BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24617.1
Length=315
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899831 jgi|Araly1|899831|Al_scaffold_0004_481 394 2e-109
> Ahg899831 jgi|Araly1|899831|Al_scaffold_0004_481
Length=1455
Score = 394 bits (213), Expect = 2e-109
Identities = 268/293 (91%), Gaps = 9/293 (3%)
Strand=Plus/Minus
Query 1 ATGGCATTCCTCCAACCCAATACTCCTGTCCACAATAGACTTTGTAATATCTGGCAACTT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 288 ATGGCATTCCTTCAACCCAATACTCCTGTCCACAATAGACTTTGTAATATCAGGCAACTT 229
Query 61 CATTGTCCTGAGCTGCTCAAACCCATCTGTAGAGCAGTTCAACGGTGTCTTCCTCGTACA 120
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 228 CATTGTCCTGAGCTGCTCAAACCCATCCCTAGAGCAGTTCAACGGTGTCTTCCTCGTACA 169
Query 121 ACCACCTGTCCAGTCGTGGAAATCCCATGCTTCTT-GATCTCTCGCCTCAAACCCATG-- 177
|||||||||||||||||| |||||||||||||||| | ||||||| || |||||||||
Sbjct 168 ACCACCTGTCCAGTCGTGCAAATCCCATGCTTCTTTG-TCTCTCGGCTGAAACCCATGGA 110
Query 178 TGCAAACACAGTTTGGTGATGTGTCCATGTCACACAGACCATAAGCTCCACATAC-ATTG 236
|||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 109 TGCAAACACAGTTTGGTGATGTGTTTGTGTCACACAGACCATAAGCTCCACAT-CTATTG 51
Query 237 TATGAACCGCATGTATCATGTGGTAAAACACGATCCCTTAGTCGTTTACACAT 289
||| |||||||||||||| ||||||||| || |||| | |||||| |||||
Sbjct 50 TATAAACCGCATGTATCACGTGGTAAAAGACTATCCA--A-TCGTTTCCACAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11103276399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5