BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24645.1
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481325 jgi|Araly1|481325|fgenesh2_kg.4__385__AT2G24650.1 1897 0.0
Ahg932575 jgi|Araly1|932575|scaffold_400563.1 691 0.0
Ahg932560 jgi|Araly1|932560|scaffold_400548.1 682 0.0
Ahg932960 jgi|Araly1|932960|scaffold_400948.1 527 1e-148
Ahg932837 jgi|Araly1|932837|scaffold_400825.1 294 1e-78
Ahg932846 jgi|Araly1|932846|scaffold_400834.1 207 2e-52
> Ahg481325 jgi|Araly1|481325|fgenesh2_kg.4__385__AT2G24650.1
Length=4830
Score = 1897 bits (1027), Expect = 0.0
Identities = 1295/1422 (91%), Gaps = 28/1422 (2%)
Strand=Plus/Plus
Query 202 AATACCTGTAGCCTTCTTCTTGAAGAATATAGAAGGAAGATATGAGCAGAAGACGGCGGA 261
||| ||||||| ||||||||||||| |||||||||||||| |||| || |||||||| ||
Sbjct 3417 AATTCCTGTAGTCTTCTTCTTGAAGCATATAGAAGGAAGAGATGACCAAAAGACGGCAGA 3476
Query 262 GCTGAGATCAGATGCGTCAAAGATAACTTGGGAAGTGAAGATAGATGGACAGAGACTCAC 321
||| ||||| || ||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 3477 GCTAAGATCCGACGCGTCGAAGATAACTTGGAAAGTGAAGATAGATGGACAGAGACTCAC 3536
Query 322 TGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCGAATCGGTGACATTGTTGTTTT 381
|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||
Sbjct 3537 TGACGGTTGGAAAGAGTTTGCTTTAGCACATGATCTTCGAATCGGTGACATTGTCATTTT 3596
Query 382 CAGACAAGAGAGAGA-TATGTCTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTGAGA 440
|||||||||||| || | |||||||||| || ||| | || |||||||||||||||||||
Sbjct 3597 CAGACAAGAGAGTGACT-TGTCTTTCCATGTGACACTATTAGGACCTAGTTGTTGTGAGA 3655
Query 441 TCCAATATGGTTCGTGTTCAGACGAGGAGAGAAACCTCGAGAAGAAGAAGAATCCAAATG 500
| |||||||||||||||| |||||| |||| || |||||||||||||||||||||||||
Sbjct 3656 TTCAATATGGTTCGTGTTTAGACGAAGAGACCAATCTCGAGAAGAAGAAGAATCCAAATG 3715
Query 501 GAGAAGCAAAGTCTTCTTCACTAGATC-CTTCTTGTTTT-TCGGCTAATGTGGCGCCTTC 558
|||||||| || ||||||||||||||| || |||||||| | |||||| || ||||||||
Sbjct 3716 GAGAAGCAGAGACTTCTTCACTAGATCGCT-CTTGTTTTGT-GGCTAAAGTCGCGCCTTC 3773
Query 559 GAGTCTACGTTATGACTTAATGCTTTTTCCAATGGG-TTTTGTGAGGGAAAATGGTGTAG 617
||||||| ||||||||| ||||| | |||||| || ||||||||| |||||||||||||
Sbjct 3774 GAGTCTAAGTTATGACTCAATGCATCTTCCAA-GGCCTTTTGTGAGAGAAAATGGTGTAG 3832
Query 618 TC---GGATCTGGAAAGATTGTTCTGATGAATGAAAAGGGCAGATCATGGAATTTTAACT 674
|| ||||||||| ||||||||||||||||||||||||||||||||||||| || || |
Sbjct 3833 TCACTGGATCTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGATCATGGAAGTTAAAAT 3892
Query 675 TGAGACAAAAGCCATCATGCGGAACAGTTTATGTTAGAGGAGGGTGGGTGAGTTTTTGTG 734
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 3893 TGAGACAAAAGCCATCATGCGGAACGGTTTATGTTAAAGGAGGGTGGGTGAGTTTTTGTG 3952
Query 735 ATGCCAATGGACTTCA-AGCTGGAGATATCTACACTTTCAAACTGATCAAAAGAGGAGGA 793
|||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3953 ATGCCAATGGACTT-AGAGCTGGAGATATCTACACTTTCAAACTGATCCAAAGAGGAGGA 4011
Query 794 ACTCTTGTTCTACGTTTGTTACCCAAAG--G-GGCAGAGTCTTGTTCACTAGATCCCTCT 850
|||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||||
Sbjct 4012 ACTCTTGTTCTACGTTTGTTACCCAATGAAGAGGCAGAGTCTTCTTCACTAGATCCCTCT 4071
Query 851 TGTTTTGTGGCTAATGTTGCGCCTTCGACTCTACGCTATGACACACTGTATCTTCCAAAG 910
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 4072 TGTTTTGTGGCTAATGTCGCGCCTTCGTCTCTACGCTATGACACACTGTATCTTCCAAGG 4131
Query 911 CGTTTTATGAGGGAAAATGGTGTAGACAAAAGACGTGGAGAGATGATTCTGATGAATGAA 970
||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||| |||
Sbjct 4132 CGTTTTATGAGGGAAAATGGTGTAGACAAAAGATGTGGAAAGATTATTTTGATGAACGAA 4191
Query 971 AAGGGCAAATCATGGACTTTAGATTTGAAACTAAAGAAATCATGCGGAACTTCCCTCATC 1030
||| |||||||||||||||||||||| |||| ||||||||||||||||||||| | |||
Sbjct 4192 AAGAGCAAATCATGGACTTTAGATTTAAAACGAAAGAAATCATGCGGAACTTCTTTAATC 4251
Query 1031 AGACGAGGATGGAGAAGTTTCTGT-AGTGCCAATGGACTAAGAGCTGGAAGTATCATTAC 1089
| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |
Sbjct 4252 AAACGAGGATGGAGAAGTTTCTGTCA-TGCCAATGGACTTAGAGCTGGAAGTATCATAAA 4310
Query 1090 TTTCAAACTGATTAAGAAAAGT-GGAACTCTTGTTCTATGTTTGCTCTCCAACGAGCCA- 1147
||||||||||| || ||||| |||| |||||||||| |||||||| |||||||||||
Sbjct 4311 ATTCAAACTGATAAA-AAAAGGAGGAAATCTTGTTCTACGTTTGCTCACCAACGAGCCAA 4369
Query 1148 --GAAGAAGAAGTGTGCTCAGAAGCTAATGAAGTAGAGTCTCTTTCGACAGATCAAGAAA 1205
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4370 AAGAAGAAGAAGAGTGCTCAGAAGCTAATGAAGTAGAGTCTCTTTCGACAGATCAAGAAA 4429
Query 1206 GCCATGAAGAGAGTAGCCACAACGAGAAAATCTCAAGAAGAAAGGAAAAGAAGGGTAGAA 1265
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 4430 GCAATGAAGAGAG---CCACAACGAGAAAATCTCAAGAAGAAAGGAAAAGAAGGGTA-AC 4485
Query 1266 T-GATATGGAAAGCTTCGTCTTCACCATCCGAAAACCGATTTGTGACATTAAATCTTACA 1324
| ||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 4486 TTGATGTGGAAAGCTTCATCTTCACCATCCGAAAACCGATTTGTGACATTAACTCTTACA 4545
Query 1325 CCTTATAACATCCTACGTTCTGCACTGCGTCTTCCGATACCCTTCACGAGGATGAATGGT 1384
||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 4546 CCTTACAACATCCTACGTTCTGTACTGCGCCTTCCGATACCCTTCACGAGGATGAATGGC 4605
Query 1385 ATCAATGAAGAAACTAAAATGACTCTGTTGGATAAACATGGTATGAAGTGGTTAACGACT 1444
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 4606 ATCAACGAAGACACTAAAATGACTCTGTTGGATAAACATGGTATGAAGTGGTTAACCACT 4665
Query 1445 CTGCGGTTGGTGGACTACAAAAGAAAAAGACTGGGAATGGTAGGAGGCTGGAAAGGATTC 1504
||||||||||||||||||||||| |||||| | |||||| |||||||||| ||||||||
Sbjct 4666 CTGCGGTTGGTGGACTACAAAAGTAAAAGATTAAGAATGGCAGGAGGCTGGCAAGGATTC 4725
Query 1505 ATCCAAGCTAACGGTGTGAAGGCAAACGAATCCATCATGTTGGAACTGATTTGGGAAGAA 1564
|||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 4726 ATCCAAGCTAACTGTGTGAAGGCAAACGAATCCATCATGTTAGAGCTGATTTGGGAAGAA 4785
Query 1565 GAAACAAGTTGCGTCCTTAAGTTCTGCTCCAAGGTGAAGCTA 1606
|| |||||||| |||| || |||||||||||||||||||||
Sbjct 4786 GACACAAGTTGTATCCTGAAATTCTGCTCCAAGGTGAAGCTA 4827
> Ahg932575 jgi|Araly1|932575|scaffold_400563.1
Length=1936
Score = 691 bits (374), Expect = 0.0
Identities = 608/716 (85%), Gaps = 36/716 (5%)
Strand=Plus/Plus
Query 137 ATTTTGAAAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACACCCAC 196
||||||| |||||| || |||||||||||||||||||||||||| || ||||||| |||
Sbjct 375 ATTTTGAGAATGGCAAAGCAACATTTCTTCAAGCCTCTTCTTCCCGGATTCCACAGTCAC 434
Query 197 TTGAGAATACCTGTAGCCTTCTTCTTGAAGAATATAGAAGGAAGATATGAGCAGAAGACG 256
|||| ||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 435 TTGACAATTCCTGTGGCTTTCTTCTTGAAGAATATAGAAGGAAGACATGAGCAGAAGACG 494
Query 257 GCGGAGCTGAGATCAGATGCGTCAAAGATAACTTGGGAAGTGAAGATAGATGGACAGAGA 316
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 495 GCGGAGCTGAGATCAGACGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGA 554
Query 317 CTCACTGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCGAATCGGTGACATTGTT 376
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 555 CTCACTGACGGTTGGAAAGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTG 614
Query 377 GT-TTTCAGACAAGAGAGAGATATGTCTTTCCACGTTACAATGTTGGGACCTAGTTGTTG 435
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 615 GTGTTT-AGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTTGGGACCTAGTTGTTG 673
Query 436 TGAGATCCAATATGGTTCGTGTTCAGACGAGGAGAGA-AACCTCG--A-GA---A--G-A 485
|||||| |||||||||||||||| |||| | ||| | ||||||| | || | | |
Sbjct 674 TGAGATTCAATATGGTTCGTGTTTAGACAACAAGA-ACAACCTCGGGAAGATTCAAAGGA 732
Query 486 AGAAGAATCCAA-ATGGAGAAGCAAAGTCTTCTTCACTAGATCCTTCTTGTTTT-TCGGC 543
|||||||||||| | | |||| || ||||||| ||||||||||||||||||||| | |||
Sbjct 733 AGAAGAATCCAAGAAG-AGAAACAGAGTCTTCGTCACTAGATCCTTCTTGTTTTGT-GGC 790
Query 544 TAATGTGGCGCCTTCGAGTCTACGTTATGACTTAATGCTTTTTCCAATGG-GTTTTGTGA 602
|||||| || |||||||||||| ||||| | || | |||||| | |||||||||
Sbjct 791 TAATGTCACGGTTTCGAGTCTACGCGATGACAGACTGAATCTTCCAA-GAAGTTTTGTGA 849
Query 603 GGGAAAATGGTGTAGTCG---GATCTGGAAAGATTGTTCTGATGAATGAAAAGGGCAGAT 659
||||||||||| ||| | ||| || | |||||||||||||||||||||||||||||
Sbjct 850 GGGAAAATGGTCTAGACAAAAGATGTGTAGAGATTGTTCTGATGAATGAAAAGGGCAGAA 909
Query 660 CATGGAATTTTA-ACTTGAGACAAAAGCCA-TCATGCGGAAC-AGTTTATGTTAGAGGAG 716
|||||| ||| | | |||| | ||| | | |||| |||||| | || | | | | |||
Sbjct 910 CATGGACTTT-AGATTTGAAAGGAAA-CAAATCATACGGAACTACTT-ACATCAAACGAG 966
Query 717 GGTGGGTGA-GTTTTTGTGATGCCAATGGACTTCA-AGCTGGA-GATATCTACACTTTCA 773
| ||| || |||| || |||||||||||||| | ||||||| | ||||| ||||||||
Sbjct 967 GATGGA-GAAGTTTCTGCCATGCCAATGGACTT-AGAGCTGGAAG-TATCTTCACTTTCA 1023
Query 774 AACTGATCAAAAGAGGAGGAACTCTTGTTCTACGTTTGTTAC-CCAAAGGGGCAGA 828
|||||||||||| |||| ||||| |||||||||||||| | |||||| | ||||
Sbjct 1024 AACTGATCAAAAAAGGAAAAACTCCGGTTCTACGTTTGTT-CTCCAAAGAGCCAGA 1078
Score = 401 bits (217), Expect = 7e-111
Identities = 360/427 (84%), Gaps = 18/427 (4%)
Strand=Plus/Plus
Query 825 CAGAGTCTTGTTCACTAGATCCCTCTTGTTTTGTGGCTAATGTTGCGCCTTCGACTCTAC 884
||||||||| ||||||||||||||||||||||||||||||| || ||| ||||| |||||
Sbjct 1177 CAGAGTCTTCTTCACTAGATCCCTCTTGTTTTGTGGCTAATATTACGCGTTCGAGTCTAC 1236
Query 885 GCTATGACACACTGTATCTTCCAAAGCGTTTTATGAGGGAAAATGGTGTAGACAAAAGAC 944
| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 1237 GTTATGACATACTGTATCTTCCAAAGCGTTTTATGAGGGCAAATGGTCTAGACACAAGAT 1296
Query 945 GTGGAGAGATGATTCTGATGAATGAAAAGGGCAAATCATGGACTTTAGATTTGAAACTAA 1004
|||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||| ||
Sbjct 1297 GTGGAGAGATGATTTTGATGAACGAAAAGGGCAGATCATGGGCTTTAGATTTGAAACGAA 1356
Query 1005 AGAAATCATGCGGAACTTCCCT-CATCAGACGAGGATGGAGAAGTTTCTGTAGTGCCAAT 1063
|||| |||||||||||| | | ||||| |||||||||||||||||||||| ||| ||||
Sbjct 1357 AGAACTCATGCGGAACTACT-TACATCAAACGAGGATGGAGAAGTTTCTGTCGTGTCAAT 1415
Query 1064 GGACTAAGAGCTGGAAGTATC-ATTACTTTCAAACTGATTAAGAAAAGTG-GAACTCTTG 1121
||||| |||||||||||| || || |||||||||||||| | ||| | ||||||| |
Sbjct 1416 GGACTTAGAGCTGGAAGTTTCTAT-ACTTTCAAACTGATCCA-AAATGAAAGAACTCTGG 1473
Query 1122 TTCTATGTTTGCTCTCCAACGAGCCAGAAGAAGAAGTGTGCTCAGAAGCTAATGAAGTAG 1181
||||| ||||| || |||| |||||||||||||||| | | |||| |||| |||
Sbjct 1474 TTCTACGTTTGGTCCCCAAAGAGCCAGAAGAAGAAGAA-GAA-A-AAGCCAATG---TAG 1527
Query 1182 AGTCTCTTTCGACAGATCAAGAAAGCCATGAAGAGAGTAGCCACA-ACGAGAAAATCTCA 1240
|||||||||| ||||| | || | |||||||||| ||||| | | ||||| | ||||
Sbjct 1528 AGTCTCTTTCCACAGAACC-GAGTG--ATGAAGAGAGCAGCCA-AGATGAGAAGAGCTCA 1583
Query 1241 AGAAGAA 1247
|||||
Sbjct 1584 C-AAGAA 1589
> Ahg932560 jgi|Araly1|932560|scaffold_400548.1
Length=1828
Score = 682 bits (369), Expect = 0.0
Identities = 607/717 (85%), Gaps = 36/717 (5%)
Strand=Plus/Plus
Query 137 ATTTTGAAAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACACCCAC 196
||||||| |||||| || |||||||||||||||||||||||||| || ||||||| |||
Sbjct 201 ATTTTGAGAATGGCAAAGCAACATTTCTTCAAGCCTCTTCTTCCCGGATTCCACAGTCAC 260
Query 197 TTGAGAATACCTGTAGCCTTCTTCTTGAAGAATATAGAAGGAAGATATGAGCAGAAGACG 256
|||| ||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 261 TTGACAATTCCTGTGGCTTTCTTCTTGAAGAATATAGAAGGAAGACATGAGCAGAAGACG 320
Query 257 GCGGAGCTGAGATCAGATGCGTCAAAGATAACTTGGGAAGTGAAGATAGATGGACAGAGA 316
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 321 GCGGAGCTGAGATCAGACGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGA 380
Query 317 CTCACTGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCGAATCGGTGACATTGTT 376
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 381 CTCACTGACGGTTGGAAAGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTG 440
Query 377 GT-TTTCAGACAAGAGAGAGATATGTCTTTCCACGTTACAATGTTGGGACCTAGTTGTTG 435
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 441 GTGTTT-AGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTTGGGACCTAGTTGTTG 499
Query 436 TGAGATCCAATATGGTTCGTGTTCAGACGAGGAGAGA-AACCTCG--A-GA---A--G-A 485
|||||| |||||||||||||||| |||| | ||| | ||||||| | || | | |
Sbjct 500 TGAGATTCAATATGGTTCGTGTTTAGACAACAAGA-ACAACCTCGGGAAGATTCAAAGGA 558
Query 486 AGAAGAATCCAA-ATGGAGAAGCAAAGTCTTCTTCACTAGATCCTTCTTGTTTT-TCGGC 543
|||||||||||| | | |||| || ||||||| ||||||||||||||||||||| | |||
Sbjct 559 AGAAGAATCCAAGAAG-AGAAACAGAGTCTTCGTCACTAGATCCTTCTTGTTTTGT-GGC 616
Query 544 TAATGTGGCGCCTTCGAGTCTACGTTATGACTTAATGCTTTTTCCAATGG-GTTTTGTGA 602
|||||| || |||||||||||| ||||| | || | |||||| | |||||||||
Sbjct 617 TAATGTCACGGTTTCGAGTCTACGCGATGACAGACTGAATCTTCCAA-GAAGTTTTGTGA 675
Query 603 GGGAAAATGGTGTAGTCG---GATCTGGAAAGATTGTTCTGATGAATGAAAAGGGCAGAT 659
||||||||||| ||| | ||| |||| |||||||||||||||||||||||||||||
Sbjct 676 GGGAAAATGGTCTAGACACAAGATGTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGAA 735
Query 660 CATGGAATTTTA-ACTTGAGACAAAAGCCA-TCATGCGGAAC-AGTTTATGTTAGAGGAG 716
|||||| ||| | | |||| | ||| | | |||| | |||| | || | | | | ||
Sbjct 736 CATGGACTTT-AGATTTGAAAGGAAA-CAAATCATACAGAACTACTT-ACATCAAACAAG 792
Query 717 GGTGGGTGA-GTTTTTGTGATGCCAATGGACTTCA-AGCTGGA-GATATCTACACTTTCA 773
| ||| || |||| ||| |||||||||||||| | ||||||| | ||||| |||||| |
Sbjct 793 GATGGA-GAAGTTTCTGTCATGCCAATGGACTT-AGAGCTGGAAG-TATCTTCACTTTTA 849
Query 774 AACTGATC-AAAAGAGGAGGAACTCTTGTTCTACGTTTGTTACCCAAAGGGGCAGAG 829
|||||||| |||| |||| ||||| ||||||||||||| ||||||| | |||||
Sbjct 850 AACTGATCCAAAA-AGGAAAAACTCCGGTTCTACGTTTGTCCCCCAAAGAGCCAGAG 905
Score = 516 bits (279), Expect = 3e-145
Identities = 655/827 (79%), Gaps = 64/827 (8%)
Strand=Plus/Plus
Query 826 AGAGTCTTGTTCACTAGATCCCTCTTGTTTTGTGGCTAATGTTGCGCCTTCGACTCTACG 885
|||||||| |||||||||||| ||||||||||||||| || || ||| ||||| ||||||
Sbjct 1016 AGAGTCTTCTTCACTAGATCCATCTTGTTTTGTGGCTCATATTACGCGTTCGAGTCTACG 1075
Query 886 CTATGACACACTGTATCTTCCAAAGCGTTTTATGAGGGAAAATGGTGTAGACAAAAGACG 945
||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||| |
Sbjct 1076 TTATGACATACTGTATCTTCCAAAGCGTTTTATGAGGGAAAATGGTCTAGATACAAGATG 1135
Query 946 TGGAGAGATGATTCTGATGAATGAAAAGGGCAAATCATGGACTTTAGATTTGAAACTAAA 1005
||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||| |||
Sbjct 1136 TGGAGAGATGATTTTGATGAACGAAAAGGGCAGATCATGGGCTTTAGATTTGAAACGAAA 1195
Query 1006 GAAATCATGCGGAACTTCCCT-CATCAGACGAGGATGGAGAAGTTTCTGTAGTGCCAATG 1064
||| |||||||||||| | | ||||| |||||||||||||||||||||| |||||||||
Sbjct 1196 GAACTCATGCGGAACTACT-TACATCAAACGAGGATGGAGAAGTTTCTGTCGTGCCAATG 1254
Query 1065 GACTAAGAGCTGGAAGTATC-ATTACTTTCAAACTGATTAAGAAAAGTG-GAACTCTTGT 1122
|||| |||||||||||| || || |||||||||||||| | ||| | ||||||| ||
Sbjct 1255 GACTTAGAGCTGGAAGTTTCTAT-ACTTTCAAACTGATCCA-AAATGAAAGAACTCTGGT 1312
Query 1123 TCTATGTTTGCTCTCCAACGAGCCAGAAGAAGAAGTGTGCTCAGAAGCTAATGAAGTAGA 1182
|||| ||||| || |||| |||||||||||||||| | | |||| |||| ||||
Sbjct 1313 TCTACGTTTGGTCCCCAAAGAGCCAGAAGAAGAAGAA-GAA-A-AAGCCAATG---TAGA 1366
Query 1183 GTCTCTTTCGACAGATCAAGAAAGCCATGAAGAGAGTAGCCACA-ACGAGAAAATCTCA- 1240
||||||||| ||||| | || | |||||||||| ||||| | | ||||| | ||||
Sbjct 1367 GTCTCTTTCCACAGAACC-GAGTG--ATGAAGAGAGCAGCCA-AGATGAGAAGAGCTCAC 1422
Query 1241 A-GAA-G---AAA------GGAAAAGAAGGGTAGAATGATATGGAAAGCTTCGTCTTCAC 1289
| ||| | ||| |||||||||| ||| | ||||| ||||||||| ||||||
Sbjct 1423 AAGAATGTTCAAAAACAATGGAAAAGAAGAGTATATTGATACAGAAAGCTTCATCTTCAG 1482
Query 1290 CATCCGAAAACCGATTTGTGACATTAAATCTTACACCTTATAACATCCTACGT-TCT-GC 1347
||||| ||| |||||| ||||| ||| |||||||| ||| ||| || | | ||| |
Sbjct 1483 CATCCCAAAGCCGATTCGTGACCGTAACTCTTACACTTTACAACGTCAG-CTTATCTAG- 1540
Query 1348 ACTG-CGTCTTCCGATACCCTTCACGA-GGATGAATGGTAT-CAATGAA-G-AAACTAAA 1402
|||| | |||||| ||||| ||||| | || ||||||| || ||| || | ||| ||
Sbjct 1541 ACTGAC-TCTTCCCATACCTTTCACAAAGG-TGAATGGCATACAA--AATGCAAAG-AAG 1595
Query 1403 ATGACTCTGTTGGATAAACATGGTATGAAGTGGT-TAACGACTCTGCGGTTGGTGGACTA 1461
|||| | | |||||||||||||| |||| |||| || ||| |||| |||| || || |
Sbjct 1596 ATGAGTTTCTTGGATAAACATGGCGTGAAATGGTCTA-CGAGTCTGAGGTT--TGAAC-A 1651
Query 1462 CAAAAGAAAAAGACTGGGAATGGTAGGAGGCTGGAAAG-GATTCATCCAA-GCTAACGGT 1519
| | | ||| || || |||||||||||||||||| | || | | | || ||||||
Sbjct 1652 GGACCGTCAGAGAATGAGATTGGTAGGAGGCTGGAAAGAGTTT--TGCGATGCGAACGGT 1709
Query 1520 GTGAAGGCAA-ACGAATCCATCATGTTGGAACT-GATTTGGGAAGAAGA-AACAAG-TTG 1575
|||||| | ||||| ||||||||||| || | ||||| ||| ||| || ||| ||
Sbjct 1710 GTGAAGATTGGA-GAATCGATCATGTTGGAGCTAGTTTTGG-AAGCAGACAA-AAGCTTT 1766
Query 1576 CGTCCTTAAGTTCTGCTCCAAGGTGAA-GCTAGCA-ATCAAATGAAA 1620
|| |||||||||||||||||||| || || || | |||||||||||
Sbjct 1767 -GTTCTTAAGTTCTGCTCCAAGGT-AATGCAAG-AGATCAAATGAAA 1810
> Ahg932960 jgi|Araly1|932960|scaffold_400948.1
Length=1648
Score = 527 bits (285), Expect = 1e-148
Identities = 563/692 (81%), Gaps = 40/692 (6%)
Strand=Plus/Plus
Query 139 TTTGAAAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACACCCACTT 198
||||| |||||| |||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 14 TTTGAGAATGGCAAATCAACATTTCTTCAAGCCACTTCTTCCTGGCTTTCACAGCCACTT 73
Query 199 GA-GAATACCTGTAGCCTTCTTCTTGAAGAATATAGAAGGAAGATATGAGCAGAAGACGG 257
|| | || ||||| || || ||||| |||||||||||||||||| |||||||||||||||
Sbjct 74 GACG-ATTCCTGTGGCTTTTTTCTTTAAGAATATAGAAGGAAGAAATGAGCAGAAGACGG 132
Query 258 CGGAGCTGAGATCAGATGCGTCAAAGATAACTTGGGAAGTGAAGATAGATGGACAGAGAC 317
||||| | |||||||| || || || | ||| ||| ||||||| |||||||| |||||||
Sbjct 133 CGGAGTTAAGATCAGACGCATCGAACAAAACCTGGAAAGTGAAAATAGATGGCCAGAGAC 192
Query 318 TCACTGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCGAATCGGTGACATTGTTG 377
| || ||||||||| ||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 193 TTACAAACGGTTGGAGAGACTTTGCTCTCGCACATGATCTTCGAATCGGTGACATCATTG 252
Query 378 TTTTCAGACAAGAGAGAGATATGTCTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTG 437
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 253 TTTTCAGACAAGAGAGAGACATGACTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTG 312
Query 438 AGATCCAATATG-GTTCGTGTTCAGACGAGGAGAGA-AACCTCGAGAAGAAGAAGAATCC 495
|||| ||||||| || | |||| |||| | ||| | |||| || | || || ||
Sbjct 313 AGATTCAATATGTGT-CTTGTTTAGACAACCAGA-ACAACCGCG-G--GACGAT---TC- 363
Query 496 AAATGGA-GAAGCAAA--GTCT--TCTTCACTAGATC-CTTCTTGTTTT-TCGGCTAATG 548
||| ||| |||| ||| | | ||||||||||||| || ||||||| | ||||||||
Sbjct 364 AAA-GGAAGAAGAAAAAAGCCGAGTCTTCACTAGATCTCT-CTTGTTTCGT-GGCTAATG 420
Query 549 TGGCGCCTTCGAGTCTACGTTATGACTTAATGCTTTTTCCAATGGGTTTTGTGAGGGAAA 608
| | ||||||| |||||||||||||| | || | |||||||| |||||||||||| ||
Sbjct 421 TCACTCCTTCGAATCTACGTTATGACTCACTGAATCTTCCAATGTGTTTTGTGAGGGCAA 480
Query 609 ATGGTGTAGTCG---GATCTGGAAAGATTG-TTCTGATGAATGAAAAGGGCAGATCATGG 664
||||| ||| | ||| ||| |||| | ||||||| || ||||||||||||||||||
Sbjct 481 ATGGTCTAGACAATAGATGTGGCGAGAT-GATTCTGATCAACGAAAAGGGCAGATCATGG 539
Query 665 AATTTTAACTT-GAGACAAAAGCCATCATGCGGAAC-AGTTTATGTTAGAGGAGGGTGGG 722
| | | | ||| || || |||| |||||| | ||| | || | | ||| |||| |||
Sbjct 540 ACTGT-AGCTTTGAAACGAAAGAAATCATGTGCAACTACTT-ACATCAGACGAGGATGGA 597
Query 723 TGAGTTTT-TGTGATGCCAATGGACTTCA-AGCTGGA-GATATCTACACTTTCAAACTGA 779
|| ||| ||| |||| ||||||||| | ||||||| | | ||| ||||||||||||||
Sbjct 598 -GAAATTTCTGTAATGCTAATGGACTT-AGAGCTGGAAGTT-TCTTCACTTTCAAACTGA 654
Query 780 TCAAAAGAGGAGGAACTCTTG-TTCTACGTTT 810
|| |||| ||||||||||| | || |||||||
Sbjct 655 TCGAAAGGGGAGGAACTCTGGGTT-TACGTTT 685
> Ahg932837 jgi|Araly1|932837|scaffold_400825.1
Length=1042
Score = 294 bits (159), Expect = 1e-78
Identities = 443/572 (77%), Gaps = 52/572 (9%)
Strand=Plus/Plus
Query 253 GACGGCGGAGCTGAGATCAGATGCGTCAAAGATAACTTGGGAAGTGAAGATAGATGGACA 312
|||||| ||| | |||||||| || || |||| ||| ||| ||||||| |||||||| ||
Sbjct 74 GACGGCAGAGTTAAGATCAGACGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 133
Query 313 GAGACTCACTGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCGAATCGGTGACAT 372
||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 134 GAGACTCACCAACGGTTGGACAGAGTTTGCTCTCGCACATGATCTTCGAATCGGCGACAT 193
Query 373 TGTTGTTTTCAGACAAGAGAGAGATATGTCTTTCCACGTTACAATGTTGGGACCTAGTTG 432
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 194 CATTGTTTTCAGACAAGAGAGATCCATGACTTTCCACGTTACAATGTTGGGACCTAGTTG 253
Query 433 TTGTGAGATCCAATATG-GTTCGTGT-TCAGACGAGGAGAGA-AACCTCGAGAAGAAGAA 489
|| |||||| ||||||| || | ||| | |||| | ||| | ||||||| ||||| |
Sbjct 254 TTATGAGATTCAATATGTGT-CTTGTCT-AGACAACCAGA-ACAACCTCGGGAAGATTCA 310
Query 490 GAATCCA-AATGGA-GAAGCAAAGTCTTCTTCACTAGATC-CTTCTTGTTT--TTCGGCT 544
|| | || | | |||||| ||||||| |||||||| || ||||||| || | ||
Sbjct 311 -AAGGAAGAA-GAAAGAAGCAGAGTCTTC---ACTAGATCTCT-CTTGTTTCATT-G-CT 362
Query 545 AATGTGGCGCCTTCGAGTCTACGTTATGACTTAATGCTTTTTCCAATGGGTTTTGTGAGG 604
||||| ||||||||| |||||||||||||| | || | ||||| | | | |
Sbjct 363 AATGTCACGCCTTCGAATCTACGTTATGACTCACTGGA----CAAATGG-TCTAG--AC- 414
Query 605 GAAAATGGTGTAGTCGGATCTGGAAAGATTGTTCTGATGAATGAAAAGGGCAGATCATGG 664
|||| | ||| | || || || | || ||||| || |||| ||| |||||||||
Sbjct 415 -AAAA-GATGTGG-CG-ATATG-A----TT---CTGATCAACGAAA-GGGTAGATCATGG 461
Query 665 AATTTTAACTT-GAGACAAAAGCCATCATGCGGAAC-AGTTTATGTTAGAGGAGGGTGGG 722
| | | | ||| || || |||| |||||| ||||| | || | | ||| |||| |||
Sbjct 462 ACTGT-AGCTTTGAAACGAAAGAAATCATGTGGAACTACTT-ACATCAGACGAGGATGGA 519
Query 723 TGA-GTTTTTGTGATGCCAATGGACTTCA-AGCTGGA-GATATCTACACTTTCAAACTGA 779
|| |||| ||| |||| ||||||||| | ||||||| | | ||| ||||||||||||||
Sbjct 520 -GAAGTTTCTGTCATGCTAATGGACTT-AGAGCTGGAAGTT-TCTTCACTTTCAAACTGA 576
Query 780 TCAAAAGAGGAGGAACTCTTG-TTCTACGTTT 810
|| |||| ||||||||||| | || |||||||
Sbjct 577 TCGAAAGGGGAGGAACTCTGGGTT-TACGTTT 607
Score = 195 bits (105), Expect = 1e-48
Identities = 159/184 (86%), Gaps = 8/184 (4%)
Strand=Plus/Plus
Query 922 GGA-AAATGGTGTAGACAAAAGACGTGGAGAGATGATTCTGATGAATGAAAAGGGCAAAT 980
||| ||||||| ||||||||||| |||| || ||||||||||| || | |||||| | ||
Sbjct 398 GGACAAATGGTCTAGACAAAAGATGTGGCGATATGATTCTGATCAACG-AAAGGGTAGAT 456
Query 981 CATGGACTTTAGATTTGAAACTAAAGAAATCATGCGGAACTTCCCT-CATCAGACGAGGA 1039
|||||||| ||| |||||||| |||||||||||| ||||| | | | |||||||||||||
Sbjct 457 CATGGACTGTAGCTTTGAAACGAAAGAAATCATGTGGAAC-TACTTACATCAGACGAGGA 515
Query 1040 TGGAGAAGTTTCTGT-AGTGCCAATGGACTAAGAGCTGGAAGTATCATT-ACTTTCAAAC 1097
||||||||||||||| | ||| |||||||| |||||||||||| || || ||||||||||
Sbjct 516 TGGAGAAGTTTCTGTCA-TGCTAATGGACTTAGAGCTGGAAGTTTC-TTCACTTTCAAAC 573
Query 1098 TGAT 1101
||||
Sbjct 574 TGAT 577
Score = 87.9 bits (47), Expect = 2e-16
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 139 TTTGAAAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACACCCACTT 198
||||| |||||||||||||||||||||||||||||||||||||||||| || | | ||||
Sbjct 14 TTTGAGAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTTCAAAGCTACTT 73
Query 199 GA 200
||
Sbjct 74 GA 75
> Ahg932846 jgi|Araly1|932846|scaffold_400834.1
Length=1632
Score = 207 bits (112), Expect = 2e-52
Identities = 138/149 (93%), Gaps = 7/149 (5%)
Strand=Plus/Plus
Query 301 GATAGATGGACAGAGACTCACTGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCG 360
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 1298 GATAGATGGACAGAGACTCACTGACGGTTGGAAAGAGTTCGCTCTCTCGCATGATC-T-- 1354
Query 361 AATCGGTGACATTGTTGTTTTCAGACAAGAGAGAGATATGTCTTTCCACGTTACAATGTT 420
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1355 --TC--TGACATTGTTGTTTTCAGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTT 1410
Query 421 GGGACCTAGTTGTTGTGAGATCCAATATG 449
||||||||||||||||||||| |||||||
Sbjct 1411 GGGACCTAGTTGTTGTGAGATTCAATATG 1439
Score = 82.4 bits (44), Expect = 1e-14
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 136 GATTTTGAAAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACACCCA 195
|||||||| |||||| || ||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 1235 GATTTTGAGAATGGCCAAGCAACATTTCTTCAAGCCTCTTCTTCCTGGATTCTACAGTCA 1294
Query 196 CTTGA 200
|||||
Sbjct 1295 CTTGA 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68105358060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5