BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24610.1
Length=2398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481319 jgi|Araly1|481319|fgenesh2_kg.4__379__AT2G24610.1 3725 0.0
> Ahg481319 jgi|Araly1|481319|fgenesh2_kg.4__379__AT2G24610.1
Length=2342
Score = 3725 bits (2017), Expect = 0.0
Identities = 2187/2269 (96%), Gaps = 11/2269 (0%)
Strand=Plus/Plus
Query 1 GCCTAAACAAGAAGAACAATCTATTCTTGTTTTAGCTTAAAGTTTTTATTGCTACAAACA 60
||||| |||||||||||||||| ||| |||||||||| ||| ||| ||||||||||||
Sbjct 1 GCCTAGACAAGAAGAACAATCT-GTCTAGTTTTAGCTTTAAG-CTTTGTTGCTACAAACA 58
Query 61 ATGGAGTTCAAGAGAGACAATACTGTCAGATTCTATGGAGACGAGAAACAAACCATAGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ATGGAGTTCAAGAGAGACAATACTGTCAGATTCTATGGAGACGAGAAACAAACCATAGAA 118
Query 121 GTAGGAGAGAAGCGAGTACCATTGTTCAAATCAACAACGGCTCCATTTATGAAACAAGAA 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GTAGGAGAGAAGCGTGTACCATTGTTCAAATCAACAACGGCTCCATTTATGAAACAAGAA 178
Query 181 GTACTCCCAAAGAAGAGCAAAACACGTTTGAAAATCCCAAGATTTGGTAGATTCAAAGTG 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 G---TCCCAAAGAAGAGCAAAACACGTTTGAAAATCCCAAGATTTGGTAGATTCAAAGTG 235
Query 241 TTTCCAGAGAATTTCGAGATCGAAAGAGACAAGATTCTAGATCCTGGTGGTGATGCAGTG 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 236 TTTCCAGAGAATTTCGAGATCGAAAGAGATAAGATTCTAGATCCTGGTGGTGATGCAGTG 295
Query 301 CTTCAATGGAACAGAGTTTTCCTCTTCTGGTGTCTCGTTGCACTTTACGTCGACCCTTTG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTTCAATGGAACAGAGTTTTTCTCTTCTGGTGTCTCGTTGCACTTTACGTCGACCCTTTG 355
Query 361 TTCTTCTTTCTTTCTTCAGTCAAACGTATTGGACGATCTTCTTGTATGACTACAGATTTG 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 356 TTCTTCTTTCTTTCTTCAGTCAAACGCATTGGACGATCTTCTTGTATGACTACAGATTTG 415
Query 421 AAGCTTGGAATTGTTATCACTTTCTTCAGAACATTAGCAGATTTGTTCTATGTTTTGCAC 480
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AAGCTTGGAATTGTCATTACTTTCTTCAGAACATTAGCAGATTTGTTCTATGTTTTGCAC 475
Query 481 ATTGTGATCAAATTCAGAACAGCTTATGTTTCTCGTACTTCTAGAGTGTTTGGTCGTGGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATTGTGATCAAATTCAGAACAGCTTATGTTTCTCGTACTTCTAGAGTGTTTGGTCGTGGA 535
Query 541 GAACTTGTGAAAGATCCTAAGTTGATTGCTAGAAGATACTTGAGATCAGATTTCATCGTT 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 536 GAACTTGTGAAAGATCCTAAGTTGATTGCTAGAAGATACTTAAGATCAGATTTCATCGTT 595
Query 601 GACCTCATCGCTTGTTTGCCTCTTCCTCAGATTGTTAGTTGGTTTATCTTGCCATCAATC 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GATCTCATCGCTTGTTTGCCTCTTCCTCAGATTGTTAGTTGGTTTATCTTGCCATCAATC 655
Query 661 AGAAGCTCTCACTCAGATCATACCACAAATGCTCTTGTGCTCATCGTTCTTGTTCAATAC 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 656 AGAAGCTCTCACTCAGATCATACCACAAATGCTCTTGTGCTCATTGTTCTTGTTCAATAC 715
Query 721 ATTCCTCGCCTTTATTTGATTTTTCCTCTAAGCGCTGAGATTATTAAAGCAACCGGAGTT 780
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 716 ATTCCTCGCCTTTATCTGATTTTCCCTCTTAGCGCTGAGATTATTAAAGCAACCGGAGTT 775
Query 781 GTTACAACAACCGCTTGGGCCGGTGCTGCTTACAATCTCCTCCAGTATATGCTTGCTAGC 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTTACAACCACCGCTTGGGCCGGTGCTGCTTACAATCTCCTCCAGTATATGCTTGCTAGC 835
Query 841 CATATTCTTGGCTCGGCGTGGTATCTATTGTCGATAGAACGCCAAGCGACGTGTTGGAAA 900
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CATATTCTAGGTTCTGCGTGGTATCTATTGTCGATAGAACGCCAAGCGACGTGTTGGAAA 895
Query 901 GCAGAATGTCACAAAGAATCAGTGCCGCTACAATGTGTTACGGATTTCTTTGACTGTGGT 960
||||||||||| ||||||| || | | | ||||||||||||||| |||||||||||||||
Sbjct 896 GCAGAATGTCATAAAGAATTAGCGTCTCCACAATGTGTTACGGACTTCTTTGACTGTGGT 955
Query 961 ACATTGCACCGTGATGATCGGAACAAT-TGGCAGAATACAACCGTTGTCTTCAGCAACTG 1019
|||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 956 ACATTGCACCGTGACGATCGGAACA-TCTGGCAGAATACAACCGTTGTCTTCAGCAATTG 1014
Query 1020 TGATCCTTCTAATAATATCCAATTCACATTCGGGATTTTCGCGGATGCTCTCACCAAAAA 1079
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CGATCCTTCGAATAATATCCAATTCACATTCGGGATTTTCGCGGATGCTCTCACCAAAAA 1074
Query 1080 CGTAGTTTCTTCGCCTTTCTTGGAGAAATACTTGTATTGTTTATGGTTTGGACTGCAGAA 1139
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1075 CGTGGTTTCCTCGCCTTTCTTGGAGAAATACTTGTATTGTTTGTGGTTTGGACTGCAGAA 1134
Query 1140 TCTAAGTTCTTATGGACAGAACCTGAGCACAAGTACCTCTGTTCTTGAGACAATGTTTGC 1199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TCTAAGTTCTTATGGACAGAATCTGAGCACAAGTACCTCTGTTCTTGAGACAATGTTTGC 1194
Query 1200 TATCCTTGTCGCTATCTTTGGTCTGGTTTTGTTTGCTCTTTTGATCGGAAACATGCAGAC 1259
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1195 TATCCTTGTGGCTATCTTTGGTCTAGTTTTGTTTGCTCTTTTAATCGGAAACATGCAGAC 1254
Query 1260 GTATTTGCAATCGATCACGGTGAGGCTTGAGGAATGGAGACTGAAGAGAAGAGACACAGA 1319
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1255 GTATTTGCAATCGATCACGGTGAGACTTGAGGAGTGGAGACTTAAGAGAAGAGACACAGA 1314
Query 1320 AGAATGGATGGGACATCGGTTACTGCCGCAGAATCTTAGAGAACGAGTGAGGCGTTTCGT 1379
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1315 AGAATGGATGGGACATCGACTACTGCCACAGAATCTTAGAGAACGAGTGAGGCGTTTCGT 1374
Query 1380 GCAGTATAAATGGCTGGCGACTCGCGGTGTTGACGAGGAAACCATTCTTCATTCATTACC 1439
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1375 GCAGTATAAATGGCTGGCGACTCGAGGTGTTGACGAAGAAACCATTCTTCATTCATTACC 1434
Query 1440 CGCAGATCTCCGTAGAGACATCCAACGCCATCTCTGTCTCGATCTTGTTCGTCGTGTACC 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CGCAGATCTCCGTAGAGACATCCAACGCCATCTCTGTCTCGATCTTGTTCGTCGTGTACC 1494
Query 1500 GCTATTTGCACAAATGGATGATCAGTTACTAGATGCAATATGTGAACGGTTAGCGTCATC 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1495 GCTATTTGCACAAATGGATGATCAGTTACTAGATGCAATATGTGAACGGTTAGCATCATC 1554
Query 1560 TCTAAGCACACAAGGGAACTACATTGTACGTGAAGGTGATCCAGTGACGGAAATGCTCTT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TCTAAGCACACAAGGGAACTACATTGTACGTGAAGGTGATCCAGTGACGGAAATGCTCTT 1614
Query 1620 CATCATCCGTGGAAAACTGGAAAGCTCGACGACTAATGGAGGCAGAACCGGTTTCTTCAA 1679
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 CATTATCCGTGGAAAACTCGAAAGCTCGACGACTAATGGAGGCAGAACCGGTTTCTTCAA 1674
Query 1680 CTCAATCACACTGAGACCAGGAGATTTCTGTGGAGAAGAGCTTCTTGCATGGGCATTGCT 1739
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CTCAATCACACTCAGACCAGGAGATTTCTGTGGAGAAGAGCTTCTTGCATGGGCATTGCT 1734
Query 1740 ACCAAAATCAACAGTAAACTTACCATCCTCAACAAGAACGGTGCGAGCCTTGGAAGAAGT 1799
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1735 TCCAAAATCAACAGTAAACTTACCATCCTCAACAAGAACGGTGCGAGCCTTAGAAGAAGT 1794
Query 1800 TGAAGCCTTTGCTTTACAAGCAGGTGATCTCAAATTCGTGGCTAACCAATTCAGGCGTTT 1859
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1795 TGAAGCCTTTGCTTTACAAGCAGGTGATCTCAAATTTGTGGCTAACCAATTCAGGCGTCT 1854
Query 1860 ACATAGCAAGAAGCTGCAACATACATTCCGTTATTACTCCCATCAGTGGAGAACTTGGGC 1919
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1855 ACATAGCAAGAAGCTGCAACACACATTCCGTTATTACTCTCATCAGTGGAGAACTTGGGC 1914
Query 1920 TGCTTGTTTTGTACAAGTCGCTTGGAGACGGTATAAGAGAAAGAAGTTGGCTAAGAGTCT 1979
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1915 TGCTTGTTTTGTACAAGTCGCGTGGAGACGGTATAAGAGAAAGAAGTTGGCTAAGAGTCT 1974
Query 1980 TAGCTTGGCTGAGTCATTCTCTTCTTATGATGAAGAAGAAGCTGTTGCGGTTGCTGCAAC 2039
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1975 TAGCTTGGCTGAGTCATTCTCATCGTATGATGAAGAAGAAGCTGTGGCGGTTGCTGCAAC 2034
Query 2040 CGAGGAAATGAGTCATGAAGGAGAAGCACAAAGCGGCGCTAAAGCTCGCCATCATACTTC 2099
||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2035 TGAGGAGATGAGTCAAGAAGGAGGAGCACAAAGCGGCGCTAAAGCTCGCCATCATACTTC 2094
Query 2100 TAATGTGAAACCGCATTTCGCTGCAACCATACTTGCTTCGAGGTTTGCTAAGAACACAAG 2159
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2095 TAATGTGAAACCGCATTTTGCTGCAACAATACTTGCTTCGAGGTTTGCTAAGAACACAAG 2154
Query 2160 AAGGACGGCTCATAAGCTCAAGGATGTCGAAATACCGATGCTGCCTAAACCGGATGAGCC 2219
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 GAGGACAGCTCATAAGCTCAAGGATGTCGAAATACCGATGCTGCCTAAACCGGATGAGCC 2214
Query 2220 GGATTTCTCAGTGGATGATTGATT--T--GATTAACCGTTTTAATATAA 2264
|||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct 2215 GGATTTCTCAGTGGATGATTGATTGATTTGATTAACCGTTTTGATATAA 2263
Score = 102 bits (55), Expect = 1e-20
Identities = 77/86 (90%), Gaps = 7/86 (8%)
Strand=Plus/Plus
Query 2294 AAAAATCAGTTTGTTAAAACTCaaaaaaa-CTTGGCTGCTTGAAGTAGTAGTAATCCACA 2352
||||||||||||||||||| ||||||||| ||| ||||||||||||| | | || |||
Sbjct 2263 AAAAATCAGTTTGTTAAAATTCAAAAAAAACTTTGCTGCTTGAAGTA--A-T--TC-ACA 2316
Query 2353 AAAATGTTCAGCAGTTTGTATAAATA 2378
||||||||||||||||||||||||||
Sbjct 2317 AAAATGTTCAGCAGTTTGTATAAATA 2342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90350061140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5