BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24615.1
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320269 jgi|Araly1|320269|fgenesh1_pm.C_scaffold_4000326 296 5e-80
> Ahg320269 jgi|Araly1|320269|fgenesh1_pm.C_scaffold_4000326
Length=261
Score = 296 bits (160), Expect = 5e-80
Identities = 220/248 (89%), Gaps = 7/248 (3%)
Strand=Plus/Plus
Query 1 ATGGCTAGCAGTAAAAATGGTACCGTGCTCT-TCGTCAGTTTGATGATT-TTGTTATTAA 58
|||||||||||| ||||||| |||| | | |||||||||| |||||| || |||||||
Sbjct 1 ATGGCTAGCAGTGTAAATGGTGTCGTG-TTTGTCGTCAGTTTAATGATTGTT-TTATTAA 58
Query 59 TTTCGACAGGAGTAAAAGCTTATTGTGAGAGAGTACGAAGCAGGTCAGCACCACATGACA 118
|||||||| | || || |||||||||||| | |||||||||||||||||||||||||||
Sbjct 59 TTTCGACA-G-TTACAA-CTTATTGTGAGAAAATACGAAGCAGGTCAGCACCACATGACA 115
Query 119 TTTGTAAGaaaaaaaaTGGCAATGCGGTGTGCAAAGAGAAGTGTTGGACAATAGAAAAAT 178
|||||||||||||||||||||||||| |||||||||||| |||||||| || ||||| |
Sbjct 116 TTTGTAAGAAAAAAAATGGCAATGCGTTGTGCAAAGAGACGTGTTGGATAAGAGAAACTT 175
Query 179 ATCAAAATGGACGATGTCTAATACTTCCAAAGACGACAAAATTGGATTGCTACTGCTACC 238
|||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 176 ATCAGAATGGAAGATGTCTAATTCTTCCAAAGACGACAAAATTAGATTGCTACTGCTACC 235
Query 239 ATTTTGAC 246
|||| |||
Sbjct 236 ATTTCGAC 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8859676552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5