BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24670.1
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899837 jgi|Araly1|899837|Al_scaffold_0004_487 726 0.0
> Ahg899837 jgi|Araly1|899837|Al_scaffold_0004_487
Length=627
Score = 726 bits (393), Expect = 0.0
Identities = 519/579 (90%), Gaps = 12/579 (2%)
Strand=Plus/Plus
Query 316 CCCATATTCACGACCACTCATTAAGAGAATCTCCA-ACAAGACGCAGTAGAAACAGACAT 374
||||||||||||||| | ||||||||||||||||| ||| ||||| ||||||||||| |
Sbjct 38 CCCATATTCACGACCGCGCATTAAGAGAATCTCCATCCAA-ACGCACTAGAAACAGACGT 96
Query 375 GATCTCCCTCCTATGTCTCCTCCCATGGAACAACGAAAATCTAAGAAGGCAAAACGCAGT 434
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 97 GATGTCCCTCCTATGTCTCCTCCCATGAAACAACCAAAATCTAAGAAGGCAAAACGCAGT 156
Query 435 ACGGATGCTTCTTCTTCCAAGACAAGAGAGCCGACGCCAGGGTGGCTTATCAGCTTGATG 494
|||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 157 TCGGAAGCTTCTTCTTCCAAGACAAGAGAACCGACGCTAGGGTGGCTTATCAGGTTGATG 216
Query 495 AGAAGCAAGAACGGTGGAGACG-TTGAAGACAATTCGAAGAAGATCATAGATAAAGAATT 553
||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 217 AGAAGAAAGAACGGTAGAGA-GCACGAAGACAATTCGAAGAAGATCATAGATAAAGAATT 275
Query 554 ATTCC-AAACCGATGTCGATCCACACCAA-AGTCGTCTCTCAATACCTGTCAGCCAGATC 611
| || |||||||||| ||||| | ||| | |||||||||||||||| ||||| | ||
Sbjct 276 A-ACCGCAACCGATGTCCATCCA-AACAACAATCGTCTCTCAATACCTCTCAGCAACATT 333
Query 612 GTGGAGTTGGAATTCTTGAACCACGAGGAAAAAAGGGCCATAGAAGAAGATGCCAATAGG 671
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 334 GTGGAATTGGAATTCTTGAACCACGAGGAAAAAAGGGCCATAGAAGAAGATGCCAATAAG 393
Query 672 GTTCGCAAAGAAGGAGTAGACGCGATACTCGTGGA-TTCTCATCTAAGGGAATTTCCGGT 730
||| |||||||||||||||||||||||||||| | |||| ||||||| ||||||| |||
Sbjct 394 GTTAACAAAGAAGGAGTAGACGCGATACTCGTG-ACTTCTGATCTAAGAGAATTTCAGGT 452
Query 731 GAATTTGAGGTTGAGGGACATGAGGGGCATTCTTCTATACAATTTGGTTGCAGGGTGGAA 790
||||||||||||| |||||||||| |||| ||||| ||||||||||||| ||||||||||
Sbjct 453 GAATTTGAGGTTGTGGGACATGAGAGGCAGTCTTCAATACAATTTGGTTACAGGGTGGAA 512
Query 791 TCAAGTGGTT-ACAGATTGCCTTCTAGAGGAAAACACAAATATTCGCCTATGGTCTTTCC 849
|||||||||| | |||||||| |||| || |||| | ||||| |||||| ||||||||||
Sbjct 513 TCAAGTGGTTGA-AGATTGCCGTCTAAAGAAAAATAGAAATAATCGCCTCTGGTCTTTCC 571
Query 850 ACGCCGATGATACACTCTATTTCGCTCTCGTTCCTCTCT 888
|| || |||||| ||||||||||||||||||||||||||
Sbjct 572 ACTCCAATGATAAACTCTATTTCGCTCTCGTTCCTCTCT 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33319429458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5