BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24680.2
Length=1765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899838 jgi|Araly1|899838|Al_scaffold_0004_488 935 0.0
Ahg899837 jgi|Araly1|899837|Al_scaffold_0004_487 377 1e-103
> Ahg899838 jgi|Araly1|899838|Al_scaffold_0004_488
Length=2334
Score = 935 bits (506), Expect = 0.0
Identities = 685/771 (89%), Gaps = 14/771 (2%)
Strand=Plus/Plus
Query 692 AGAGATTCAACTT-CACCAAGCCAAAACCGGTTTATGACATTAACACTTACTCATGACAA 750
|||||||| | || || |||||||||||| |||| |||||||| ||||| | |||||||
Sbjct 1570 AGAGATTC-ATTTCCAGCAAGCCAAAACCAGTTTGTGACATTATCACTTTCACATGACAG 1628
Query 751 CCTCATAAAAAGTAGACGGTATCTTCCGTTGTCATTCACAAGAGATAATGGCTTGGACAA 810
||||| |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| |
Sbjct 1629 CCTCAGAAAAGGTAGACAGTATCTTCCATTGTCATTCACAAGAGAAAATGGCTTGGACGA 1688
Query 811 ACCTGGGATGATTTTTCT-GTTGGGCAAA-ACTGGTAGAAAGTGGGAGGCAAATCTTCTA 868
||||||||| || ||| ||| ||||| | ||||| ||||| |||||||| |||||||
Sbjct 1689 ACCTGGGATAATAACTCTGGTT-AGCAAAGA-TGGTACAAAGTTGGAGGCAAGTCTTCTA 1746
Query 869 AGGGAAGCCTCAGGAAGAATTGTTTTGACGGGAAAGGGCTGGAAAGAGTTCGCCATGGCA 928
||||| | ||||| || || | | | |||||||||||||||||||||||||| | |
Sbjct 1747 CGGGAAAACAAAGGAATAA-TG-TGTCTC-GGAAAGGGCTGGAAAGAGTTCGCCATAGAA 1803
Query 929 AACGGCTTAAAAAGCGGTGAATTGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCT 988
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 AACGGCTTAAAAACCGGCGAATTGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCT 1863
Query 989 ATGCTCAGTTTGGTCAATACACAGTCCACAAATTATAGAAGCCAACAAGGAGAATGTTC- 1047
|||||||||||| ||| |||| ||||||||| | |||||||||| |||||||| |||||
Sbjct 1864 ATGCTCAGTTTGCTCAGTACAGAGTCCACAAGTGATAGAAGCCAGCAAGGAGAGTGTTCC 1923
Query 1048 AAGAGATAGCGAGAAGGAGTCGTCGATTTGTGCTGAACCTAGTAGAGGAAACAAGAAGTG 1107
|| |||||||||||| |||||| |||| ||| |||||||| | || ||||||||||
Sbjct 1924 AA-AGATAGCGAGAAAGAGTCG---ATTTCTGCAGAACCTAGCAAAGAAAACAAGAAGAA 1979
Query 1108 GAAAGCTACTAACAACAGAAAGGAGAGGAGAGACTCGTCGTCAGCAATCCAAAATCGATA 1167
|||||| |||| ||||||| |||||||||||||||| || |||||||||||||| |||||
Sbjct 1980 GAAAGCCACTAGCAACAGAGAGGAGAGGAGAGACTCTTCTTCAGCAATCCAAAAGCGATA 2039
Query 1168 TGTGACATTAACACTCACACCAGAAGATGTCAGAGCCTGTACACTAATTCTTCCGAGTCA 1227
||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 2040 TGTGACATTAACACTCACACCAGAAGATGTCAGCGCCTGTAAACTAATTCTTCCAAGTCA 2099
Query 1228 ATTCATGAAAGCTAATGGCATCAACAAGCTTGGGAAGAAAACTTTGTTGGGTCAAAACAG 1287
||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||
Sbjct 2100 ATTCATGAAAGCTAATGGCATTAACAAGCTCGGGAAGATAACTTTGGTGGGTCAAAACAG 2159
Query 1288 AAAGAAGTGGTTTGCATATCTACTGTCAAAAAGTGGATTTGTGGCACTGGGATCTGGTTG 1347
|| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct 2160 AACGAAGTGGTTTGCATATCTACTGTCAAAAAATGGAATTGTGGCTCTGGGATCTGGTTG 2219
Query 1348 GAAAGGTTTCTGTGAAGCTAATGGCGTTAAGACAGGAGAATCATTCAATTTGGAATATAT 1407
||| |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 2220 GAAGGGTTTCTGTGAAGCTAATGGCGTTAAGACAGGGGAGTCATTCACTTTGGAATATAT 2279
Query 1408 TGATGAACAAGACACAACTCCTGTGTTTAAGTTCTGTTCCAACTCCGTAGA 1458
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2280 TGATGAACAAGACACAACTCCTGTGTTTAAGTTCTGGTCCAACTCCGTAGA 2330
Score = 697 bits (377), Expect = 0.0
Identities = 692/836 (83%), Gaps = 54/836 (6%)
Strand=Plus/Plus
Query 359 TATCTTCCACAAGATTTAACAAG-TTCAGTTGGTCTTGAAAGGAAATACCGTGAGATTGT 417
|||||||||||||||||||| || || | |||||||||||||||||| ||||||||||||
Sbjct 823 TATCTTCCACAAGATTTAAC-AGCTTTAATTGGTCTTGAAAGGAAATGCCGTGAGATTGT 881
Query 418 TGTAACAGATGAAAGGGAAAGAAGATCATGGGCGTTGGATCTGAGGTTCAACAAATCATC 477
||||||||||||||||| | |||||||||||| ||||| |||| |||||||||||||||
Sbjct 882 TGTAACAGATGAAAGGG--A-AAGATCATGGGCATTGGAGCTGAAGTTCAACAAATCATC 938
Query 478 TGATACTTTCTACATAAGCCGAGGTTGGAGGAGTTTCTGTGATGAAAACGGTAA-AAAGC 536
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||
Sbjct 939 TGATACTTTCTACATAAGCCGAGGTTGGAGAAGTTTCTGTGATGAAAACGATAAGAAAG- 997
Query 537 CAGGAGGTGTCTTTGTTTTCAAACTAGTTGGAAACAGGGAAACTCCGGTGCTTAGTTTCT 596
| || || ||||||||||||| | |||||||||||||||||||||| ||||| |||||||
Sbjct 998 CTGGCGGCGTCTTTGTTTTCAGATTAGTTGGAAACAGGGAAACTCCAGTGCTCAGTTTCT 1057
Query 597 GTTCCACTGAATCTATCAACGATGGAACACAAGGACATAAGAACAACAAATACAATTGTA 656
||||||||||||||||| | | | | || | ||| ||| ||| || ||||
Sbjct 1058 GTTCCACTGAATCTATC-A--A--G-A-AC-A--ACA-AAG------AAA-AC---TGTA 1096
Query 657 TGGAGCTGAAGAGCAAGAAGAAGCGTATGAGATGTAGAGATTCAACTTCACCAAGCCAAA 716
|||||||| |||| |||||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 1097 TGGAGCTGGAGAGAAAGAAGAAGCATCTGAAATGTATAGATTCAACTTCACCAAGCCAAA 1156
Query 717 ACCGGTTTATGACATTAACACTTACTCATGACAACCTCATAAAAAGTAGACGGTATCTTC 776
|||||||| | |||||| ||||| | ||||||||||||| || | ||| |||| ||||||
Sbjct 1157 ACCGGTTTGTAACATTATCACTTTCACATGACAACCTCAGAACAGGTACACGGCATCTTC 1216
Query 777 CGTTGTCATTCACAAGAGATAATGGCTTGGACAAACCTGGGATGATTTTTCTG-TTGGGC 835
| ||||||| ||||||||||||||||||||||||||||||| || |||| ||| |
Sbjct 1217 CACTGTCATTTGCAAGAGATAATGGCTTGGACAAACCTGGGATAATAACTCTGGTTGA-C 1275
Query 836 AAA-ACTGGTAGAAAGTGGGAGGCAAATCTTCTAAGGGAAGCCTCAGGAA-GAATTGTTT 893
||| | ||||| ||| || |||||||||||| | ||||| |||||| || | ||||
Sbjct 1276 AAAGA-TGGTACAAAAAGGAAGGCAAATCTTCGACGGGAAAAAACAGGAAAGA-T-GTTT 1332
Query 894 -TGACGGGAAAGGGCTGGAAAGAGTTCGCCATGGCAAACGGCTTAAA-AAGCGGTGAAT- 950
| ||| |||||| |||||||| |||| || |||||||||||||| || | | |||
Sbjct 1333 CT--CGG-AAAGGGATGGAAAGATTTCGTTATAGCAAACGGCTTAAAGAA-CAGCAAATC 1388
Query 951 TGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCTATGCTCAGTTTGGTCAATACAC 1010
| ||||| ||||||||| |||||||||| ||||||| ||||||||||||||||| || ||
Sbjct 1389 T-TTCACTTTGGAGGCAGTTTTGGAGAACGGAACTCATATGCTCAGTTTGGTCAGTATAC 1447
Query 1011 AGTCCACAAATTATAGAAGCCAACAAGGAGAATGTTCAAGAGATAGCGAGAAGGAGTCGT 1070
||||||||| | |||||||||| |||||||| || |||| ||||||| |||| |||| |
Sbjct 1448 AGTCCACAAGTGATAGAAGCCAGCAAGGAGAGTGCTCAAAAGATAGCAAGAAAGAGT--T 1505
Query 1071 CGATTTGTGCTGAACCTAGTAGAGGAAACAAGAAGT-GGAAAGCTACT-AACAACAGAAA 1128
|||| ||| | |||||| ||||||||||| || ||||||| | | ||||||||| |
Sbjct 1506 A-ATTTCTGCAGTACCTAGCAGAGGAAACAA-AACCAGGAAAGCCA-TGAACAACAGAGA 1562
Query 1129 GGAGAGGAGAGACTCGTCGTC-AGCAATCCAAAATC-GATATGTGACATTAACACT 1182
| ||||||||| || | || ||||| |||||| | | | |||||||||| ||||
Sbjct 1563 CGTGAGGAGAGATTCATT-TCCAGCAAGCCAAAACCAGTT-TGTGACATTATCACT 1616
> Ahg899837 jgi|Araly1|899837|Al_scaffold_0004_487
Length=627
Score = 377 bits (204), Expect = 1e-103
Identities = 266/296 (90%), Gaps = 4/296 (1%)
Strand=Plus/Minus
Query 1472 AGAGAGGAACGAGAGCGAAATAGAGTGTATCATCGGCGTGGAAAGACCATAGGCGAATAT 1531
|||||||||||||||||||||||||| |||||| || |||||||||||| |||||| |||
Sbjct 610 AGAGAGGAACGAGAGCGAAATAGAGTTTATCATTGGAGTGGAAAGACCAGAGGCGATTAT 551
Query 1532 TTGTGTTTTCCTCTAGAAGGCAATCTGT-AACCACTTGATTCCACCCTGCAACCAAATTG 1590
|| | |||| || |||| |||||||| | |||||||||||||||||||| ||||||||||
Sbjct 550 TTCTATTTTTCTTTAGACGGCAATCT-TCAACCACTTGATTCCACCCTGTAACCAAATTG 492
Query 1591 TATAGAAGAATGCCCCTCATGTCCCTCAACCTCAAATTCACCGGAAATTCCCTTAGATGA 1650
||| ||||| |||| |||||||||| |||||||||||||||| ||||||| ||||||| |
Sbjct 491 TATTGAAGACTGCCTCTCATGTCCCACAACCTCAAATTCACCTGAAATTCTCTTAGATCA 432
Query 1651 GAA-TCCACGAGTATCGCGTCTACTCCTTCTTTGCGAACCCTATTGGCATCTTCTTCTAT 1709
||| | |||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 431 GAAGT-CACGAGTATCGCGTCTACTCCTTCTTTGTTAACCTTATTGGCATCTTCTTCTAT 373
Query 1710 GGCCCTTTTTTCCTCGTGGTTCAAGAATTCCAACTCCACGATCTGGCTGACAGGTA 1765
||||||||||||||||||||||||||||||||| ||||| || | ||||| |||||
Sbjct 372 GGCCCTTTTTTCCTCGTGGTTCAAGAATTCCAATTCCACAATGTTGCTGAGAGGTA 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66238936055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5