BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24590.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481315 jgi|Araly1|481315|fgenesh2_kg.4__375__AT2G24590.1 1391 0.0
> Ahg481315 jgi|Araly1|481315|fgenesh2_kg.4__375__AT2G24590.1
Length=924
Score = 1391 bits (753), Expect = 0.0
Identities = 871/926 (94%), Gaps = 15/926 (2%)
Strand=Plus/Plus
Query 85 ATGTCGCGTGTGTATGTTGGTAATTTGGATCCGCGAGTTACTGAACGTGAACTCGAGGAT 144
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3 ATGTCGCGTGTGTATGTTGGTAATTTGGATCCGCGAGTTACTGAGCGTGAACTCGAGGAT 62
Query 145 GAGTTTCGT-TCCTTTGGTGTGATCAGGAGTGTCTGGGTTGCTAGAAGACCTCCTGGTTA 203
||||||||| | || |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 63 GAGTTTCGTGT-CTATGGTGTGATCAGGAGTGTTTGGGTTGCTAGAAGACCACCTGGTTA 121
Query 204 CGCTTTTCTTGATTTTGAAGATTCAAGAGATGCCCGTGACGCCATCCGTGAAGTAGATGG 263
||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 122 CGCCTTTCTTGATTTTGAAGATTCAAGAGATGCCCGAGACGCTATCCGTGAATTAGATGG 181
Query 264 CAAGAATGGATGGAGGGTAGAGCAGTCTCATAACcgtggtggtggtggaggtcgt----- 318
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 182 CAAGAATGGATGGAGGGTAGAGCAGTCTCATAACCGTGGTGGCGGTGGAGGTCGTGGAGG 241
Query 319 ----ggtggtggtcgtggaggaggtgatggtggtcgtggacgtggtggtTCTGATTTGAA 374
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 242 CGGCGGTGGGGGCCGTGGAGGAGGTGATGGTGGTCGTGGTCGTGGTGGTTCTGATTTGAA 301
Query 375 GTGCTATGAGTGTGGTGAGTCTGGTCACTTTGCACGTGAATGTCGTTCTCGTGGTGGTTC 434
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 302 GTGCTATGAGTGTGGTGAGTCTGGTCACTTTGCACGTGAATGCCGCTCTCGTGGTGGTTC 361
Query 435 TGGTGGTAGGCGTCGTAGCCGCAGCCGTAGTCGCAGTCCTCCTAGATACAGAAAGAGTCC 494
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 362 --G-GGTAGGCGTCGTAGCCGCAGCCGTAGTCGTAGTCCTCCTAGATACAGAAAGAGCCC 418
Query 495 TACCTATGGAGGACGAAGAAGTTACAGCCCTCGTGCTAGATCTCCTCCTCCTCCAAGACG 554
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 TACCTATGGAGGACGGAGGAGTTACAGCCCTCGTGCTAGATCTCCTCCTCCTCCAAGGCG 478
Query 555 TCGTAGTCCTTCTCCTCGTGGTCGCAACTACAGTAGGTCACCACCACCTTATAGAGCACG 614
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 TCGTAGTCCTTCTCCTCGTGGTCGTAACTACAGTAGGTCACCACCACCTTATAGAGCACG 538
Query 615 TGACGAGGTGCCATATGCTAATGGAAATGGTCTGAAAGATGTGCGCAGAAGCCGGAGCTG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGACGAGGTGCCATATGCTAATGGAAATGGTCTGAAAGATGTGCGCAGAAGCCGGAGCTG 598
Query 675 AGTGTTACTTGTCTAGATAGCAAATTATGGGATCAGGAGACAACTATTTGCTTGTGACGT 734
|||||| |||| ||||||||||| |||| |||||||||||| ||| ||||||||||| ||
Sbjct 599 AGTGTTTCTTGCCTAGATAGCAAGTTATTGGATCAGGAGACTACTGTTTGCTTGTGATGT 658
Query 735 CAAGAGGAGAGG-AAATTAGTATCTGTGAATTTCACTAAGAGAATATGTTTTAGCTGTGT 793
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 659 CAAGAGGACAGGGAAATTAGTATCTGTGAATTTCACTAAGAGAACATGTTTTAGCTGTGT 718
Query 794 GGTGGATTGGATATGCTTGCTACTTTTGAATTGCTGGAAAGCTTCTTATTGCGTTTGGAT 853
|||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 719 GGTGGATTGGATATGCTTGCTACTTTTGAATTCCTGGGATGCTTCTTATTGCGTTTGGAT 778
Query 854 TATGAAGCCATAGTTGTATCTGCCGTTAGGTAAAGTACTTTTAAATATCTACCCATGTTC 913
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 779 TATGAAGCCGTAGTTGTCTCTGCCGTTAGGTAAAGTACTTTTAAATATCTACCCAAGTTC 838
Query 914 TTAAAAGACATAAACAAAAGCTCTGCTAAAAACCTATGCATTTTCTTTGTTTTTTGTTCT 973
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 839 TTAAAAGACATAAACAAAAACTCTTCTAAAAACCTATGCATTTTCCTTGTTTTTTGTTCT 898
Query 974 ATCATCTCGAGGTTTCTTCAGGTTTC 999
||| ||||||||||||||| ||||||
Sbjct 899 ATCGTCTCGAGGTTTCTTCGGGTTTC 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5