BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24580.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481314 jgi|Araly1|481314|fgenesh2_kg.4__374__AT2G24580.1 1969 0.0
> Ahg481314 jgi|Araly1|481314|fgenesh2_kg.4__374__AT2G24580.1
Length=1331
Score = 1969 bits (1066), Expect = 0.0
Identities = 1250/1339 (93%), Gaps = 12/1339 (1%)
Strand=Plus/Plus
Query 1 AAAGAGCATCAACAACAACCACACGCTTCTCAAACATCAAACCAAGCCTCTCTTTCACTT 60
|||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1 AAAGAGCAGCAACAACAACCACACGCTTCTCTAACAT-AAACCAAGCCTCTCTTTCACTT 59
Query 61 CCTCATGGAATATTCCGACGACGGCAGATTCGACGTGATTGTCGTTGGAGCAGGAGTTAT 120
||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 60 CCTCATGGAATATTCCGGCGATGGCAGATTCGACGTGATTGTCGTCGGAGCAGGCGTTAT 119
Query 121 GGGAAGCTCCGCCGCGTATCAGCTGGCAAAAAGAGGCCAGAAGACTCTTTTGTTAGAGCA 180
|||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||
Sbjct 120 GGGAAGCTCCGCCGCGTACCAGCTGGCGAAAAGAGGCCAGAAGACTCTCCTCTTAGAGCA 179
Query 181 ATTCGATTTCCTCCATCACCGTGGCTCTTCTCACGGCGAGTCACGCACCATACGTGCCAC 240
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 180 ATTCGATTTCCTCCACCACCGTGGCTCTTCTCACGGTGAGTCACGCACCATCCGTGCCAC 239
Query 241 TTACCCGGAGGATTACTACTACTCCATGGTTTCCGAGTCGACTCGGTTATGGGCTG-CGG 299
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |
Sbjct 240 TTACCCGGAGGATTACTACTACGCCATGGTTTCCGAGTCGACTAGGTTATGGGCTGAC-G 298
Query 300 CTCAGTCCGAGATTGGATACAAAGTTCATTTTCCAACTCAACAATTCGACATGGGTCCGG 359
||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct 299 CTCAGTCCGAGATCGGATACAAAGTCCATTTCCCAACTCAACAATTCGATATGGGTCCAG 358
Query 360 CAGATCAGCAGAGTCTCCTCTCCGTTGTGGCCACGTGTCAAAAACACGGGCTAGCTCATC 419
| |||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||
Sbjct 359 CTGATCAGCAGAGTCTCCTCTCTGTTGTTGCCACTTGTCAAAAACACGCGCTAGCTCATC 418
Query 420 GGGTTATGGATTCTCATGCAGTTTCCGAGCATTTCTCCGGGAGGATTAGTATCCCGGAGA 479
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGGTTATGGACTCTCATGCTGTTTCCGAGCATTTCTCCGGGAGGATTAGTATCCCGGAGA 478
Query 480 ATTGGATCGGAGTTTCGACGGAACTTGGTGGGATTATCAAACCCACCAAGGCCGTCTCCA 539
||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 479 ATTGGATCGGAGTCTCGACGGAACTTGGTGGGGTTATTAAACCCACCAAGGCCGTCTCCA 538
Query 540 TGTTTCAGACGCTTGCGATTGGACATGGTGCCATCTTAAGAGACAACACCAAAGTTGCAA 599
||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 539 TGTTTCAGACGCTTGCGTTTGGACATGGCGCTGTCTTAAGAGACAACACCAAAGTTGCAA 598
Query 600 ACATAAAGAGAGATGGTGAAAGTGGGGAAGGGGTAATAGTCTGCACGGTGAAAGGAGATA 659
||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 599 ACATAAAGAGAGACGGTGAAAACGGGGAAGGGGTAATAGTTTGCACTGTGAAAGGAGATA 658
Query 660 AGTTCTACGGTAAAAAATGCATTGTAACCGCGGGTGCATGGATAAGTAAGCTGGTGAAAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGTTCTACGGTAAAAAATGCATTGTAACCGCGGGTGCATGGATAAGTAAGCTGGTGAAAA 718
Query 720 CGGTGGCCGGGATAGATTTTCCGGTGGAGCCCCTTGAGACTACGGTGTGTTATTGGAGAA 779
|||||||||||||| |||||||||||||||| |||||||| || || | |||||||||||
Sbjct 719 CGGTGGCCGGGATAAATTTTCCGGTGGAGCCGCTTGAGACGACTGTTTATTATTGGAGAA 778
Query 780 TCAAAGAAGGCCACGAGGAGAAATTCACGATAGACGGAGAGTTTCCGACTTTCGCGTCAT 839
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 779 TCAAAGAAGGCCACGAGGAGAAATTCACGATCGACGGAGAGTTTCCAACTTTTGCGTCAT 838
Query 840 ACGGAGCTCCGTATGTGTACGGAACTCCGTCTTTGGAGTATCCGGGACTGATCAAAGTGG 899
|||||| |||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 839 ACGGAGTTCCGTACGTGTACGGAACTCCGTCATTAGAGTATCCGGGACTGATCAAAGTGG 898
Query 900 CGGTTCACGGTGGTTATTGGTGCGATCCGGATAAGAGGCCATGGGGGCCAGGAGTGAAGT 959
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 899 CGGTTCACGGTGGTTATTGGTGTGATCCGGATAAGAGGCCATGGGGACCAGGAGTGAAGC 958
Query 960 TAGAGGAGCTTAAAGAGTGGATAAAGGAGAGATTTGGAGGGATGGTTGATTCCGAAGGAC 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 959 TAGAGGAGCTTAAAGAGTGGATAAAGGAGAGATTTGGAGGGATGGTTGATTCGGAAGGAC 1018
Query 1020 CCGTGGCGACTCAGCTTTGTATGTATTCGATGACACCGGACGAGGATTTCGTGATTGATT 1079
| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 1019 CGGTGGCGACTCAGCTTTGTATGTATTCAATGACCCCGGACGAGGATTTCGTTATTGATT 1078
Query 1080 TTCTTGGAGGGGAGTTTGGGAGAGATGTGGTGGTAGGCGGCGGGTTTTCCGGTCATGGTT 1139
|||||||||||||||| ||||||||||| || || || || ||||||||||||||||| |
Sbjct 1079 TTCTTGGAGGGGAGTTAGGGAGAGATGTTGTTGTGGGTGGAGGGTTTTCCGGTCATGGGT 1138
Query 1140 TTAAGATGGCGCCGGCGGTGGGGAGGATACTGGCGGATATGGCGATGGA-GGTGGAGGCC 1198
|||||||||||||||| |||||||||||| ||||||||||||||||||| || | |||||
Sbjct 1139 TTAAGATGGCGCCGGCAGTGGGGAGGATATTGGCGGATATGGCGATGGAAGGAG-AGGCC 1197
Query 1199 GGAGGTGGAGGAGTTGAGATGAAACAGTTTAGTCTCCGACGGTTTGAAGATAATCCTAAA 1258
|||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1198 AGAGG---AGGAGTGGAGATGAAACAGTTTAGTCTCCGACGGTTTGAAGAGAATCCTAAA 1254
Query 1259 GGAAATGCAAAGGAGTATCCTGACCAAGTGATACTTGAT-GTCCCATTGAAACATTAAAC 1317
|| |||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1255 GGGAATGTAAAGGAGTATCCTGACCAAGTGATACTTGATTG-CCCGTTGAAACATTAAA- 1312
Query 1318 TTTG-TTACAAAATGTCAA 1335
|||| ||||||||||||||
Sbjct 1313 TTTGGTTACAAAATGTCAA 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5