BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G24640.1

Length=2535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481323 jgi|Araly1|481323|fgenesh2_kg.4__383__AT2G24640.1         3133    0.0  
  Ahg491573 jgi|Araly1|491573|fgenesh2_kg.7__1006__AT4G31670.1        1101    0.0  


> Ahg481323 jgi|Araly1|481323|fgenesh2_kg.4__383__AT2G24640.1
Length=2168

 Score = 3133 bits (1696),  Expect = 0.0
 Identities = 1879/1966 (96%), Gaps = 17/1966 (1%)
 Strand=Plus/Plus

Query  87    GAAGATCGATGTTCGAGAGGGAATTAGATGCATGAAGTTGGATTATTTGTGGATCTGAAT  146
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  35    GAAGATCGATGTTCGAGAGGGAATTAGATGCATGAAGTTGGATTATTTGTGGATCTGAAT  94

Query  147   TCCTTCACGCAGCTTATATTGACGCTCTTCTTTGTCTCTATCGGTCTTCTCTACTTTGTT  206
             | ||||||||||||||| |||||| | |||||| |||| |||||||| ||||||||||||
Sbjct  95    TTCTTCACGCAGCTTATCTTGACGTTATTCTTTCTCTCAATCGGTCTCCTCTACTTTGTT  154

Query  207   AAAAGAACGGCAGCCAAGTACTTCGAGGTCGGTGGTGGCTCCGGTGGTTTCGATAGAGAC  266
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  155   AAAAGAACGGCAGCCAAGTACTTCGAGGTCGGTGGTGGCTCCGGTGGTTTCGATAGAGAC  214

Query  267   CATCGCCGAGATTTCATGGTTTCCGACACGGCTGAATGTTCTGTCTGTGGGAAGGCTACT  326
             ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | ||
Sbjct  215   CATCGCCGAGATTTCATGGTTCCCGACACGGTTGAATGTTCTGTCTGTGGGAAGGTTTCT  274

Query  327   ACCAAAAAGTGCTCTCGCTGCAAATCTGTGAGATACTGCTCTGCGGCA-TGCCAAACGTC  385
             ||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||||||
Sbjct  275   ACCAAGAAGTGCTCTCGTTGCAAATCTGTGAGATACTGCTCTGCGG-ATTGCCAAACGTC  333

Query  386   AGATTGGAAATCAGGACATAAACTAAAATGCAAGGGGTTTCGGAGTACTGACTCATCACC  445
             ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  334   AGATTGGAAGTCAGGACATAAACTAAAATGCAAGGTGTTTCGGAGTACTGACTCATCACC  393

Query  446   AGTGAGAAGAGATGATATCGATTTCGAAGCTTCTCTGTTTGGGAATA-GATCTGCTTCTA  504
              ||| ||| |||||||||||||| | ||||||||||||||||||||| | ||||||||||
Sbjct  394   GGTGGGAAAAGATGATATCGATTACAAAGCTTCTCTGTTTGGGAATATG-TCTGCTTCTA  452

Query  505   AGAAGACT-AGGATTGCATTGGTTCCTCAACAGAGCCAAAGCAAAGCTACCCTCAAGCCA  563
             |||||| | ||| |||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct  453   AGAAGAGTAAGG-TTGCATTGGTTCCTCAACTGAGCCAAAGCAAGGCTACCATCAAGCCA  511

Query  564   ACAGATGTTCTTTTCCCATACGAAAGTTTTGTTAGATATTATAACTGGGACAGACCAATA  623
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  512   ACAGATGTTCTTTTCCCATACGAAAGTTTTGTTAGATATTATAACTGGGACAGACCAATA  571

Query  624   ATGGCTCCTTGTGGGCTCACCAATTGTGGAAACAGTTGTTTCGCTAATGTGGTTCTACAA  683
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  572   ATGGCTCCTTGTGGGCTCACCAATTGTGGAAACAGTTGTTTCGCTAATGTGGTTCTACAA  631

Query  684   TGCCTTTCCTGGACACGCCCTCTTGTTGCTTACCTTCTGGAGAGAGGCCACAAAAGAGAA  743
             ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||
Sbjct  632   TGCCTTTCCTGGACACGCCCTCTTGTTGCGTATCTTCTGGAGAGAGGCCACAAAAGACAA  691

Query  744   TGTAGGCGAAATGATTGGTGCTTCTTATGCGAATTTGAAAATCATCTTGACAGAGCAAAC  803
             |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  692   TGTAGGCGAAATGATTGGTGCTTCTTCTGTGAATTTGAAAATCATCTTGACAGAGCAAAC  751

Query  804   TATAGCCGGTTTCCTTTTTCACCAATGAACATTATCTCGCGGCTGCCTAATATTGGTGGA  863
              | ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||
Sbjct  752   CAAAGCCGGTTTCCATTTTCACCAATGAACATTATTTCACGGCTGCCGAATATTGGTGGA  811

Query  864   AATCTTGGGTATGGGAGACAGGAGGATGCTCATGAGTTGATGAGGTTTGCAATTGATATG  923
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  812   AATCTTGGGTATGGAAGACAGGAGGATGCTCATGAGTTGATGAGGTTTGCAATTGATATG  871

Query  924   ATGCAATCTGTTTGCCTCGACGAATTTGGTGGAGAAAAAGTGGTGCCTCCTCGCGCCCAA  983
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  872   ATGCAATCTGTTTGCCTCGACGAATTTGGTGGAGAGAAAGTGGTGCCTCCTCGCGCCCAA  931

Query  984   GAGACAACACTTATTCAATATATATTTGGTGGTCTCCTTCAGTCACAGGTCCAGTGTACT  1043
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  932   GAGACAACACTTATTCAATATATATTTGGTGGTCTCCTTCAGTCACAGGTCCAGTGTACT  991

Query  1044  GCTTGCAGTAATGTTTCTGACCAATATGAAAATATGATGGATTTAACTGTTGAGATCCAT  1103
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  992   GCTTGCAGTAATGTTTCTGACCAATATGAAAATATGATGGATTTAACTGTTGAGATACAT  1051

Query  1104  GGGGATGCGGTATCATTGGAGGAATGTCTCGATCAGTTTACAGCTAAAGAATGGCTTCAG  1163
             |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  1052  GGGGATGCGGTATCATTGGAGGAATGTCTCGATCAGTTCACAGCTAAAGAGTGGCTTCAG  1111

Query  1164  GGAGATAACTTATACAAATGTGATAGATGTGATGACTATGTGAAAGCATGCAAGCGCCTT  1223
             || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1112  GGGGATAACTTATACAAATGTGATAGATGTGATGACTATGTGAAGGCATGCAAGCGCCTT  1171

Query  1224  TCAATTCGTTGTGCTCCAAATATTCTTACAATTGCCTTAAAAAGATTCCAGGGTGGGAGA  1283
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1172  TCAATTCGTTGTGCTCCAAATATTCTTACAATTGCCTTAAAAAGATTCCAGGGTGGGAGA  1231

Query  1284  TTCGGTAAACTGAACAAAAGAATTAGTTTTCCTGAGACATTTGATCTAGGCCCTTACATG  1343
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1232  TTCGGTAAACTGAACAAAAGAATTAGTTTTCCCGAGACATTTGATCTAGGCCCTTACATG  1291

Query  1344  AGCGGTGGAGGAGAAGGATCAGATGTATACAAACTCTACGCTGTGATTGTTCATCTAGAT  1403
             ||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct  1292  AGCAGTGGAGTAGAAGGATCAGATGTATACAAACTCTATGCTGTGATTGTCCATTTAGAT  1351

Query  1404  ATGTTGAATGCTTCATTTTTCGGCCATTACATATGCTATGTCAAGGACTTCCGTGGAAAC  1463
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1352  ATGTTGAATGCCTCATTTTTCGGCCATTACATATGCTATGTCAAGGACTTCCGTGGAAAC  1411

Query  1464  TGGTATAGAATAGACGATTCTGAGGTGGAAAAGGTTGAACTAGAAGATGTCCTTTCTCAA  1523
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1412  TGGTATAGAATAGACGATTCTGAGGTGGAAAAAGTTGAACTAGAAGATGTCCTTTCTCAA  1471

Query  1524  CGAGCATACATGCTCCTCTACAGCAGGGTTCAGCCCAGACCATCAAATCTTAGATCCGAA  1583
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1472  CGAGCATACATGCTCCTCTACAGCAGGGTTCAGCCCAGACCATCAAATCTTAGATCCGAA  1531

Query  1584  GAAAGTCAAGATGAGAAGAAAACAGATACATTGAACACAGAATCTAACCAAGATGGCTCT  1643
             ||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct  1532  GAAGGTCAAGATGAAAAGAAAACAGATACATTGAACACAGAATCTAGCCAAGATGACTCT  1591

Query  1644  GTTGAGAGTTCCGGGGTGGGAACAAATGACACAAGTGTGTCCTCGCTGTGTAACGGCATC  1703
             | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1592  GCTGAGAGTTCCGGGGTGGGAGCAAATGACACAAGTGTGTCCTCGCTGTGTAACGGCATC  1651

Query  1704  ATCTCACATTCAGAAGACCCTGAATACGAAAAAGAATCATCATTGTC---A--G-CA---  1754
             ||||||||||||||||||||||||| |||||||||||||||||||||   |  | ||   
Sbjct  1652  ATCTCACATTCAGAAGACCCTGAATGCGAAAAAGAATCATCATTGTCGTCAATGTCAGCA  1711

Query  1755  TCCGTACCAGTCTCTGAAGAAGGAAAGGAAGTTGACGTAAAGGTTGATACAGTAGATTCT  1814
             |||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  1712  TCCGTATCAGTCTCTGAAGAAGGAAAGGAAGTTGACGCAAGGGTTGATACAGTAGATTCT  1771

Query  1815  GAATCAAACCGTTCTATTGACATGGAACATGATTCTGGAACAGATCATCAAGAAGAAGAA  1874
             |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct  1772  GAATCAAACCCTTCTATTGACATGGAACATGATTCCGGAACAGATCATCAAGAAGAAGCA  1831

Query  1875  GCAAATGGGAAAGAAGATCCAACGGTTGAAAATCTGGCTGTTGATTCTTCTTGTTTGGAC  1934
             ||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||
Sbjct  1832  GCAAATGGGAAAGAAGATCCAGCGGTTGAAAAACTTGCTGTTGATTCTTCTTGTTCGGAC  1891

Query  1935  ATTACTACTCCATCTCCATCTGCTGCTACAG-AGTTCATACCTCAGGAGAACGAACGTTC  1993
             |||||||||| |||||||||||||||||||| | |||||||||||||||||||||| |||
Sbjct  1892  ATTACTACTCTATCTCCATCTGCTGCTACAGTA-TTCATACCTCAGGAGAACGAACATTC  1950

Query  1994  AGACACCGAGTCCAAACCTCTGGAGAAAGAACATTCAGACACCGAG  2039
             |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1951  AGACACCGAGTCCAAACCCCTGGAGAAAGAACATTCAGACACCGAG  1996


 Score =  351 bits (190),  Expect = 1e-95
 Identities = 220/234 (94%), Gaps = 4/234 (2%)
 Strand=Plus/Plus

Query  2054  GGAGAAAGAACATTTAGACAGCGAGTCCAAACCCCTGGAGAAAGAACATTCAGACACCGA  2113
             |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1936  GGAGAACGAACATTCAGACACCGAGTCCAAACCCCTGGAGAAAGAACATTCAGACACCGA  1995

Query  2114  GATGATCGATGCTCAATGAT-T-CTAAAGGGATGGTGGTGGAATCACAAA-CATTTTTCA  2170
             |||||||||||||||||||| | | ||| ||||||||||||||||||||| |||||||||
Sbjct  1996  GATGATCGATGCTCAATGATATTCCAAAAGGATGGTGGTGGAATCACAAAACATTTTTCA  2055

Query  2171  TGGCTCTTGAAAATCAACAAGGGCGCTTCTAACTTAACAATAATGCTGCaaaaaaaTTGC  2230
             ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct  2056  TGGCTCTTGAAAATCGACAAGGGAGCTTCTAACTTAACAATAATGCTGCTAAAAA-TTGC  2114

Query  2231  TTTAGACACTGCAATTTCTGGTGTCTGAAGGATATATAGAATTTGTTGGATCCT  2284
             ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  2115  TTTAGACACTGCAATTTCTGGTGCCTGAAGGATATATAGAAATTGTTGGATCCT  2168


 Score = 67.6 bits (36),  Expect = 4e-10
 Identities = 36/36 (100%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  35  ATTCTCTTTGGCATCTCCGAATCGAATCTGAGAAGA  70
           ||||||||||||||||||||||||||||||||||||
Sbjct  1   ATTCTCTTTGGCATCTCCGAATCGAATCTGAGAAGA  36


> Ahg491573 jgi|Araly1|491573|fgenesh2_kg.7__1006__AT4G31670.1
Length=2013

 Score = 1101 bits (596),  Expect = 0.0
 Identities = 1101/1336 (82%), Gaps = 70/1336 (5%)
 Strand=Plus/Plus

Query  306   TCTGTCTGTGGGAAGGCTACTACCAA-AAAGTGCTCTCGCTGCAAATCTGTGAGATACTG  364
             ||||||||||||||   | | ||||| ||| ||||| ||||||||||| || ||||||||
Sbjct  212   TCTGTCTGTGGGAATTTTTCCACCAAGAAA-TGCTCCCGCTGCAAATCCGTTAGATACTG  270

Query  365   CTCTGCGGCA-TGCCAAACGTCAGATTGGAAATCAGGACAT-AAACTAAAATGCAAGGGG  422
             ||| || | | ||||||| |||||| ||||  || || ||| |||  ||| ||||| || 
Sbjct  271   CTCAGCAG-AGTGCCAAAGGTCAGACTGGAGCTCGGGTCATCAAA-GAAAGTGCAA-GGA  327

Query  423   TT-TCGGAGTACTGAC-TCATCACCA-GTG-AGAAGAGAT-G-ATATCGATTTCGA-AGC  475
             || | ||| |||| || | | |||||  || | |||| || |  ||  |  ||| | |||
Sbjct  328   TTATGGGATTACT-ACATTAACACCATCTGCA-AAGA-ATGGCTTA-AG-GTTC-AGAGC  381

Query  476   TTCTCTGTTTGGGAATAGATCTGCTTCTAAGAAGACTAGGATTGCATTG-GTTCCTCAAC  534
             ||||| ||| ||| |||| |||||||||    | | |   |||||| ||  ||||  |||
Sbjct  382   TTCTCCGTTCGGGGATAGTTCTGCTTCT----A-A-T---ATTGCACTGATTTCC-GAAC  431

Query  535   AGAG-CCAAAGCAA-AGCTACCCTCAAGCCAACAGATGTTCTTTTCCCATACGAAAG-TT  591
              | | ||||| ||| || ||  |||||||||| ||| |||||||| ||||| | |||  |
Sbjct  432   -GGGCCCAAAACAAGAG-TAGTCTCAAGCCAAGAGAAGTTCTTTTTCCATATG-AAGAAT  488

Query  592   TTGTTAGA-TATTATAACTGGGACAGA-CCAATAA-TGGCTCCTTGTGGGCTCACCAATT  648
             |||||  | |||| ||||||||||| | || | || ||||||| ||||||||||  ||||
Sbjct  489   TTGTT-CACTATTTTAACTGGGACA-ATCC-AGAATTGGCTCCCTGTGGGCTCATGAATT  545

Query  649   GTGGAAACAGTTGTTTCGCTAATGTGGTTCTACAATGCCTTTCCTGGACACGCCCTCTTG  708
             ||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct  546   GTGGAAATAGTTGTTTCGCCAATGTGATTCTACAATGCCTTTCCTGGACACGTCCTCTTG  605

Query  709   TTGCTTACCTTCTGGAGAGAGGCCACAAAAGAGAATGTAGGCGA-AATGATTGGTGCTTC  767
             |||| || || ||||||| ||||||||| |||||||||| || | || ||||||||||||
Sbjct  606   TTGCATATCTGCTGGAGAAAGGCCACAAGAGAGAATGTATGC-ACAACGATTGGTGCTTC  664

Query  768   TTATGCGAATTTGAAAATCATCTTGACAGAGCAAACT-ATAGCCGGTTTCCTTTTTCACC  826
             || || |||||| |||  ||| |||| |||||  | | | || ||||| |||||||||||
Sbjct  665   TTCTGTGAATTTCAAACCCATGTTGAGAGAGC-GAGTCAAAGTCGGTTCCCTTTTTCACC  723

Query  827   AATGAACATTATCTCGCGGCTGCCTAATATTGGTGGAAATCTTGGGTATGGGAGACAGGA  886
             |||||||||||| || ||| |  ||||||||||||||| |||||||||||| ||||||||
Sbjct  724   AATGAACATTATTTCACGGTTAACTAATATTGGTGGAACTCTTGGGTATGGAAGACAGGA  783

Query  887   GGATGCTCATGAGTTGATGAGGTTTGCAATTGATATGATGCAATCTGTTTGCCTCGACGA  946
             ||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| || ||
Sbjct  784   GGATGCTCATGAGTTCATGAGGTATGCGATTGATATGATGCAGTCTGTTTGCCTTGAAGA  843

Query  947   ATTTGGTGGAGAAAAAGTGGTGCCTCCTCGCGCCCAAGAGACAACACTTATTCAATATAT  1006
             ||| |||||||||||| | |||||||||||  | ||||| |||||||||||||| |||||
Sbjct  844   ATTCGGTGGAGAAAAAATAGTGCCTCCTCGTTCTCAAGAAACAACACTTATTCAGTATAT  903

Query  1007  ATTTGGTGGTCTCCTTCAGTCACAGGTCCAGTGTACTGCTTGCAGTAATGTTTCTGACCA  1066
             |||||| ||||| || || |||||||| |||||||||| ||||| | |||||||||||||
Sbjct  904   ATTTGGAGGTCTTCTCCAATCACAGGTTCAGTGTACTGTTTGCAATCATGTTTCTGACCA  963

Query  1067  ATATGAAAATATGATGGATTTAA-CTGTTGAGATCCATGGGGATGCGGTATCATTGGAGG  1125
             ||||||||||||||||||| ||| | |||||||| |||||||||||||| || |||||||
Sbjct  964   ATATGAAAATATGATGGATCTAATC-GTTGAGATGCATGGGGATGCGGTGTCTTTGGAGG  1022

Query  1126  AATGTCTCGATCAGTTTACAGCTAAAGAATGGCTTCAGGGAGATAACTTATACAAATGTG  1185
             ||||||| ||||| ||||||||  |||| |||||||| ||||||||| | ||||||||||
Sbjct  1023  AATGTCTTGATCAATTTACAGCCGAAGAGTGGCTTCATGGAGATAACATGTACAAATGTG  1082

Query  1186  ATAGATGT-GATGACTATGTGAAAG-CATGCAAGCGCCTTTCAATTCGTTGTGCTCCAAA  1243
             |||| ||| | ||||||||| |||| |||| ||||| ||| | ||| |  | ||||||||
Sbjct  1083  ATAGGTGTAG-TGACTATGT-AAAGGCATGTAAGCGTCTTACGATTTGGCGCGCTCCAAA  1140

Query  1244  TATTCTTACAATTGCCTTAAAAAGAT-TCCAGGGTGGGAGATTCGGTAAACTGAACAAAA  1302
             ||||||||| |||||||||||||||| || |||| || |||| ||| |||||||||||||
Sbjct  1141  TATTCTTACGATTGCCTTAAAAAGATATC-AGGGAGGAAGATACGGAAAACTGAACAAAA  1199

Query  1303  GAATTAGTTTTCCTGAGACATTTGATCT-AGGCCCTTACATGAGCGGTGGAGGAGAAGGA  1361
             |||| ||||||||||||||||| ||||| |  || ||||||||| |  || |||||||||
Sbjct  1200  GAATAAGTTTTCCTGAGACATTGGATCTTAATCC-TTACATGAGTGAAGGCGGAGAAGGA  1258

Query  1362  TCAGATGTATACAAACTCTACGCTGTGATTGTTCATCTAGATATGTTGAATGCTTCATTT  1421
             ||||||||||| |||||||| || |||||||| ||| |||||||| ||||||| ||||| 
Sbjct  1259  TCAGATGTATATAAACTCTATGCAGTGATTGTCCATTTAGATATGCTGAATGCATCATTC  1318

Query  1422  TTCGGCCATTACATATGCTATGTCAAGGACTTCCGTGGAAACTGGTATAGAATAGACGAT  1481
             ||||||||||||||||||||  | ||||| ||  | |||||||||||||||||||| |||
Sbjct  1319  TTCGGCCATTACATATGCTACATTAAGGATTTTTGCGGAAACTGGTATAGAATAGATGAT  1378

Query  1482  TCTGAGGTGGAAAAG-GTTGAACTAGAAGATGTCCTTTCTCAACGAGCATACATGCTCCT  1540
             || ||| | |||| | |||||| |||||||||| ||||||||| |||| || ||||||||
Sbjct  1379  TCCGAGATAGAAA-GTGTTGAATTAGAAGATGTTCTTTCTCAAAGAGCTTATATGCTCCT  1437

Query  1541  CTACAGCAGGGTTCA-GCCCAGAC--CATCAA-AT--CTTAGATCCGAAGAAAGT-CAAG  1593
             |||||||||| |||| || | | |  |||||  ||  ||||||||  | ||| || ||||
Sbjct  1438  CTACAGCAGGATTCAAGCTCGGTCGTCATCATCATGTCTTAGATC--A-GAA-GTTCAAG  1493

Query  1594  ATGAGAAGAAAACAGA  1609
             | ||||||||||||||
Sbjct  1494  ACGAGAAGAAAACAGA  1509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 95568424705


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5