BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24680.2 Length=1765 Score E Sequences producing significant alignments: (Bits) Value Ahg899838 jgi|Araly1|899838|Al_scaffold_0004_488 935 0.0 Ahg899837 jgi|Araly1|899837|Al_scaffold_0004_487 377 1e-103 > Ahg899838 jgi|Araly1|899838|Al_scaffold_0004_488 Length=2334 Score = 935 bits (506), Expect = 0.0 Identities = 685/771 (89%), Gaps = 14/771 (2%) Strand=Plus/Plus Query 692 AGAGATTCAACTT-CACCAAGCCAAAACCGGTTTATGACATTAACACTTACTCATGACAA 750 |||||||| | || || |||||||||||| |||| |||||||| ||||| | ||||||| Sbjct 1570 AGAGATTC-ATTTCCAGCAAGCCAAAACCAGTTTGTGACATTATCACTTTCACATGACAG 1628 Query 751 CCTCATAAAAAGTAGACGGTATCTTCCGTTGTCATTCACAAGAGATAATGGCTTGGACAA 810 ||||| |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| | Sbjct 1629 CCTCAGAAAAGGTAGACAGTATCTTCCATTGTCATTCACAAGAGAAAATGGCTTGGACGA 1688 Query 811 ACCTGGGATGATTTTTCT-GTTGGGCAAA-ACTGGTAGAAAGTGGGAGGCAAATCTTCTA 868 ||||||||| || ||| ||| ||||| | ||||| ||||| |||||||| ||||||| Sbjct 1689 ACCTGGGATAATAACTCTGGTT-AGCAAAGA-TGGTACAAAGTTGGAGGCAAGTCTTCTA 1746 Query 869 AGGGAAGCCTCAGGAAGAATTGTTTTGACGGGAAAGGGCTGGAAAGAGTTCGCCATGGCA 928 ||||| | ||||| || || | | | |||||||||||||||||||||||||| | | Sbjct 1747 CGGGAAAACAAAGGAATAA-TG-TGTCTC-GGAAAGGGCTGGAAAGAGTTCGCCATAGAA 1803 Query 929 AACGGCTTAAAAAGCGGTGAATTGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCT 988 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1804 AACGGCTTAAAAACCGGCGAATTGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCT 1863 Query 989 ATGCTCAGTTTGGTCAATACACAGTCCACAAATTATAGAAGCCAACAAGGAGAATGTTC- 1047 |||||||||||| ||| |||| ||||||||| | |||||||||| |||||||| ||||| Sbjct 1864 ATGCTCAGTTTGCTCAGTACAGAGTCCACAAGTGATAGAAGCCAGCAAGGAGAGTGTTCC 1923 Query 1048 AAGAGATAGCGAGAAGGAGTCGTCGATTTGTGCTGAACCTAGTAGAGGAAACAAGAAGTG 1107 || |||||||||||| |||||| |||| ||| |||||||| | || |||||||||| Sbjct 1924 AA-AGATAGCGAGAAAGAGTCG---ATTTCTGCAGAACCTAGCAAAGAAAACAAGAAGAA 1979 Query 1108 GAAAGCTACTAACAACAGAAAGGAGAGGAGAGACTCGTCGTCAGCAATCCAAAATCGATA 1167 |||||| |||| ||||||| |||||||||||||||| || |||||||||||||| ||||| Sbjct 1980 GAAAGCCACTAGCAACAGAGAGGAGAGGAGAGACTCTTCTTCAGCAATCCAAAAGCGATA 2039 Query 1168 TGTGACATTAACACTCACACCAGAAGATGTCAGAGCCTGTACACTAATTCTTCCGAGTCA 1227 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| Sbjct 2040 TGTGACATTAACACTCACACCAGAAGATGTCAGCGCCTGTAAACTAATTCTTCCAAGTCA 2099 Query 1228 ATTCATGAAAGCTAATGGCATCAACAAGCTTGGGAAGAAAACTTTGTTGGGTCAAAACAG 1287 ||||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||| Sbjct 2100 ATTCATGAAAGCTAATGGCATTAACAAGCTCGGGAAGATAACTTTGGTGGGTCAAAACAG 2159 Query 1288 AAAGAAGTGGTTTGCATATCTACTGTCAAAAAGTGGATTTGTGGCACTGGGATCTGGTTG 1347 || ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| Sbjct 2160 AACGAAGTGGTTTGCATATCTACTGTCAAAAAATGGAATTGTGGCTCTGGGATCTGGTTG 2219 Query 1348 GAAAGGTTTCTGTGAAGCTAATGGCGTTAAGACAGGAGAATCATTCAATTTGGAATATAT 1407 ||| |||||||||||||||||||||||||||||||| || ||||||| |||||||||||| Sbjct 2220 GAAGGGTTTCTGTGAAGCTAATGGCGTTAAGACAGGGGAGTCATTCACTTTGGAATATAT 2279 Query 1408 TGATGAACAAGACACAACTCCTGTGTTTAAGTTCTGTTCCAACTCCGTAGA 1458 |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2280 TGATGAACAAGACACAACTCCTGTGTTTAAGTTCTGGTCCAACTCCGTAGA 2330 Score = 697 bits (377), Expect = 0.0 Identities = 692/836 (83%), Gaps = 54/836 (6%) Strand=Plus/Plus Query 359 TATCTTCCACAAGATTTAACAAG-TTCAGTTGGTCTTGAAAGGAAATACCGTGAGATTGT 417 |||||||||||||||||||| || || | |||||||||||||||||| |||||||||||| Sbjct 823 TATCTTCCACAAGATTTAAC-AGCTTTAATTGGTCTTGAAAGGAAATGCCGTGAGATTGT 881 Query 418 TGTAACAGATGAAAGGGAAAGAAGATCATGGGCGTTGGATCTGAGGTTCAACAAATCATC 477 ||||||||||||||||| | |||||||||||| ||||| |||| ||||||||||||||| Sbjct 882 TGTAACAGATGAAAGGG--A-AAGATCATGGGCATTGGAGCTGAAGTTCAACAAATCATC 938 Query 478 TGATACTTTCTACATAAGCCGAGGTTGGAGGAGTTTCTGTGATGAAAACGGTAA-AAAGC 536 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| Sbjct 939 TGATACTTTCTACATAAGCCGAGGTTGGAGAAGTTTCTGTGATGAAAACGATAAGAAAG- 997 Query 537 CAGGAGGTGTCTTTGTTTTCAAACTAGTTGGAAACAGGGAAACTCCGGTGCTTAGTTTCT 596 | || || ||||||||||||| | |||||||||||||||||||||| ||||| ||||||| Sbjct 998 CTGGCGGCGTCTTTGTTTTCAGATTAGTTGGAAACAGGGAAACTCCAGTGCTCAGTTTCT 1057 Query 597 GTTCCACTGAATCTATCAACGATGGAACACAAGGACATAAGAACAACAAATACAATTGTA 656 ||||||||||||||||| | | | | || | ||| ||| ||| || |||| Sbjct 1058 GTTCCACTGAATCTATC-A--A--G-A-AC-A--ACA-AAG------AAA-AC---TGTA 1096 Query 657 TGGAGCTGAAGAGCAAGAAGAAGCGTATGAGATGTAGAGATTCAACTTCACCAAGCCAAA 716 |||||||| |||| |||||||||| | ||| ||||| ||||||||||||||||||||||| Sbjct 1097 TGGAGCTGGAGAGAAAGAAGAAGCATCTGAAATGTATAGATTCAACTTCACCAAGCCAAA 1156 Query 717 ACCGGTTTATGACATTAACACTTACTCATGACAACCTCATAAAAAGTAGACGGTATCTTC 776 |||||||| | |||||| ||||| | ||||||||||||| || | ||| |||| |||||| Sbjct 1157 ACCGGTTTGTAACATTATCACTTTCACATGACAACCTCAGAACAGGTACACGGCATCTTC 1216 Query 777 CGTTGTCATTCACAAGAGATAATGGCTTGGACAAACCTGGGATGATTTTTCTG-TTGGGC 835 | ||||||| ||||||||||||||||||||||||||||||| || |||| ||| | Sbjct 1217 CACTGTCATTTGCAAGAGATAATGGCTTGGACAAACCTGGGATAATAACTCTGGTTGA-C 1275 Query 836 AAA-ACTGGTAGAAAGTGGGAGGCAAATCTTCTAAGGGAAGCCTCAGGAA-GAATTGTTT 893 ||| | ||||| ||| || |||||||||||| | ||||| |||||| || | |||| Sbjct 1276 AAAGA-TGGTACAAAAAGGAAGGCAAATCTTCGACGGGAAAAAACAGGAAAGA-T-GTTT 1332 Query 894 -TGACGGGAAAGGGCTGGAAAGAGTTCGCCATGGCAAACGGCTTAAA-AAGCGGTGAAT- 950 | ||| |||||| |||||||| |||| || |||||||||||||| || | | ||| Sbjct 1333 CT--CGG-AAAGGGATGGAAAGATTTCGTTATAGCAAACGGCTTAAAGAA-CAGCAAATC 1388 Query 951 TGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCTATGCTCAGTTTGGTCAATACAC 1010 | ||||| ||||||||| |||||||||| ||||||| ||||||||||||||||| || || Sbjct 1389 T-TTCACTTTGGAGGCAGTTTTGGAGAACGGAACTCATATGCTCAGTTTGGTCAGTATAC 1447 Query 1011 AGTCCACAAATTATAGAAGCCAACAAGGAGAATGTTCAAGAGATAGCGAGAAGGAGTCGT 1070 ||||||||| | |||||||||| |||||||| || |||| ||||||| |||| |||| | Sbjct 1448 AGTCCACAAGTGATAGAAGCCAGCAAGGAGAGTGCTCAAAAGATAGCAAGAAAGAGT--T 1505 Query 1071 CGATTTGTGCTGAACCTAGTAGAGGAAACAAGAAGT-GGAAAGCTACT-AACAACAGAAA 1128 |||| ||| | |||||| ||||||||||| || ||||||| | | ||||||||| | Sbjct 1506 A-ATTTCTGCAGTACCTAGCAGAGGAAACAA-AACCAGGAAAGCCA-TGAACAACAGAGA 1562 Query 1129 GGAGAGGAGAGACTCGTCGTC-AGCAATCCAAAATC-GATATGTGACATTAACACT 1182 | ||||||||| || | || ||||| |||||| | | | |||||||||| |||| Sbjct 1563 CGTGAGGAGAGATTCATT-TCCAGCAAGCCAAAACCAGTT-TGTGACATTATCACT 1616 > Ahg899837 jgi|Araly1|899837|Al_scaffold_0004_487 Length=627 Score = 377 bits (204), Expect = 1e-103 Identities = 266/296 (90%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 1472 AGAGAGGAACGAGAGCGAAATAGAGTGTATCATCGGCGTGGAAAGACCATAGGCGAATAT 1531 |||||||||||||||||||||||||| |||||| || |||||||||||| |||||| ||| Sbjct 610 AGAGAGGAACGAGAGCGAAATAGAGTTTATCATTGGAGTGGAAAGACCAGAGGCGATTAT 551 Query 1532 TTGTGTTTTCCTCTAGAAGGCAATCTGT-AACCACTTGATTCCACCCTGCAACCAAATTG 1590 || | |||| || |||| |||||||| | |||||||||||||||||||| |||||||||| Sbjct 550 TTCTATTTTTCTTTAGACGGCAATCT-TCAACCACTTGATTCCACCCTGTAACCAAATTG 492 Query 1591 TATAGAAGAATGCCCCTCATGTCCCTCAACCTCAAATTCACCGGAAATTCCCTTAGATGA 1650 ||| ||||| |||| |||||||||| |||||||||||||||| ||||||| ||||||| | Sbjct 491 TATTGAAGACTGCCTCTCATGTCCCACAACCTCAAATTCACCTGAAATTCTCTTAGATCA 432 Query 1651 GAA-TCCACGAGTATCGCGTCTACTCCTTCTTTGCGAACCCTATTGGCATCTTCTTCTAT 1709 ||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 431 GAAGT-CACGAGTATCGCGTCTACTCCTTCTTTGTTAACCTTATTGGCATCTTCTTCTAT 373 Query 1710 GGCCCTTTTTTCCTCGTGGTTCAAGAATTCCAACTCCACGATCTGGCTGACAGGTA 1765 ||||||||||||||||||||||||||||||||| ||||| || | ||||| ||||| Sbjct 372 GGCCCTTTTTTCCTCGTGGTTCAAGAATTCCAATTCCACAATGTTGCTGAGAGGTA 317 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66238936055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5