BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24620.1 Length=474 Score E Sequences producing significant alignments: (Bits) Value Ahg481321 jgi|Araly1|481321|fgenesh2_kg.4__381__AT2G24620.1 664 0.0 > Ahg481321 jgi|Araly1|481321|fgenesh2_kg.4__381__AT2G24620.1 Length=460 Score = 664 bits (359), Expect = 0.0 Identities = 431/465 (93%), Gaps = 7/465 (2%) Strand=Plus/Plus Query 1 ATGAAATTTGGCTGGGATGCCAAATCAAACATAAATAGAGTTTTGAAATCTTGGAGAAG- 59 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 ATGAAATTTGGCTGGGATGCCAAATCAAACATCAATAGAGTTTTGAAATCTTGGAGAAGC 60 Query 60 CTTTGATGATCCTTCTCCCGGGGAATACACATACGGAGTGGAACGTCATGAGCTCGCGCA 119 ||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 CTTAG-TGATCCTTCTCCCGGGGAATACACATACGGAGTTGAACGTCATGAGCTCGCGCA 119 Query 120 AAGTTTCATTCGGAAGAAAGGTGTGTCAACATTCCGGAGTGACCCATGGAAGACAAAAAA 179 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 120 AAGTTTCATTCGGAAGAAAGGTGTGCCAACATTCCGGAGTGACCCATGGAAGACAAAAAA 179 Query 180 TGACGTAGAATATGAAAGTGGAAATTTAACCTACACGACATACCGCATTACCGCGACCGA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 180 TGACGTAGAATATGAAAGTGGAAATTTAACCTACACGACATACCGCATTACCGTGACCAA 239 Query 240 AGAGAAAGCCACCTATTTCTTCAGTATCACGAATGAATCCTTCTTCTCAATATTGAGATT 299 |||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 240 AGAGGAGGTCACCTATTTCTTCAGTATCACCAATGAATCCTTCTTCTCAATATTGAGAAT 299 Query 300 GTCCTATACCGGTGTGTTGCAGCGGTCTACGTGGGTTCCAAAACCACAACAAATGTGTAA 359 ||| |||| ||| |||||| || ||| ||||||| |||||||||||||||||||||| || Sbjct 300 GTCTTATAGCGGCGTGTTGAAGAGGTATACGTGGATTCCAAAACCACAACAAATGTGGAA 359 Query 360 ACGACTAAGGGATCGTGTTTTACCACATGATACATGCGGTTCATACAAT-GTATGTGGAG 418 |||| | || || || ||||||||| |||||||||||||| ||||||| | |||||||| Sbjct 360 ACGATT--GG-ATAGTCTTTTACCACGTGATACATGCGGTTTATACAATAG-ATGTGGAG 415 Query 419 CTTATGGTCTGTGTGACATGGACACATCACCAAACTGTGTTTGCA 463 |||||||||||||||||| |||||||||||||||||||||||| Sbjct 416 CTTATGGTCTGTGTGACACAAACACATCACCAAACTGTGTTTGCA 460 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17170015050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5