BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24690.1
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320274 jgi|Araly1|320274|fgenesh1_pm.C_scaffold_4000331 1332 0.0
Ahg890804 jgi|Araly1|890804|Al_scaffold_0007_2790 213 5e-54
> Ahg320274 jgi|Araly1|320274|fgenesh1_pm.C_scaffold_4000331
Length=2043
Score = 1332 bits (721), Expect = 0.0
Identities = 954/1062 (90%), Gaps = 34/1062 (3%)
Strand=Plus/Plus
Query 363 ACTGCGTCTTCCGATGCAATTCACGAGGGAGAATGGGATTAACAAGCCTGGGAAGATATA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ACTGCGTCTTCCGATGCAATTCACGAGGGAGAATGGGATTAACAAGCCTGGGAAGATATA 182
Query 423 TTTGGTGGGTAAAGATGGTTCTAAGTGGCTTGCAAATCTTCTTTTGGAAAACAACAGAGG 482
|||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 183 TTTGTTGGGTAAAGATGGTTCAAAGTGGCTTGCAAATCTTCTTTCGGAAAACAACAGAGG 242
Query 483 AAGAATGACTTTAGGAGATGGTTGGAAAAGTTTTGTTAAAGCAAACGGTTTAAAGACTGG 542
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 243 AAGAATGACTTTGGGAGATGGCTGGAAAAGTTTTGTTAAAGCAAACGGTTTAAAGACGGG 302
Query 543 TGATACCTATACGTTCAAGTTACTGT-GGGAAGACACAACTCCTGTGCTCAGTTTGTGTT 601
|||||||||||| ||||||||| | | |||||||||||| ||||||||| |||||||| |
Sbjct 303 TGATACCTATACATTCAAGTTA-TATTGGGAAGACACAATTCCTGTGCTTAGTTTGTGCT 361
Query 602 TTGAAGAGTACAACACTGACACAAGAGTAGGAGAAGAGTCTTCGAAAGAGTCTCTTCCCG 661
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 362 CTGAAGAGTACAACACTGACACAAGAGTAGGAGAAGAGTGTTCGAAAGAGTCTCTTCCCA 421
Query 662 CAGAGCCTAGTAGCCAAGAAAAGATCGTTAAAGATGACAACAACAAAGATGAA---A--- 715
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 422 CAGAGCCTAGTAGCCAAGAAAAGATCATTAAAGATGACAACAACAAACATGAATCCAACA 481
Query 716 --G-C-A--GCA-C--ATGGAAGAGAGAGGGTAATCATCTGAGATGCAAAGATTCAACTT 766
| | | ||| | |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 482 AAGACGAAAGCAGCTTATGGAAGAGAGAGGATAATCATCTGAGATGCATAGATTCAACTT 541
Query 767 CACCAAGCCAGAACTGCA-CCTTGACAGTAACAATCACGCCTGATAGTCTCGAACATGGT 825
|||||||| ||||| | | ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 542 CACCAAGCGAGAACCGGAGCCT-GACATTAACAATCACGCCTGATAGTCTCGAACATGGT 600
Query 826 AGACTACGGCTTCCGTTGCAATTCATGACGGAGAATAGCATGAACAAGCCCGGGGAGATA 885
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 601 AGACTACGGCTTCCGTTGCAATTCATGACGGAGAATAACATGAACAAGCCCGGAGAGATA 660
Query 886 ACTCTTTTAGGTACAGATGGTGCAAAGTGGATGGCAAGTCTTCTACTAGaaaaaa-aGGG 944
||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 661 ACTCTTTTAGGTAAAGATGGTGCAAAGTGGATGGCAAGTCTTCTACTAGAAAGAAGAGG- 719
Query 945 AAGAATGAGTTTGGGAAAGGGTTGGAAAGATTTTGCTAAAGCAAATGGCTTAAAGACGGG 1004
||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 720 AAGAATGAGTTTGGGGAAGGGCTGGAAAGATTTTGCTAAAGCAAATGGCGTAAAGACGGG 779
Query 1005 TGATTCCATTACATTGGAGCCAATATGGGAAGACAGGACTCCTGTGCTCA-GTA--TAAA 1061
|||||||| || |||||| ||||||||||||||| ||||||||||||| || | |
Sbjct 780 CGATTCCATCACGTTGGAGTCAATATGGGAAGACACAACTCCTGTGCTCAAGTTGCTTA- 838
Query 1062 GTCTAGCAGTGGTAAAGGGCAAAG-TGAGTTTTCCAAGGAATCTCTTTCCATAAAACCTA 1120
|| ||| | | || | || | | | ||||| || |||||||||||| || ||||||
Sbjct 839 GTATAGAA-TC-TA--G--CAGTGGTCATTTTTCTAAAGAATCTCTTTCCGTAGAACCTA 892
Query 1121 GTAGTGGAAACATGACTAAGAAAGTAGAGAACAACAGAGAAGCAAGCAGAAAGTATCCTC 1180
||||||||||||||||| |||||| ||| || ||||||||| ||||||||||||||||||
Sbjct 893 GTAGTGGAAACATGACTGAGAAAGCAGAAAAAAACAGAGAAACAAGCAGAAAGTATCCTC 952
Query 1181 CTAGAAGTAGAGAATCATCTTCAGCAATCCAAAACCAATTCATGGCATTAACACCT-CTA 1239
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 953 CTAGAAGTAGAGAATCATCTTCAGCAATCGAAAACCAATTCATGGCATTAACACCTTC-A 1011
Query 1240 CGTGATATAGTTAGCCAGGTTGCTCATGATCTTAGCATCGGTGAGGTCATCAATTTCAGA 1299
|||||||| |||||||||| |||||||||||| | || || |||||||||| |||||||
Sbjct 1012 TGTGATATAATTAGCCAGGTCGCTCATGATCTTCGAATTGGCGAGGTCATCATTTTCAGA 1071
Query 1300 CATAAAGGAGATAATATGTTGCGGGTCTCAGATTTGGGATCCAATTGTTGTGGGGTTCAA 1359
||| |||||||||||||||| | ||||||||||||||| ||||||||||||| ||| |
Sbjct 1072 CATGAAGGAGATAATATGTTACAAGTCTCAGATTTGGGACCCAATTGTTGTGGTATTCGA 1131
Query 1360 GATTTACTGGCTCCAAGCAGTAACTATGATCATGACAACATC 1401
||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 1132 GATGTACCGGCTCCAAGCAGCAACAATGATCATGACAACATC 1173
Score = 636 bits (344), Expect = 0.0
Identities = 488/552 (88%), Gaps = 31/552 (6%)
Strand=Plus/Plus
Query 1472 ATGCTCATGACAACTTTGAGCCTCCAAGTAAGAAGAAAGTGAAGAAGAACAATCCAGAAA 1531
||| |||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1157 ATGATCATGACAACATCGAGCATCCGAGTAAGAAGAAAGTGAAGAAGAACAATCCAGAAA 1216
Query 1532 TGGAAGCAGATTATTTATCAGACCACTCTTGTTTTGTATCCCATGTCACAACTTCAAGTC 1591
||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 1217 CAGAAGCAGATTATTTATCAGACCACTCTTGTTCTGTAGCCCATGTCACAACTTCGAGTC 1276
Query 1592 TACACACAAATGCGTTGAGCCTAGAAGTGAAAGAGTCTCTTCCCATAGAGCCTAGCAT-- 1649
||||| ||||||| |||||||||| ||| ||||||||| | ||||||||||||||||
Sbjct 1277 TACACGCAAATGCATTGAGCCTAGCAGTAAAAGAGTCTATAACCATAGAGCCTAGCATAG 1336
Query 1650 -T-A-AAC--C-AA-AT---A-T--C--AG-TG--AA-G--AT-GA--CAACAA-CAA-A 1683
| | ||| | || || | | | || | || | || || || || ||| |
Sbjct 1337 ATGACAACAACAAAGATGAAAGTACCAAAGAAGAAAACGACATAGAGGAAAAAAGCAACA 1396
Query 1684 GAGGAAGACATCATAGAGGAGAACAGCTCATTTGAAAGAGAGAAGAATCATTGGATATGT 1743
| ||| ||| ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1397 -ACGAAAACAACATAGAGGAGAGCAGCTCATTTGAAAGAGAGAAGAATCATCGGATATGT 1455
Query 1744 ATAGATTCAATTTCATCGAGCCAAAACCGATTTCTGACATTAACAATCACACCTGACAGT 1803
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1456 ATAGATTCGATTTCATCAAGCCACAACCGATTTCTGACATTAACAATCACACCTGACAGT 1515
Query 1804 CTCAAACATGGTAGACTGCGTCTTCCACTGCAATTCATGATAGAGAATAGCATGAATAAG 1863
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1516 CTCAAACATGGTAGACTGCGTCTTCCACTGCAATTCATGACGGAGAATAGCATGAATAAG 1575
Query 1864 CCCGGAGAGATAACTGTGTTAGGTAAAGATGGTGCGAAGTGGCTGGTAAGTCTTCTACTG 1923
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1576 CCCGGAGAGATAACCGTGTTAGGTAAAGATGGTGCAAAGTGGCTGGTAAGTCTTCTACTG 1635
Query 1924 GAAAGAAGAGGAAGAATGAGTTTGGATGCTAGCAGTGGACA-AGAGACCAGGGAAGCAGA 1982
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 1636 GAAAGAAGAGGAAGAATGAGTTTGGATGCTAGCAGTGGACACA-AGACAAGGGAAGCAGA 1694
Query 1983 GAAAAACAGAGA 1994
||||||||||||
Sbjct 1695 GAAAAACAGAGA 1706
Score = 460 bits (249), Expect = 2e-128
Identities = 292/313 (93%), Gaps = 1/313 (0%)
Strand=Plus/Plus
Query 2043 AAAAC-GAGATTCATCGTCAGATGTCAAAAACCGATTCCTTACACTAACACTTGCACCTG 2101
||||| |||||||||| |||||| || ||||||||||||||||| |||||||||||||||
Sbjct 1697 AAAACAGAGATTCATCTTCAGATATCGAAAACCGATTCCTTACATTAACACTTGCACCTG 1756
Query 2102 AAGATGTCAAGGATGGTAATTTGCATCTTCCTTGTCAATTCATGAGAATTAATGGCATCA 2161
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1757 AAGATGTCAAGGATGGTAATTTGCATCTTCCAAGTCAATTCATGAGAATTAATGGCATCA 1816
Query 2162 ACAAGCCTGGACAGATAACTTTGTTGGGTAGAGGCGGTATGAAGTGGTTTGCATATTTAC 2221
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1817 ACAAGCCTGGAAAGATAACTTTGTTGGGTAGAGGCGGTTTGAAGTGGTTTGCATATCTAT 1876
Query 2222 TGTCAGGAGATGGAACTGTCGTTGTGGGAAATGGTTGGAAAGGTTTTTGTGAGGCGAATG 2281
||||| ||||||||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 1877 TGTCAAGAGATGGAACTGTCGTTTTGGGAAATGGTTGGAAAGGTTTCTGCGAGGCGAATG 1936
Query 2282 GTGTGATGTTAGGAGAGACTTTTGTTTTGGAATTCATTCCCAAAGATGATACAAATCATG 2341
| ||||||||||||||||||||| ||||||||||| || ||||||| ||| |||||||||
Sbjct 1937 GCGTGATGTTAGGAGAGACTTTTATTTTGGAATTCGTTTCCAAAGAAGATGCAAATCATG 1996
Query 2342 TATTTAAGTTCTA 2354
|||||||||||||
Sbjct 1997 TATTTAAGTTCTA 2009
Score = 241 bits (130), Expect = 2e-62
Identities = 221/264 (84%), Gaps = 10/264 (4%)
Strand=Plus/Plus
Query 700 AACAACAAAGATGAAAGCAGCACA--TGGAAGAGAGAGGGTAATCATCTGAGATGCAAAG 757
||||||| ||| || |||||| || || |||||||| | ||||||| || ||| | ||
Sbjct 1402 AACAACATAGAGGAGAGCAGCTCATTTGAAAGAGAGA-AG-AATCATCGGATATGTATAG 1459
Query 758 ATTCAACTTCACCAAGCCAGAACTGCACCT-TGACAGTAACAATCACGCCTGATAGTCTC 816
|||| | |||| ||||||| ||| | | | ||||| |||||||||| ||||| ||||||
Sbjct 1460 ATTCGATTTCATCAAGCCACAACCG-ATTTCTGACATTAACAATCACACCTGACAGTCTC 1518
Query 817 GAACATGGTAGACTACGGCTTCCGTTGCAATTCATGACGGAGAATAGCATGAACAAGCCC 876
||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1519 AAACATGGTAGACTGCGTCTTCCACTGCAATTCATGACGGAGAATAGCATGAATAAGCCC 1578
Query 877 GGGGAGATAACTCTT-TTAGGTACAGATGGTGCAAAGTGGATGGCAAGTCTTCTACTAGa 935
|| |||||||| | | ||||||| |||||||||||||||| ||| |||||||||||| ||
Sbjct 1579 GGAGAGATAAC-CGTGTTAGGTAAAGATGGTGCAAAGTGGCTGGTAAGTCTTCTACTGGA 1637
Query 936 aaaaa-aGGGAAGAATGAGTTTGG 958
|| || ||| ||||||||||||||
Sbjct 1638 AAGAAGAGG-AAGAATGAGTTTGG 1660
> Ahg890804 jgi|Araly1|890804|Al_scaffold_0007_2790
Length=339
Score = 213 bits (115), Expect = 5e-54
Identities = 182/212 (86%), Gaps = 13/212 (6%)
Strand=Plus/Plus
Query 203 AAACAGGTGCACTGCTTCATCTTCCACAAGGTTTCACTAGCTCAAATGGTAGTAATAGGG 262
|||||| ||||||| | |||||||||||| ||||||||||||||||||| ||| ||
Sbjct 89 AAACAGATGCACTG--T-ATCTTCCACAAGATTTCACTAGCTCAAATGGTCTTAACAGAA 145
Query 263 AATGTAGAAAGAGTCCTAGACCGATTATATCATCATATTCGTCAAGCGAGAAACAGTTTG 322
|| |||| |||||||| |||| ||||||||||||||||||| ||||||||||||| || |
Sbjct 146 AAGGTAGCAAGAGTCCAAGACAGATTATATCATCATATTCGCCAAGCGAGAAACAATTCG 205
Query 323 TAACGTTTACACTTGCACCTGTTGATGGCAGACATTGTAGACTGCGTCTTCCGATGCAAT 382
|||| |||||||||||||||| | | | | |||||||||||||||||||||||||
Sbjct 206 TAACATTTACACTTGCACCTG-T--T----G--A-TGTAGACTGCGTCTTCCGATGCAAT 255
Query 383 TCACGAGGGAGAATGGGATTAACAAGCCTGGG 414
|||| ||||||||||| |||||||||||||||
Sbjct 256 TCACAAGGGAGAATGGAATTAACAAGCCTGGG 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89054992810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5