BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24490.1
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932499 jgi|Araly1|932499|scaffold_400487.1 1397 0.0
> Ahg932499 jgi|Araly1|932499|scaffold_400487.1
Length=885
Score = 1397 bits (756), Expect = 0.0
Identities = 841/883 (95%), Gaps = 2/883 (0%)
Strand=Plus/Plus
Query 56 ATTTCGTAGCTTCGAAAATGTTCTCCAGCAGCCAATTCGAGCCTAATTCCGGCTTCTCCG 115
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4 ATTTCCAAGCTTCGAAAATGTTCTCCAGCAGCCAATTCGAGCCTAATTCCGCCTTCTCCG 63
Query 116 GCGGCGGATTCATGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTA 175
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 64 GCGGCGGATTCATGTCTTCTCAACCTTCTCAGGCCTACGAATCCTCTTCCTCCACCGCTA 123
Query 176 AGAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAATGTTTCC 235
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 124 AGAATCGTGAGTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAATGTTTTC 183
Query 236 AATCCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACGTTTCAC 295
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 184 AGTCCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACGTCTCAC 243
Query 296 TTGTTGGAT-TAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTT 354
||||||| | |||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 244 TTGTTGG-TCTAGTGTGTGATAAAGATGTTTCTAAAGTCACAGAAGTTAGATTCACTCTT 302
Query 355 GATGATGGAACAGGACGAATTGACTGTAAAAGATGGGTGAGTGAAACTTTCGACGCTAGA 414
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 303 GATGATGGAACAGGACGAATTGACTGTAAAAGATGGGTGAATGAAACTTTCGACGCTAGA 362
Query 415 GAAATGGAGTCTGTGCGAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTT 474
||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 363 GAAATGGAGTCGGTGCGAGATGGAACTTATGTGCGTGTCAATGGTCATTTGAAGACTTTT 422
Query 475 CAGGGCAAAACTCAGCTTCTTGTTTTCTCTGTGAGGCCTATTATGGACTTCAATGAGGTT 534
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CAGGGGAAAACGCAGCTTCTTGTTTTCTCTGTGAGGCCTATTATGGACTTCAATGAGGTT 482
Query 535 ACTTTTCACTACATTGAGTGTATACACTTCTACTCCCAGAACTCTGAATCACAGAGACAA 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 483 ACTTTTCACTACATTGAGTGTATACACTTCTACTCCCAGAACTCTGAATCACAGGGACAA 542
Query 595 CAAGTCGGTGATGTCACTCAGTCAGTTAACACCACATTTCAAGGTGGATCAAACACAAAC 654
||||| |||||||||| ||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 543 CAAGTTGGTGATGTCAATCAATCGGTTAACACCACGTTTCAAGGTGGATCAAACACAAAC 602
Query 655 CAGGCAACACTATTGAACCCTGTGGTTTCTTCTCAAAACAATGATGGCAATGGGCGCAAG 714
|||||||||| |||||||||||| || || |||||||||||||| || ||||||||||||
Sbjct 603 CAGGCAACACCATTGAACCCTGTTGTGTCCTCTCAAAACAATGACGGAAATGGGCGCAAG 662
Query 715 AACTTGGATGATATGATTCTAGACTATCTAAAGCAACCTGCTTGCACTGCAAGACAACAG 774
||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 663 AACTTAGATGACATGATTCTAGACTATCTAAAGCAACCTGCTTGCACTGAAAGACAACAG 722
Query 775 GGGATACATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGAGGGC 834
|||||||| || ||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 723 GGGATACACATTGATGAAATTGCTCAGCAATTGAAGGTCCCAAAGAACAAGCTAGAGGGC 782
Query 835 GTTGTTCAATCACTGGAAGGAGATGGTCTAATATACTCGACAATCGATGAGTATCACTTC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GTTGTTCAATCACTGGAAGGAGATGGTCTAATATACTCGACAATCGATGAGTATCACTTC 842
Query 895 AAGCACGTGGAGCTTTGATCTATCTAATAGTCATCTAGAGTTT 937
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct 843 AAGCACGTCGAGCTTTGATCTATCTAATAGTCATCTAGAGTTT 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43231387878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5