BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24540.1
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481310 jgi|Araly1|481310|fgenesh2_kg.4__370__AT2G24540.1 1620 0.0
> Ahg481310 jgi|Araly1|481310|fgenesh2_kg.4__370__AT2G24540.1
Length=1137
Score = 1620 bits (877), Expect = 0.0
Identities = 1036/1112 (93%), Gaps = 14/1112 (1%)
Strand=Plus/Plus
Query 130 GAAACAAGAACAAAATCTCAGCCATTGATTTCAGGTCTACCAAATGATATAGCTGAGCTT 189
||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 33 GAAACAAGAACAAAAACTCAGCCATTGATCCCAGGTTTACCAAATGATATCGCTGAGCTT 92
Query 190 TGTCTTCTTCGTCTTCCTTACCCATACCATGCTCTATATCGCTCTGTTTCATCTTCATGG 249
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 93 TGTCTTCTTCGTCTTCCTTACCCATACCATGCTCTCTTTCGCTCTGTTTCATCTTCATGG 152
Query 250 AACAAAACCATCACAAACCCTAGATTCCTCTTCTCCAAGCAATCTCTTTCTATCTCTTCT 309
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 153 AACAAAACCATCACAAACCCTAGATTCCTCCTCTCCAAGCAATCTCTTTCTATCTCTTCT 212
Query 310 CCTTACCTATTTGTCTTCGCTTTCAACAAATCAACGGCTAGGATTCAATGGCAATCCCTT 369
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 213 CCTTACCTATTTGTCTTCGCTTTCAACAAATCAACGGCTAAGATTCAATGGCAATCCCTC 272
Query 370 GACCTTGCATCTGGCCGTTGGTTTGTTTTACCTCCCATGCCAAACTCTTTC-ACCAAAAT 428
||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 273 GACCTCGCATCTGGCCGTTGGTTTGTCTTACCTCCCATGCCAAACTCTTTCAACC-AAAT 331
Query 429 CTCGTCTCCTCACGCACTCTCATGCGCGTCGATG-CCACGTCAGGGGAAGCTTTTTGTAC 487
||||||||||||||| |||||||||||||||| | |||||||||||||||||||| || |
Sbjct 332 CTCGTCTCCTCACGCGCTCTCATGCGCGTCGA-GTCCACGTCAGGGGAAGCTTTTCGTCC 390
Query 488 TCGGCGGCGGAGA-TGTAAACCGCTCCGCCGTCGTTTACACTGCTCTAACGAATCGTTGG 546
||||||||||||| | |||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct 391 TCGGCGGCGGAGACT-TAAACCGCTCCGCCGTTGTTTACACGGCTTTAACGAATCGTTGG 449
Query 547 TCGTGTATATCTCCGATGATGAGCCCGAGAACGTACTTCGTCTCCGGGAATGTTAACGGT 606
|||||||| |||||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct 450 TCGTGTATTTCTCCGATGATGAGTCCGAGAACTTACTTTAACGCCGGGAATGTTAACGGC 509
Query 607 AAAATCATGGCCGTTGGTGGGAGTGTGGGCGGAAACGGAGAAGCAACTACGGAAGTTGAA 666
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 510 AAAATCATGGCCGTTGGTGGGAGTGTGGGCGGAAACGGAGAAGCGACGACGGAAGTTGAA 569
Query 667 TCGTATGATCCAGATAATGACACGTGGACGGTTGTGAAGAAGTTGCCGATGGTGTTGGCG 726
||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 570 TCGTACGATCCAGAGAATGACACGTGGACGGCTGTGAAGAAACTGCCGATGGTGTTGGCG 629
Query 727 AAGTATGACTCAGCCGTGATCGGGAAAGAGATGTGTGTAACAGAAGGATGGGCGTGGCCG 786
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 630 AAGTATGACTCAGCCGTGATCGGGAAAAAGATGTGTGTGACAGAAGGATGGGCGTGGCCG 689
Query 787 TTCATGTTTCCACCGATGGGACAAGTGTACGACTCCGACGAAGGCACGTGGCGAGAGATG 846
||||||||| ||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 690 TTCATGTTTTCACCGATGGGACAAGTGTACGACTCAGATGAAGACACGTGGCGAGAGATG 749
Query 847 AGCGGTGGGATGAAAGAAGGGTGGACGGGTGTGAGCGTCGTGATCCGCGACAGGCTGTTT 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 750 AGCGGTGGGATGAAAGAAGGGTGGACGGGTGTGAGCGTCGTGATCCGCGACAGGTTGTTT 809
Query 907 GTGATCTCGGAGCACGGTGATTTTCCGATGAAGGTTTATTGTTCAGATGATGACACGTGG 966
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 810 GTGATCTCCGAGCATGGTGATTTTCCGATGAAGGTGTATTGTTCAGATGATGACACGTGG 869
Query 967 AGGTACGTGAGTGGTGAGAAGCTACAGGGGGAGAAGATGCGGCGTCCTTTCGCCGTGAC- 1025
||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||
Sbjct 870 AGGTACGTGAGTGGTGACAAGCTTCCTGCGGAGAAGATGCGGCGTCCTTTCGCCGTGACC 929
Query 1026 GGG-AGCTGATGATCGTGTGTTTGTGGTGGCCAGTGGGATTAACGTAGCGGAAGGGAGAG 1084
||| || |||||||||||||||||||||||| ||||| |||| ||||||||||||||||
Sbjct 930 GGGGAG--GATGATCGTGTGTTTGTGGTGGCCGGTGGGCTTAATGTAGCGGAAGGGAGAG 987
Query 1085 TGAGTGAAGGG-CAAAATGGGGATTTTAGTGTTGAGTGGAGGATGGTTTCGTCTCCTAAA 1143
||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 988 TGAGT-AAGGGACAAAATGGGGAATTTAGTGTTCAGTGGAGGATGGTTTCGTCTCCCAAA 1046
Query 1144 AGTTCTATTCAGTTTTCACCTGCTAGTTGTCATGTGCT-ATATGTTTGATGTGTAATTGT 1202
||||||| ||| ||||||||||||||||| ||||| || ||| || | || |||||||||
Sbjct 1047 AGTTCTACTCAATTTTCACCTGCTAGTTGCCATGT-CTTATACGTCTAATATGTAATTGT 1105
Query 1203 TGTTAGTTTTGAATTTGTAAACTCTTTTCACT 1234
||||||||||||||||||||| ||||||||||
Sbjct 1106 TGTTAGTTTTGAATTTGTAAAATCTTTTCACT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46814942076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5