BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24570.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481313 jgi|Araly1|481313|fgenesh2_kg.4__373__AT2G24570.1 1847 0.0
Ahg944827 jgi|Araly1|944827|scaffold_701056.1 453 1e-126
> Ahg481313 jgi|Araly1|481313|fgenesh2_kg.4__373__AT2G24570.1
Length=1298
Score = 1847 bits (1000), Expect = 0.0
Identities = 1214/1313 (92%), Gaps = 32/1313 (2%)
Strand=Plus/Plus
Query 3 TTTCGCTCTCTCATTCATCaaaaaaaaCTTGCACATCTTCTCAGATCTTCAAGTTTCTCC 62
||||||||||||||||||| | |||||||| ||||| |||||||||||||||
Sbjct 1 TTTCGCTCTCTCATTCATC-ACAAAAACTT-CACATTTTCTCAGATCTTCAA-------- 50
Query 63 TCTGGTTTCTCATCATGACCGTTGATATTATGCGTTTACCTAAGATGGAAGATCAAACGG 122
||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||
Sbjct 51 TCT--TTTCTCATCATGACCGTGGATATCATGCGCTTACCGAAGATGGAAGATCAAACGG 108
Query 123 CTATACAAGAAGCTGCATCACAAGGCTTAAAAAGCATGGAACACTTGATTCGTGTCCTCT 182
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 109 CTATACAAGAAGCTGCATCACAAGGCTTAAAAAGCATGGAACACTTGATTCATGTCCTCT 168
Query 183 CTAACCGTCCCGAAGAACGTAACGTTGATTGCTCTGAGATCACTGATTTCACAGTTTCTA 242
|||||||||| ||||||||| |||||||||| ||||| ||||| ||||||||||||||||
Sbjct 169 CTAACCGTCCTGAAGAACGTCACGTTGATTGTTCTGAAATCACCGATTTCACAGTTTCTA 228
Query 243 AGTTCAAGAAAGTTATCTCTCTTCTTAACCGTTCCGGTCACGCCCGGTTTAGACGTGGTC 302
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 229 AGTTCAAGAAAGTCATCTCTCTTCTTAACCGAACCGGTCACGCCCGGTTTCGACGTGGAC 288
Query 303 CGGTTCATT--CC-CCT-C--C-T--TCCTCCTCCGTTCCTCCACCGGTGAAAGTGACAA 353
||||||||| || ||| | | | ||||||||| ||||||||||||||||||| |||
Sbjct 289 CGGTTCATTCCCCTCCTCCTTCATCCTCCTCCTCCATTCCTCCACCGGTGAAAGTTACAC 348
Query 354 CTCCGGCTCCCACTCAGATCTCTGCTCCAGCACCGGTTAGCTTCGTTCAGGCAAATCAAC 413
|||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 349 CTCCGGCTCCAACTCAGATCTCTGCTCCGGCACCGGTTAGCTTCGTTCAGTCAAATCAAC 408
Query 414 AAAGCGTGACGTTAGATTTCACTAGACCGAGCGTTTTTGGCGCTAAAACCAAGAGCTCGG 473
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 409 AAAGCGTGACGTTAGATTTCACTAGACCAAGCGTGTTTGGCGCTAAAACCAAGAGCTCCG 468
Query 474 AGGTTGTTGAGTTTGCTAAAGAGAGCTTTAGCGTATCTTCTAACTCTTCTTTCATGTCTT 533
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 469 AGGTTGTTGAGTTCGCTAAGGAGAGTTTTAGCGTATCTTCTAACTCTTCTTTCATGTCTT 528
Query 534 CTGCGATCACCGGTGATGGAAGTGTCTCTAAAGGCTCTTCGATCTTTCTTGCTCCGGCTC 593
| |||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 529 CGGCGATCACCGGTGACGGAAGCGTCTCTAAAGGATCTTCTATCTTTCTTGCTCCGGCTC 588
Query 594 CAGCGGTGCCAGTGACTTCCTCCGGGAAACCGCCGCTTTCTGGTCTTCCTTACAGGAAGA 653
| ||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 589 CGGCGGTTCCATTGAATTCCTCCGGGAAACCGCCGCTCTCTGGTCTTCCTTACAGAAAGA 648
Query 654 GATGCTTTGAACATGACCACTCTGAAGG-CTTTTCCGGCAAGATCTCTGGCTCCGGCAAC 712
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 649 GATGCTTTGAACATGACCACTCCG-AGGACTTTTCCGGCAAGATCTCTGGCTCCGGCAAC 707
Query 713 GGCAAGTGCCATTGCAAGAAAAGCCGAAAAAATCGGATGAAGAGAACCGTGAGAGTACCG 772
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 708 GGCAAGTGCCACTGCAAGAAAAGCCGGAAAAATCGGATGAAGAGAACCGTGAGAGTACCG 767
Query 773 GCGGTAAGTGCAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGAAAGTATGGA 832
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 768 GCGATAAGTGCAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGGAAGTACGGA 827
Query 833 CAAAAACCGATCAAAGGCTCACCACATCCACGGGGTTATTACAAGTGTAGTACATTTAGA 892
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 828 CAAAAACCGATCAAAGGCTCACCACATCCACGAGGTTATTACAAGTGTAGTACATTCAGA 887
Query 893 GGATGTCCAGCGAGGAAACACGTGGAAAGAGCTTTGGATGATTCAACGATGTTGATTGTG 952
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 888 GGATGTCCAGCGAGGAAACACGTGGAACGAGCTTTGGATGATTCAACGATGCTGATTGTG 947
Query 953 ACGTACGAAGGAGAGCACCGTCATCACCAGTCCACGATGCAGGAGCATGTAACTCCTAGC 1012
|| |||||||| || |||||||| ||||||||| ||||||||||| || |||||||||||
Sbjct 948 ACTTACGAAGGGGAACACCGTCACCACCAGTCCGCGATGCAGGAGAATATAACTCCTAGC 1007
Query 1013 GTGAGTGGTTTGGTGTTTGGTTCGGCTTGAAGAATTAATTAGTTTGGTA-GTTTTGTAAT 1071
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1008 GTGAGTGGTTTGGTGTTTGGTTCTACTTGAAGAATTAATTAGTTTGGTAGGTTTTGTAAT 1067
Query 1072 ATTTTGAGAAATAGAGGGGTTGGTTTTGT-A-At-tt-ttt-ttCTATAACAAAATTAGT 1126
|||||||||||||||||||||| |||||| | || || ||| ||||| ||||||||||||
Sbjct 1068 ATTTTGAGAAATAGAGGGGTTGATTTTGTAATATCTTCTTTCTTCTA-AACAAAATTAGT 1126
Query 1127 TTTAGAtttttttttAGTAGTCTTTTGAATGGATTTTAATCTTACTACCGAGAAAGAAAA 1186
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TTTAGA-TTTTTTTTATTAGTCTTTTGAATGGATTTTAATCTTACTACCGAGAAAGAAAA 1185
Query 1187 AATTCTTACTACATTTTCATAATTTCTTGTTTGATATATTTAGTGGTGTCATGTAAGAAA 1246
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 1186 AATTCTTACTACATTTTCATAATTTCTTGTGTGATATATTTAGCGGTGTCATGTAAAAAA 1245
Query 1247 ATGATGTTTAGCAAAGTAATTGGTATATAAATGTGTAGGCATATGTAT-TTAA 1298
|||||||||||| |||||||||| ||||||||||||||| |||||||| ||||
Sbjct 1246 ATGATGTTTAGCGAAGTAATTGGCATATAAATGTGTAGGTATATGTATATTAA 1298
> Ahg944827 jgi|Araly1|944827|scaffold_701056.1
Length=1049
Score = 453 bits (245), Expect = 1e-126
Identities = 543/682 (80%), Gaps = 40/682 (6%)
Strand=Plus/Plus
Query 379 TCCAGCACCGGT-TAGCTTCGTTCAGGCAAATCAACAAAGCGTGACGTTAGATTTCACTA 437
|||| |||| || ||||| ||||| | ||||| | ||||| || | |||||| | |
Sbjct 365 TCCACCACC-GTCGAGCTTTGTTCACTCGAATCAGCCTAGCGTAACACTCGATTTCTCCA 423
Query 438 GACCGAGCGTTTTTGGCGCTAAAACCAAGAGCTCGGAGGTTGTTGAGTTTGCT-AAA-GA 495
||| ||| | || ||| | ||| | |||||||| || || || || || ||| ||
Sbjct 424 AACCAAGCATCTTCGGCACCAAAGCTAAGAGCTCCGA-CCTG--GA-ATT-CTCAAAGGA 478
Query 496 GAGCTTTAGCGTATCTTCT-AACTCTTCTTTCATGTCTTCTGCG-ATCACCGGTGATGGA 553
| ||| ||||| |||| | |||||||| |||||||| || | | || ||||| || ||
Sbjct 479 AAACTTCAGCGTTTCTT-TAAACTCTTCCTTCATGTCGTC-GGGAATTACCGGAGACGGC 536
Query 554 AGTGTCTCTAAAGGCTCTTCGATCTTTCTTGC-TCCGGCTCCAG-CGGTGCCAGTG-ACT 610
|| || || || || |||||||| || | | ||||| | || ||| ||| ||
Sbjct 537 AGCGTTTCCAATGG---AAAAATCTTTCTCGCGT-CTGCTCC-GTCGCAGCCTGTGAAC- 590
Query 611 TCCTCCGGGAAA-CCGCCGCTT----TCTGGTCTTCCTTACAGGAAGAGATGCTTTGAAC 665
|||||| ||||| || ||| || |||||| ||||||||| ||||||||| | || |
Sbjct 591 TCCTCC-GGAAAGCCACCG-TTGGCCGCTGGTCATCCTTACAGAAAGAGATGCCTCGAGC 648
Query 666 ATGACCACTCTGAAG-GCTTT-TCCGGC-AAGATCTCTGGCTCCGGCAACGGCAAGTGCC 722
|||| ||||| | || | ||| |||||| ||| |||| ||||||||| |||| |||||||
Sbjct 649 ATGAGCACTCCG-AGAG-TTTCTCCGGCAAAG-TCTCCGGCTCCGGCTACGGAAAGTGCC 705
Query 723 ATTGCAAGAAAAGCCGAAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGGTAAGTG 782
|||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 706 ATTGCAAGAAAAGCAGGAAAAATCGGATGAAGAGAACTGTGAGAGTACCGGCGATAAGTG 765
Query 783 CAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGAAAGTATGGACAAAAACCGA 842
|||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||
Sbjct 766 CAAAGATCGCCGATATTCCACCGGACGAATATTCTTGGAGGAAGTACGGACAAAAACCGA 825
Query 843 TCAAAGGCTCACCACATCCACGGGGTTATTACAAGTGTAGTACATTTAGAGGATGTCCAG 902
|||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||
Sbjct 826 TCAAAGGCTCACCACACCCACGTGGTTACTACAAGTGCAGTACATTCAGAGGATGTCCAG 885
Query 903 CGAGGAAACACGTGGAAAGAGCTTTGGATGATTCAACGATG-TTGATTGTGACGTACGAA 961
||||||||||||||||| |||| || |||||| || ||||| || || ||||| ||||||
Sbjct 886 CGAGGAAACACGTGGAACGAGCATTAGATGATCCAGCGATGCTT-ATCGTGACATACGAA 944
Query 962 GGAGAGCACCGTCATCACCAGTCCACGATGCAGGAGCATGTAACTCCT--AG-CGTGAGT 1018
||||||||||||||| |||| ||| ||||||||||| || | || || || ||| | |
Sbjct 945 GGAGAGCACCGTCATAACCAATCCGCGATGCAGGAGAATATTTCTTCTTCAGGCGTTAAT 1004
Query 1019 GGTTTGGTGTTTGGTTCGGCTT 1040
| ||| ||||||| |||||||
Sbjct 1005 GATTTAGTGTTTGCCTCGGCTT 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5