BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G24620.1

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481321 jgi|Araly1|481321|fgenesh2_kg.4__381__AT2G24620.1          664    0.0  


> Ahg481321 jgi|Araly1|481321|fgenesh2_kg.4__381__AT2G24620.1
Length=460

 Score =  664 bits (359),  Expect = 0.0
 Identities = 431/465 (93%), Gaps = 7/465 (2%)
 Strand=Plus/Plus

Query  1    ATGAAATTTGGCTGGGATGCCAAATCAAACATAAATAGAGTTTTGAAATCTTGGAGAAG-  59
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  1    ATGAAATTTGGCTGGGATGCCAAATCAAACATCAATAGAGTTTTGAAATCTTGGAGAAGC  60

Query  60   CTTTGATGATCCTTCTCCCGGGGAATACACATACGGAGTGGAACGTCATGAGCTCGCGCA  119
            ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  61   CTTAG-TGATCCTTCTCCCGGGGAATACACATACGGAGTTGAACGTCATGAGCTCGCGCA  119

Query  120  AAGTTTCATTCGGAAGAAAGGTGTGTCAACATTCCGGAGTGACCCATGGAAGACAAAAAA  179
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  120  AAGTTTCATTCGGAAGAAAGGTGTGCCAACATTCCGGAGTGACCCATGGAAGACAAAAAA  179

Query  180  TGACGTAGAATATGAAAGTGGAAATTTAACCTACACGACATACCGCATTACCGCGACCGA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct  180  TGACGTAGAATATGAAAGTGGAAATTTAACCTACACGACATACCGCATTACCGTGACCAA  239

Query  240  AGAGAAAGCCACCTATTTCTTCAGTATCACGAATGAATCCTTCTTCTCAATATTGAGATT  299
            |||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct  240  AGAGGAGGTCACCTATTTCTTCAGTATCACCAATGAATCCTTCTTCTCAATATTGAGAAT  299

Query  300  GTCCTATACCGGTGTGTTGCAGCGGTCTACGTGGGTTCCAAAACCACAACAAATGTGTAA  359
            ||| |||| ||| |||||| || ||| ||||||| |||||||||||||||||||||| ||
Sbjct  300  GTCTTATAGCGGCGTGTTGAAGAGGTATACGTGGATTCCAAAACCACAACAAATGTGGAA  359

Query  360  ACGACTAAGGGATCGTGTTTTACCACATGATACATGCGGTTCATACAAT-GTATGTGGAG  418
            |||| |  || || || ||||||||| |||||||||||||| ||||||| | ||||||||
Sbjct  360  ACGATT--GG-ATAGTCTTTTACCACGTGATACATGCGGTTTATACAATAG-ATGTGGAG  415

Query  419  CTTATGGTCTGTGTGACATGGACACATCACCAAACTGTGTTTGCA  463
            ||||||||||||||||||   ||||||||||||||||||||||||
Sbjct  416  CTTATGGTCTGTGTGACACAAACACATCACCAAACTGTGTTTGCA  460



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17170015050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5