BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24510.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899807 jgi|Araly1|899807|Al_scaffold_0004_457 977 0.0
Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 551 3e-156
> Ahg899807 jgi|Araly1|899807|Al_scaffold_0004_457
Length=1125
Score = 977 bits (529), Expect = 0.0
Identities = 628/675 (93%), Gaps = 10/675 (1%)
Strand=Plus/Plus
Query 84 GGGAAACACTAGACTTGTGGTTTGGGACTCCAGTACCGGTGAAACCCGGTGGATCAAACC 143
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 297 GGGAAACACTAGCCTTGTGGTTTGGGACTCCAGTACCGGTGAAACCCGGCGGATCAGACC 356
Query 144 GAGAACTCGTTTTCGGAATGATGATTACTATGGTTTAGGATACGTAAACAGCAAGTCTTC 203
||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 GAGAACTCGTTATCGGTATGATGATTACTATGCTTTAGGATACGTAAACAGCAAGTCTTC 416
Query 204 TGGCCATAGCTTCAAAATCTTGAGGTCTTGCTATTATAGAAA-CGACCAGAAACAATGGG 262
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||
Sbjct 417 TGGCCATAGCTTCAAAATCTTGAGGTCTTGCTATTAT-GAAAACGACCAGAAACAAAGGG 475
Query 263 TTGCTGAGTTTGAGATCTATGAGTTTGGCTCTGA-TACTTGGAGGGTTCTTGATTACTTC 321
||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 476 TTGCTGAGTTTGAGATCTATGAGTTAAGCTCTGACT-CTTGGAGGGTTCTTGATTACTTC 534
Query 322 ACTCATGACTATGGTGTATTTT-CAAGTGGCGGGCCCTTGAAAAGAAACACTTACTGGGT 380
|||| ||||||||||||||||| || ||||| || | |||||| |||| ||||| |||||
Sbjct 535 ACTCGTGACTATGGTGTATTTTGCA-GTGGCAGGTCTTTGAAAGGAAATACTTATTGGGT 593
Query 381 TGCTGGAGATAAAGAAA-TGGGCATGTTCATGTTGTATTTTGATTTCACAAGGGAGAGAT 439
||||||||||||||||| ||| | | ||||||||||||||||||||||||| ||||||||
Sbjct 594 TGCTGGAGATAAAGAAAATGGCCTT-TTCATGTTGTATTTTGATTTCACAACGGAGAGAT 652
Query 440 TTGGGCATTTTCCTCTTCCGTTT-AAGAGTTTTAATCGTGAAGATACTGCTTCTCTATCA 498
|||||| |||||||||||||||| || |||||||||| ||||||||| || ||||||||
Sbjct 653 TTGGGCGTTTTCCTCTTCCGTTTGAA-AGTTTTAATCCTGAAGATACCGCGGCTCTATCA 711
Query 499 GTTGTTAGGGAAGAAAAACTCTCAGTGTTACATCAAAAGATTCTTGAATTTTCAAATGAG 558
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 712 GTTGTTAGGGAAGAAAAACTCTCGGTGTTACATCAGAAGATTCTTGATTTTTCAAATGAG 771
Query 559 ATGAAGATATGGTTGACCAATAAGATTGATGAAACCATAGAATTGTCGTGGAGCAACTTC 618
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 772 ATGAAGATATGGTTGACCAATAAGATCGATGAAACCATAGAATTGTCGTGGAGCAACTTC 831
Query 619 GTCTTAACAGTGGATTATGATAAGTTTAATTTACCGAGCGTGGTGAATGTGGCAAGTTTC 678
||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 832 GTCTTAACAGTGGATTATGATAAATTTAATTTACCCAGCGTGGTGAATGTGACAAGTTTC 891
Query 679 TTGTTGGATGAGGAGAATAAAGTGGCAGTGTGTTCTGATATTGACGTGGATGATGAAAAT 738
|||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||| ||
Sbjct 892 TTGTTGGACGAGGAGAATAAAGTGGCACTGTGTTCTGATATCGACATGGATGATGAATAT 951
Query 739 AGGACCAGAGTCTAC 753
| |||||||||||||
Sbjct 952 AAGACCAGAGTCTAC 966
> Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1
Length=1112
Score = 551 bits (298), Expect = 3e-156
Identities = 560/683 (82%), Gaps = 32/683 (5%)
Strand=Plus/Plus
Query 87 AAACACTAGACTTGTGGTTTGGGACTCCA-GTACCGGTGAAACCCGGTGGATCAAACCG- 144
|||||||||||| || |||||| || ||| |||||||| ||||| ||||||||||| ||
Sbjct 276 AAACACTAGACTCGTTGTTTGGAAC-CCACGTACCGGTCAAACCAGGTGGATCAAA-CGC 333
Query 145 AG-AACTCGTTTTCGGAATGATGATTACTATGGT-TTAGGATACGTAAACAGCAAGTCTT 202
|| | | ||| |||| ||| |||| ||| || || ||||||||||||||||||||||
Sbjct 334 AGTGA-TTGTTACCGGAGTGAGGATTTGTATTGTCTT-GGATACGTAAACAGCAAGTCTT 391
Query 203 CTGGCCATAGCTTCAAAATCTTGAGGTCTTGCTATTA-TAGAAACGACCAGAAACAATGG 261
|| ||||||| |||||||||||||| ||||| ||| || ||||||||||| ||
Sbjct 392 CTTACCATAGCCACAAAATCTTGAGGTATTGCTTTTATTA-CAACGACCAGAATGTTTGT 450
Query 262 GTTGCTGAGTTTGAGATCTATGAGTTTGGCTCTGATACTTGGAGGGTTCTTGATTACTTC 321
|||| ||| |||||||||||||| ||| |||||||| | ||||||||||||||| ||| |
Sbjct 451 GTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGACTGC 510
Query 322 ACTCATGACTATGG-TGTATT-TTCAAGTGGCGGGCCCTTGAAAAGAAACACTTACTGGG 379
|||||| ||| || | |||| | ||| |||| | | |||||| |||| ||||||| |
Sbjct 511 ACTCATAACTGGGGCT-TATTCTGCAA-TGGCATGTCTTTGAAAGGAAATACTTACTTTG 568
Query 380 TTGCTGGAGATA-AAGAAATGGGCA-TGTTCATGTTGTATTTTGATTTCACA-AGGGAGA 436
|||||||||| | |||||| || | | |||||| ||||||||||||||| | | ||||
Sbjct 569 TTGCTGGAGA-ACAAGAAACAGG-ATTTTTCATGCTGTATTTTGATTTCA-AGACAGAGA 625
Query 437 GATTTGGGCATTTTCCTCTTCCGT-TTAAGAGTTTT-AATCGTGAAGATACTGC-TTCTC 493
|||||| || | | |||||||||| | || |||||| | || |||||| ||||| | ||
Sbjct 626 GATTTGAGCGTCTCCCTCTTCCGTATCAA-AGTTTTGATTC-TGAAGAAACTGCGGT-TC 682
Query 494 TATCAGTTGTTAGGGAAGAAAAACTCT-CAGTGTTACATCAAAAGATTCTTGAATTTTCA 552
||||||||||||||||||||||||| | | |||||||| || || |||| | || |||
Sbjct 683 TATCAGTTGTTAGGGAAGAAAAACT-TGCGGTGTTACAGCAGAATATTCAAGCGTTGTCA 741
Query 553 AATGAGATGAAGATATGGTTGACCAATAAGATTGATGAAACCATAGAATTGTCGTGGAGC 612
|||||||||| ||||||| | ||||||||||||||||| ||| ||| ||| ||||||||
Sbjct 742 AATGAGATGAGGATATGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGACGTGGAGC 801
Query 613 AACTTCGTCTTAACAGTGGATTATGATA-AGTTTAATTTACCGAGCGTGG-TGAATGTGG 670
|||||||||||||||||||||||||||| | |||| |||||| || ||| | ||||||
Sbjct 802 AACTTCGTCTTAACAGTGGATTATGATAGA-TTTAGTTTACCAAGTGTGAAT-AATGTGT 859
Query 671 CAAGTTTCTTGTTGGATGAGGAGAATAAAGTGGCAGTGTGTTCTGATATTGACGTGGATG 730
|||| ||||||||||| |||||||||||||||||| |||||| ||||| ||| ||||||
Sbjct 860 CAAGCTTCTTGTTGGACGAGGAGAATAAAGTGGCATTGTGTTGTGATAGAGACATGGATG 919
Query 731 ATGAAAATAGGACCAGAGTCTAC 753
||||| ||| |||||||||||||
Sbjct 920 ATGAAGATAAGACCAGAGTCTAC 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5