BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24696.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932541 jgi|Araly1|932541|scaffold_400529.1 863 0.0
> Ahg932541 jgi|Araly1|932541|scaffold_400529.1
Length=1273
Score = 863 bits (467), Expect = 0.0
Identities = 668/764 (87%), Gaps = 18/764 (2%)
Strand=Plus/Plus
Query 369 AAAGTTACCAAACCAGGAGAGATTCGTGACTGTAAGACTCGTACCTGACTGTCTTAGAAA 428
|||| |||||| |||| ||||||| |||||||||||| |||||||||| |||| | |||
Sbjct 479 AAAGCTACCAACCCAGAAGAGATTTGTGACTGTAAGAGTCGTACCTGATTGTC-T-CAAA 536
Query 429 C--AAAAGATTGTATCTCTCAAGGCGATTCCTGAAAAATAATGGCTTGGGCGAACCAAAG 486
| ||| |||||||||||||||| ||| ||||||||||||| ||||| ||| |||||
Sbjct 537 CGTTGTAGACTGTATCTCTCAAGGCGGTTCTTGAAAAATAATGGTTTGGGGGAAACAAAG 596
Query 487 ATGGTAACACTAGTGGGAACAGATGGTACGAGGATATTGGCTAATCTTTTACGGGAAAGC 546
|||||||||||| |||||||||||||||| |||| ||||| |||||| ||||||||| |
Sbjct 597 ATGGTAACACTACTGGGAACAGATGGTACAAGGAGGTTGGCAAATCTTGTACGGGAAACC 656
Query 547 ACAGGAAGAATGAGCTTGGGAAGGGGATGGGTAGATTTTGCGAAAGCCAATAGG-TTGAA 605
| ||| ||||||||||||| ||||| ||||| || |||||||||| ||| || |||||
Sbjct 657 AGTGGACGAATGAGCTTGGGTAGGGGTTGGGTTGAGTTTGCGAAAGAAAAT-GGTTTGAA 715
Query 606 GATAGGTGAGTACTTTACACTGGAGTCCATTTGGGAAAATGACT-CTCCTATTCTCAGTT 664
||||||| ||||||||||||||||||||||||||| |||||| | |||||| |||| |
Sbjct 716 GATAGGTCAGTACTTTACACTGGAGTCCATTTGGGCAAATGA-TAGTCCTATCCTCAAAT 774
Query 665 TGTATGGGACAAAT-ACTTCCAAAAGTGATAAAAGGAAGCGTAGAGAGAACTTTCCAGTA 723
||| | | |||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 775 TGTCTAGTACAAATGA-TTCCAAAAGTGATAAAAGGAAGCATAGAGAGAACTTTCCAGTA 833
Query 724 GCTTGTGAGAAAGAGTATGTGTCCACTGAGGCTAGAAATAGAAATGAACCCGAGAAAGAC 783
||| | | ||||||| ||| |||||||||||||| || |||| |||||||||||||||
Sbjct 834 GCTAGCCACAAAGAGTTTGTTTCCACTGAGGCTAGCGATGGAAACGAACCCGAGAAAGAC 893
Query 784 AAGAACACAGAGGAGATGATTAATCAAGCATCACTAAGCGAAAACCGATTAGTGATA--A 841
| ||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |
Sbjct 894 ATGAACACAGAGGAGATGATTAATCAATCATCACTAATCGATAACCGATTAGTGATATTA 953
Query 842 -CACTCGTACCAGAAGATGTCAAAGCCGGTATGCTGCGTCTTCCAAGTCACTTCATGAAA 900
|||||| ||| || |||| ||||||||| |||||| ||||||||||||||||||||||
Sbjct 954 GCACTCGAACCTGAGGATGCCAAAGCCGGAATGCTGTATCTTCCAAGTCACTTCATGAAA 1013
Query 901 GCTAATGGCATAGACAAAGTTGGAAAAATATATATGTTGGGTATAAATGAAATGGAGTGG 960
||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1014 GCTAATGGCATCGACAAAATTGGAAAAATATATATGTTGGGTACAAATGAAATGGAGTGG 1073
Query 961 TGGTGGGGAGATCTATTGACAAGAGATGGAATCGTATCTGTAGGATGTGGTTGGAGATA- 1019
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1074 TGGTGGGGAAATCTATTGACAAGAGATGGAATCGTATCTGTAGGATGTCGTTGGAGATAC 1133
Query 1020 TTTCTGTGAATCTAATGGCGTAAAGATTGGA-AAGTCTTTCACCTTAGAATGTATGTACA 1078
||| ||| ||||||||||||||||||||||| || | ||||| ||||||| |||||| |
Sbjct 1134 TTT-TGTAAATCTAATGGCGTAAAGATTGGACAA-TATTTCAAATTAGAATATATGTATA 1191
Query 1079 AATATGACACAAGGCCCGTATTTAAATTCTGTCCCAAGTCCGGG 1122
| |||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 1192 AGTATGACACAAGGCCGGTACTCAAATT-TGTCCCAAGTCCGGG 1234
Score = 459 bits (248), Expect = 3e-128
Identities = 334/374 (89%), Gaps = 12/374 (3%)
Strand=Plus/Plus
Query 5 TGTTCAACGTCAGCGCCTGTGACATCCGTGACAAACCCATG-CCCAGCAACAATGATATC 63
|||| ||||||||||| |||||||||||||||||||||| | |||||||||| ||| |||
Sbjct 22 TGTTTAACGTCAGCGCTTGTGACATCCGTGACAAACCCA-GCCCCAGCAACATTGAAATC 80
Query 64 AACAAGATCGAT-CAGCTTGAAAGAGTaaaaaaaGTGAGGAAGAACAGTTCACAATCCGA 122
|| ||| ||| | | ||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 81 AAGAAGCTCG-TACTGCTTGAAAGAGAAAAAAAAGTGAGGAAGATCAATTCACAATCCGA 139
Query 123 AGCTGGCT-CTTCTTCATCTGG-CAACTCTTCTTTTGTAGCCCTTGTCAAGGCTTCAAAT 180
|||| | | |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 140 AGCTAG-TACTTCTTCATC-GGATAACTCTTCTTTTGTAGCCCTTGTCAAGGCTTCAAAT 197
Query 181 CTAAAGGAAGATGCACTGTATCTTCCACAAGATTGCACAAGTTCTAATGGTCTAAATAAA 240
||| |||||||| | |||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 198 CTAGAGGAAGATACTCTGTATCTTCCACAAGATTGCACAAGATCTAATGGTCTGAATCGA 257
Query 241 AAATGCCGCAAGATT-TTTCTAACAGATGGAGGG-GATAGATCATGGGAAATGGATCTGA 298
||||||||||||||| ||| |||||||||||||| | |||||||||||||||||| ||||
Sbjct 258 AAATGCCGCAAGATTGTTT-TAACAGATGGAGGGAG-TAGATCATGGGAAATGGAACTGA 315
Query 299 AGTTCGACAAAAACTTAGATAGTTTTTGCATAACCAGAGGTTGGAGACATTTCTGTGACG 358
| ||| | |||||||| | |||||||| |||||| |||||||||||||||||||||||||
Sbjct 316 AATTCAAGAAAAACTTGGGTAGTTTTTACATAACGAGAGGTTGGAGACATTTCTGTGACG 375
Query 359 AAAACGGGAAAAAG 372
||||||| ||||||
Sbjct 376 AAAACGGCAAAAAG 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5