BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24530.1
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932510 jgi|Araly1|932510|scaffold_400498.1 1886 0.0
Ahg491593 jgi|Araly1|491593|fgenesh2_kg.7__1026__AT4G31440.1 193 5e-48
> Ahg932510 jgi|Araly1|932510|scaffold_400498.1
Length=1271
Score = 1886 bits (1021), Expect = 0.0
Identities = 1186/1264 (94%), Gaps = 18/1264 (1%)
Strand=Plus/Plus
Query 302 AGAGTAATCATGCAACGTTCTCAAGATCAGAGGATTAG-CTTGTGTGAATTGAAAGAGCA 360
|||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 12 AGAGTAATCATGCAACGTTCTCAATATCAGAGGATT-GATTTGTGTGAATTGAAAGAGCA 70
Query 361 TATTGTGAAGAAGACCGGTGTCGAAAGATCGAGAAGGTATTTCTATTATCTAGGCAGGTT 420
|||||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 71 TATTGTGAAGAAGATTGGTGTCGAAAGATCGACAAGGTATTTTTATTACCTAGGCAGGTT 130
Query 421 TCTAAGTCAGAAGCTTACTAAGAGTGAGTTTGATAAGACGTGTTTGAGGTTGTTAGGGAG 480
||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 131 TCTGAGTCAGAAGCTTACTAAGAGTGAATTTGATAAGACATGCTTGAGGTTGTTAGGGAG 190
Query 481 GGAGAATCTCTCTTTACATAACCAGTTGATACGTTCGATCTTGAGGAATGCGACTGTTGC 540
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 191 GGAGAATCTCTCTTTACACAACCAGTTGATCCGTTCGATCTTGAGGAATGCAACTGTCGC 250
Query 541 TAAGTCACCACCTCCAGATCATGAAGCTGGTCATTCGACT-AA-----GGCGAATGCTTT 594
|||||||||||| ||||||||||||| ||||||||||||| || || |||||||||
Sbjct 251 TAAGTCACCACCACCAGATCATGAAGTTGGTCATTCGACTAAACCTTTGGTGAATGCTTT 310
Query 595 TCAGAGTAGAGGAGACGGTCTTGAGCAAAGTGGAACTTTAATCCCTAATCATAGTCAGCA 654
||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 311 TCAAAGTAGAGGAGATGGTCTTGAGCAAAGTGGATCTTTAATCCCTAATCATAATCAGCA 370
Query 655 TGAGCCTGTTTGGTCTAACGGGGTTTTGCCTATCTCTCCGCGGAAAGTTAGGTCTGGAAT 714
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 371 TGAGCCTGTTTGGTCCAACGGGGTTTTGCCCATCTCTCCGCGGAAAGTTAGGTCTGGAAT 430
Query 715 GCAG-AACAGGAAGAGCAGAGATAGGCCTAGTCCACTAGGGTCAAATGGGAAGGTTGAAC 773
|| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 431 GC-GTGACAGGAAGAGCAGAGATAGGCCTAGTCCACTAGGGTCAAACGGGAAGGTTGAAC 489
Query 774 ATATGTTGCATCAGCCAGTTTGTAGAGAAGACAATAGAGGTAGTGTTGGTATGGAAAATG 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 ATATGTTGCATCAGCCAGTTTGTAGAGAAGACAATAGAGGTAGTGTTGGTATGGAAAATG 549
Query 834 GGGATTATCAAAGATCAGGCAGATATGTTGCTGATGAAAAAGATGGTGAGTTTCTTCGTC 893
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 550 GGGATTATCAAAGATCAGGCAGATATGTTGCTGATGAAAGAGATGGTGAATTTCTTCGTC 609
Query 894 CCGTGGAAAAACCGAGAATACCAAATAAGGAAAAGATTGCAGCTGTGTCTATGAGAGATG 953
||||||||||||| ||||||| ||||||||||||| ||||| ||| ||||||||||||||
Sbjct 610 CCGTGGAAAAACCAAGAATACTAAATAAGGAAAAGGTTGCAACTGCGTCTATGAGAGATG 669
Query 954 ATCAGAATCAAGAAGAGCAGGCTAGAG-TAAATCTATCAATGAGTCCTCTTATTGCACCT 1012
|| |||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||
Sbjct 670 ATGAGAATCAAGAAGAGCAGGCTAG-GCTAAATTTATCAATGAGTCCCCTTATTGCACCT 728
Query 1013 CTAGGGATTCCATTTTGTTCAGCTAGTGTCGGTGGGTCCCCTAGAACGATACCTGTTTCA 1072
|||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 729 CTAGGGATTCCATTTTGTTCAGCTAGTGTCGGTGGGTCCCGTAGAACGGTTCCTGTTTCA 788
Query 1073 ACCAACGCTGAGTTAATTAGTTGCTATGACAGTGGTGGATTACCTGATATAGAGATGCTG 1132
|||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 789 ACCAGCGCTGAGCTAATTAGTTGCTATGACAGTGGTGGATTACCCGATATAGAGATGCTA 848
Query 1133 AGGAAAAGAATGGAGAATATTGCTGTAGCACAGGGTCTTGAAGGTGTTTCGATGGAGTGT 1192
|||||||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 849 AGGAAAAGGATGGAGAATATTGCAGTAGCACAGGGTCTTGAAGGGGTTTCGGTGGAGTGT 908
Query 1193 GCTAAGACGTTGAATAACATGTTGGATGTATATCTGAAGAAGCTGATCAATTCTTGCTTT 1252
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 909 GCTAAGACGTTGAATAACATGTTGGATGTGTATCTGAAGAAGCTGATCAAATCGTGCTTT 968
Query 1253 GATTTGGTTGGAGCCCGGTCCACAAATGGAGATCCTGGGAAACAA-CGTATAGGCAAGCA 1311
||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 969 GATTTGGTTGGAGCCCGGTCCACTAATGGAGATCCTGGGAAACAAAC-TATAGGCAAGCA 1027
Query 1312 GCAGAGTCAAAACAAGATTGTAAATGGGGTGTGGCCAACTAACAGTTTGAAAATACAAAC 1371
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1028 GCAGAGTCAAAACAAGATTGTAAATGGGGTGTGGCCAAGTAACAGTTTGAAAATAGAAAC 1087
Query 1372 TCCTAATGGGTCTTCTGATATAAGACAAGATCATCATTCTGTGTCTATGCTTGATTTTAG 1431
||| |||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1088 TCCCAATGGGCCTTCTGATATAACACAAGATCATCATTCTGTGTCTCTGCTTGATTTTAG 1147
Query 1432 AACTGCCATGGAGTTAAATCCAC-GCCAGCTTGGCGAAGACTGGCCAACTCTCCGAGAGA 1490
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1148 AACTGCCATGGAGTTAAATCCACAGC-AGCTTGGCGAAGACTGGCCAACTCTCCGAGAGA 1206
Query 1491 GAATTTC-ATTGCGGTCTTTCGAGGAACAAGACTTTGAGGTGTGAAAGACATCTTGAGCA 1549
||||||| || |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1207 GAATTTCCAT-GCGGTCTTTCGAGGAACAAGACTTCGAGGTGTGAAAGACATCTTCCGCA 1265
Query 1550 TGCT 1553
||||
Sbjct 1266 TGCT 1269
> Ahg491593 jgi|Araly1|491593|fgenesh2_kg.7__1026__AT4G31440.1
Length=1185
Score = 193 bits (104), Expect = 5e-48
Identities = 207/256 (81%), Gaps = 10/256 (4%)
Strand=Plus/Plus
Query 311 ATGCAACGTTC-TCAAGATCAGAGGATT-AGCTTGTGTGAATTGAAAGAGCATATTGTGA 368
|||||||| || |||||||| ||| || | || | ||| |||||| |||||| ||||
Sbjct 1 ATGCAACG-TCTTCAAGATCCCAGGGTTGATCTAG-CTGACCTGAAAGTGCATATAGTGA 58
Query 369 AGAAGACCGGTGTCGAAAGATCGAGAAGGTATTTCTATTATC-TAGGCAGGTTTCTAAGT 427
|||||| || || |||||||| ||||||||||| || || | | ||||||||||| |||
Sbjct 59 AGAAGATTGGGGTTGAAAGATCTAGAAGGTATTTTTACTA-CTTGGGCAGGTTTCTGAGT 117
Query 428 CAGAAGCTTACTAAGAGTGAGTTTGATAAGACGTGTTTGAGG-TTGTTAGGGAGGGAGAA 486
|||||||||||||||||||||||||||||| | ||||| | || || ||||| |||||
Sbjct 118 CAGAAGCTTACTAAGAGTGAGTTTGATAAGTCATGTTTCCGTCTT-TTGGGGAGAGAGAA 176
Query 487 TCTCTCTTTACATAACCAGTTGATACGTTCGATCTTGAGGAATGCGA-CTGTTGCTAAGT 545
||| ||| |||| ||| ||||||| ||||| |||||||| ||||| | || | ||||| |
Sbjct 177 TCTTTCTCTACACAACAAGTTGATTCGTTCCATCTTGAGAAATGC-ATCTCTAGCTAAAT 235
Query 546 CACCACCTCCAGATCA 561
| ||||| |||| |||
Sbjct 236 CCCCACCACCAGGTCA 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68600531245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5