BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24693.1
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481327 jgi|Araly1|481327|fgenesh2_kg.4__387__AT2G24693.1 405 1e-112
> Ahg481327 jgi|Araly1|481327|fgenesh2_kg.4__387__AT2G24693.1
Length=307
Score = 405 bits (219), Expect = 1e-112
Identities = 280/308 (91%), Gaps = 9/308 (3%)
Strand=Plus/Plus
Query 45 GATATTCAGATTGCATCATCTAGAAACATTTCTAATGACAACCAAGAAAACTTCATCTGT 104
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1 GATATTCTGATTGCATCATCTAGAAACATTTCTAATGGCAACCAAGAAAACTTCATCTCT 60
Query 105 TGTATTACCTTTGTTGCTGGTTTTCGCACTCATCCTTATGCCCATGGTTGCAGGCCAACT 164
| || ||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 61 TTTAATACCTGTGTTGATGGTTTTCGCACTAATCCTTATACCCATGGTTGCAGGCCAACT 120
Query 165 TAAGTCTACATGTCGTATTGCGGAGGCATGGAAAGGCGCAAAGGAATGTAATGCAAAATG 224
|||| |||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||
Sbjct 121 TAAGGCTACATGTCGTATTGCGGAGTTATGTAAAGGTGCAAAGGAATGCAATGCAAAATG 180
Query 225 TGCAGCACTAGGTACGACGAGAGGGGGTGTTTGTCA-AAAATTCCTAGGTGATCTTTACT 283
||||||||||||||| | |||||||||||||||| | |||||||||||||||| ||||||
Sbjct 181 TGCAGCACTAGGTACCAAGAGAGGGGGTGTTTGT-ACAAAATTCCTAGGTGATGTTTACT 239
Query 284 GTTGCTGCTGGGATTAATTCCTAATTAAAATGTACTCTCAAT--A-AA----CAATATGT 336
||||||||||||||||||||||||| |||||||||||||||| | || ||||||||
Sbjct 240 GTTGCTGCTGGGATTAATTCCTAATCAAAATGTACTCTCAATTTACAATGAACAATATGT 299
Query 337 ACTCGCAT 344
||||||||
Sbjct 300 ACTCGCAT 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13392611739
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5