BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24500.1
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481305 jgi|Araly1|481305|fgenesh2_kg.4__365__AT2G24500.1 2030 0.0
Ahg328581 jgi|Araly1|328581|fgenesh1_pm.C_scaffold_7000808 233 2e-60
> Ahg481305 jgi|Araly1|481305|fgenesh2_kg.4__365__AT2G24500.1
Length=1455
Score = 2030 bits (1099), Expect = 0.0
Identities = 1313/1410 (93%), Gaps = 40/1410 (3%)
Strand=Plus/Plus
Query 1 AGATTTGGAGATTTGTCGTTAAACAAATTTCGCCGACCTACGTATGAGCCGTCGCCTCCA 60
|||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 1 AGATTTGGAGATTTGTCGTT-AACAAATTTTGCCGACCTAC----GAGCCGTCGCCTCC- 54
Query 61 ATATAAACCAAAGCCATCCCTAATCCTCGAATTCTTCCTCTCTGAG---TT-TT--TATT 114
||| ||||||||||||| ||||||| |||| ||||||||| || || | ||
Sbjct 55 -TAT------AAGCCATCCCTAAACCTCGAACTCTTTCTCTCTGAGTTCTTCTTCGTTTT 107
Query 115 CTGAGATAGAGAAAGATGTCAGGTTTAGCTTGTAATTCGTGTAACAAAGACTTCGAAGAC 174
|| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 108 CTCAGATAGAGAGAGATGTCAGCTTTAGCTTGTAATTCGTGTAACAAAGAGTTCGAAGAC 167
Query 175 GACGCTGAGCAGAAGTTTCACTACAAATCCGAATGGCACCGTTACAATCTCAAGCGCAAG 234
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 168 GACGCTGAGCAAAAGTTTCACTACAAATCCGAGTGGCACCGTTACAATCTCAAGCGCAAG 227
Query 235 ATAGCTGGTGTTCCTGGAGTAACAGAGGCACTATTTGAAGCTAGACAAGCTGCTATAGCT 294
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 228 ATAGCTGGTGTTCCTGGAGTAACAGAGGCATTATTTGAAGCTAGACAAGCTGCTATAGCT 287
Query 295 CAAGAGAAGGTTAAAGCTGTTGAAGCACCGATGCTTTATAGTTGTGGAATCTGTAACAAA 354
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 288 CAAGAGAAGGTTAAAGCTGTTGAAGCACCAATGCTTTATACTTGTGGAATCTGTAATAAA 347
Query 355 GGTTACAGGAGTTCCAAGGCTCATGAGCAGCATCTT-AAGTCGAAGAGTCATGTTTTGAA 413
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 348 GGTTACAGGAGTTCCAAGGCTCATGAGCAGCAT-TTGAAGTCGAAGAGTCACGTTTTGAA 406
Query 414 GGCTTCGACGAGT-ACTGGAGAGGAGGATAAAGCGATCATCAAGCAGCTTCCGCCTCGTC 472
||||||||||||| || |||||| ||||||||||||| || ||||||||||| |||||||
Sbjct 407 GGCTTCGACGAGTAAC-GGAGAGCAGGATAAAGCGATTATTAAGCAGCTTCCTCCTCGTC 465
Query 473 GTGTTGAGAAGAATAACACTGCTCAATTGAAGGGTTCGATT---G-AG-GAG-GAAGAGA 526
||||||||||||||||| ||||||||||||||||||||||| | || ||| |||||||
Sbjct 466 GTGTTGAGAAGAATAACCCTGCTCAATTGAAGGGTTCGATTGAGGAAGAGAGTGAAGAGA 525
Query 527 GTGAAGATGAATGGATTGAGGTTGATTCGGATGAGGATTTGGATGCGGAAATGAATGAGG 586
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 526 GTGAAGATGAATGGACTGAGGTTGATTCGGATGAGGATTTGGATGCGGATATGAATGAGG 585
Query 587 ATG--G-TGAAGAAGAAGATATGGATGAAGATGGTATTGAATTTGAGTTGGATCCG-GCT 642
||| | |||||||||||||||||||| ||||||||||| ||||||||||||||| | |
Sbjct 586 ATGCTGAAGAAGAAGAAGATATGGATGAGGATGGTATTGAGTTTGAGTTGGATCCGTG-T 644
Query 643 TGTTGTTTGATGTGTGATAAGAAGCATAAGACTATAGAGAAATGTATGGTTCATATGCAT 702
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 645 TGTTGTTTGATGTGTGATAAGAAGCATAAGACGATTGAAAAATGTATGGTTCATATGCAT 704
Query 703 AAGTTTCATGGGTTCTTCATTCCTGATATTGAGTACTTGAAGGATCCTAAAGGGTTTCTG 762
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 705 AAGTTCCATGGGTTTTTCATTCCTGATATCGAGTACTTGAAGGATCCTAAAGGGTTTTTA 764
Query 763 ACCTACCTCGGTCTAAAGGTCAAGAGAGACTTCGTGTGTCTGTACTGCAATGAATTGTGC 822
|| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 765 ACTTACCTCGGTCTAAAGGTCAAGAGAGACTTTGTGTGTTTGTACTGCAATGAATTGTGC 824
Query 823 CATCCATTTAGTAGTTTGGAAGCTGTTCGTAAGCATATGGACGCCAAAGGTCATTGCAAA 882
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 825 CATCCATTTAGCAGTTTGGAAGCTGTTCGAAAGCATATGGACGCCAAAGGTCATTGCAAA 884
Query 883 GTGCATTATGGTGATGGTGGTGATGAAGAAGATGCAGAACTTGAAGAGTTCTATGACTAC 942
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 885 GTGCATTATGGTGATGGTGGTGATGAAGAAGATGCAGAACTTGATGAGTTCTACGACTAC 944
Query 943 AGCAGCAGCTATGTCAATGGAGACGAAAATCAGATGGTTGTGTCCGGTGAGTCAGTGAAC 1002
||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 945 AGCAGCAGCTATGCCATTGGAGACGATAATCAGATGGTTGTGTCTGGTGAGTCAGTGAAC 1004
Query 1003 ACTGTAGAGCTTTTTGGTGGGTCTGAGCTTGTGATCACCAAGAGAACCGATAACAAAGTA 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 ACTGTAGAGCTTTTTGGTGGGTCTGAGCTTGTGATCACCAAGAGAACCGATAACAAAGTA 1064
Query 1063 ACGTCTAGGACTCTTGGGTCTCGAGAATTCATGCGCTACTACAAACAGAAGCCAGCACCG 1122
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1065 ACGTCTAGGACTCTTGGGTCTCGTGAATTCATGCGCTACTACAAACAGAAGCCACCACCA 1124
Query 1123 TCTTCTCAGAAGCATATTGTCAACTCTCTAACCTCCAGGTACAAGATGATGGGTCTAGCA 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCTTCTCAGAAGCATATTGTCAACTCTCTAACCTCCAGGTACAAGATGATGGGTCTAGCA 1184
Query 1183 ACAGTGCAGTCAAAGGAGGCCATAGTGAGGATGAAGGTGATGAGAGAGATGAACAAAAGA 1242
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACAGTGCAGTCGAAGGAGGACATAGTGAGGATGAAGGTGATGAGAGAGATGAACAAAAGA 1244
Query 1243 GGAGCGAAAAGCAGTGTCAGGCTCGGAATGAAGAGCAACGTCATCAGGAATCTGCCCAAC 1302
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1245 GGAGCGAAAAGCAGTGTTAGGCTCGGAATGAAGAGCAACGTCATCAGAAATCTGCCCAAC 1304
Query 1303 AATGTCACCTATTAGTCTTGCTCCTCGATTTTCAGGTCTCTCCTCTTTGTTTGATTTTGT 1362
|| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1305 AACGTCACTTATTAGTCTTGTTCCTCAATTTTCAGGTCTCTCCTCTTTGTTTGATTTTGT 1364
Query 1363 G--A----CCAGAGTTTTGGTGAGTAAATC 1386
| | ||||||||||||||||| ||||
Sbjct 1365 GTCAAAAACCAGAGTTTTGGTGAGTGAATC 1394
> Ahg328581 jgi|Araly1|328581|fgenesh1_pm.C_scaffold_7000808
Length=1218
Score = 233 bits (126), Expect = 2e-60
Identities = 273/342 (80%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 136 GGTTTAGCTTGTAATTCGTGTAACAAAGACTTCGAA-GACGACGCTGAGCAG-AAGTTTC 193
|||||| | ||||| |||| |||| || ||| || ||||| | |||| | || |||
Sbjct 7 GGTTTAACATGTAACGCGTGCAACATGGAGTTC-AAGGACGAAGAAGAGC-GTAACCTTC 64
Query 194 ACTACAAATCCGAATGGCACCGTTACAATCTCAAGCGCAAGATAGCTGGTGTTCCTGGAG 253
| ||||||||||| |||||||| |||||||||||||||||| | ||||| ||||||||||
Sbjct 65 ATTACAAATCCGATTGGCACCGCTACAATCTCAAGCGCAAGGTGGCTGGAGTTCCTGGAG 124
Query 254 TAACAGAGGCAC-TATTTGAAGCTAGACAAGCTGCTATAGCTCAAGAGAAGGTTAAAGCT 312
| ||||| || | | ||||| ||||||||| ||||| | |||| |||||| |||| |
Sbjct 125 TTACAGAAGC-CTTGTTTGAGGCTAGACAATCTGCTCTTGCTCTGGAGAAGAATAAATCA 183
Query 313 GTTGAAGCACCGATGCTTTATAGTTGTGGAATCTGTAACAAAGGTTACAGGAGTTCCAAG 372
||||||||| |||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct 184 AATGAAGCACCTATGCTTTATACTTGTGGGATCTGTGGTAAAGGTTACAGGAGTTCCAAG 243
Query 373 GCTCATGAGCAGCATCTTAAGTCGAAGAGTCATGTTTTGAAGGCTTCGACGAG-----T- 426
|||||||||||||||||| ||||| ||| ||||||||| || ||| || || |
Sbjct 244 GCTCATGAGCAGCATCTTCAGTCGCGGAGCCATGTTTTGCGGGTTTC-ACAAGGGGCATC 302
Query 427 A--C--TGGAGAGGAGGATAAAGCGATCATCAAGCAGCTTCC 464
| | |||||||||||||| |||||| |||| ||| |||||
Sbjct 303 AATCAATGGAGAGGAGGATATAGCGATTATCAGGCAACTTCC 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57706721175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5