGACAGAGATCTGGAGGAATATGACGAGAATGTTGATAGCATCAAGAGCCTCGGATC  331
            ||| ||||||||  |  |    | ||| | || ||   ||||||||||||| || |||||
Sbjct  116  TCTAGACAGAGAG-T--AC---T-TGAAG-GA-TG---ATAGCATCAAGAGTCTAGGATC  163

Query  332  TTACCCTGATTCTTCTA  348
            |||||||||||||||||
Sbjct  164  TTACCCTGATTCTTCTA  180



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39533464929


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5