BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24550.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481311 jgi|Araly1|481311|fgenesh2_kg.4__371__AT2G24550.1 1249 0.0
> Ahg481311 jgi|Araly1|481311|fgenesh2_kg.4__371__AT2G24550.1
Length=973
Score = 1249 bits (676), Expect = 0.0
Identities = 860/941 (91%), Gaps = 43/941 (5%)
Strand=Plus/Plus
Query 170 ATATGGAGGTTATGGTTGGTTCGTCGTTTGGAATCGGCATGGCGGCGTACGTTAGAGATC 229
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 68 ATATGGAGGTTATGGTTGGATCGTCTTTTGGAATCGGCATGGCGGCGTACGTTAGAGATC 127
Query 230 ATC-GCGGTGTTTCGGCGCAGGATAAGGCTGTTCAAACGGCTCTGTTCTTGGCTGATGAA 288
| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 128 -GCGGCGGTGTTTCGGCGCAGGATAAGGCTGTTCAAACGGCTTTGTTCTTGGCGGATGAA 186
Query 289 TCAGGACGTGGTGGATCACAGATCGGGATTGGATTAAGGATGAGTAATAATAATAATAAG 348
|| ||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||
Sbjct 187 TCGGGACGCGGTGGATCGCAGATCGGGATCGGATTAAGGATGAG---TAATAATAGTAAG 243
Query 349 TCGCCGGAGGAATCTTCGGATAGTTCGTCGTCTATCGGAGAAAGCAGTGAAAACGAGGAG 408
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 244 TCGCCGGAGGAATCGTCGGATAGTTCGTCGTCGATCGGAGAGAGCAGTGAAAACGAGGAG 303
Query 409 GAAGAAGAAGAAGACGACGCCGTTTCGTGCCAACGAGGAACACTTGATTCGTTTAGTTCT 468
| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 304 G-AG--GAAGAAGACGACGCCGTTTCGTGCCAAAGAGGAACACTTGATTCGTTTAGTTCT 360
Query 469 TCTCTTGAAGACTCTCTTCCTATTAAGAGAGGATTATCGAATCATTATGTCGGGAAATCG 528
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TCTCTTGAAGACTCTCTCCCGATTAAGAGAGGATTATCGAACCATTATGTCGGGAAATCG 420
Query 529 AAATCGTTTGGTAATTTAATGGAAGCAGCGAGTAAGGCGAAGGATTTGGAGAAAGTTGAG 588
||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 421 AAATCGTTTGGGAATTTAATGGAAGCTGCGAGTACCGCAAAGGATTTGGAGAAAGTTGAG 480
Query 589 AATCCATTTAACAAGAGGAGGAGATTGGTTATTGCTAATAAGTTAAGGAGGAGAGGAAGA 648
||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||
Sbjct 481 AATCCATTTAACAAGAGAAGGAGATTGGTTATTGCTAATAAGCTAAGGAGAAGAGGAAGA 540
Query 649 TCTATGTCAGCTTCGAATTTTTACTCGTGGCAAAACCCTAATTCAATGCCTTTACTTGCA 708
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTATGTCAGCATCGAATTTCTACTCGTGGCAAAACCCTAATTCAATGCCTTTACTTGCA 600
Query 709 CTCCAAGAACCTAATGAAGAGGATCATCACATTCACAatgatgattatgaggatgatgat 768
||||||||||||||||||||||||||||| |||||| || || | |
Sbjct 601 CTCCAAGAACCTAATGAAGAGGATCATCA----------GATGAT---GA---TG--G-T 641
Query 769 ggtgatggtgatgatcataggaagattatgatgatgatgaaaaataaaaaaGAGTTGATG 828
||||||| | |||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 642 GGTGATG---AC---CATAGGAAGATTATGATGATGATGAAGAATAAAAGAGATTTGATG 695
Query 829 GCTCAGACTCGAAGTTGTTTCTGTCTAAGTAGTTTGCAAGAGGAAgatgatggtgatggt 888
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GCTCAGACTCGAAGCTGTTTCTGTCTAAGTAGTTTGCAAGAGGAAGATGATGGTGATGGT 755
Query 889 gatgatgatgaagatgaatgatCAATCAAGTAACATTGTTTCTTTTAATACTTGTTTTTA 948
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 756 GATGATGA--A-GATGAATGATCAATCAAGTAACATTGTTTCTTTTAATACTTGTTTTAA 812
Query 949 ATTTGTTCTTCTCTTGTGAATTTGTTTTATTAAAGGGAGAGTTTAGAGGAAATTTCAGTG 1008
|||||||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||
Sbjct 813 ATTTGTTCTTCTCTTGTGAATTTGTTTTTTTTAAGGGAGAGTT-AGAGGAAGTTTCAGTG 871
Query 1009 ATAACAA-A--TGGTGGAAGATTTGATTTGTTAGGAATAATCATTATTAATCTATTCATT 1065
||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 872 ATAACAACAAGTGGTGGAAGATTTGATTTGTTAGGAATAATAATTATTAATCTATTCATT 931
Query 1066 AGTAGCAGC---CTTAAGACTTTTCCTAATCCCAAAAGACA 1103
||||| ||| |||||||||||||||||||||||||||||
Sbjct 932 AGTAGTAGCAGTCTTAAGACTTTTCCTAATCCCAAAAGACA 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5