BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24700.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344050 jgi|Araly1|344050|fgenesh1_pg.C_scaffold_4000392 1633 0.0
> Ahg344050 jgi|Araly1|344050|fgenesh1_pg.C_scaffold_4000392
Length=1632
Score = 1633 bits (884), Expect = 0.0
Identities = 1155/1285 (90%), Gaps = 21/1285 (2%)
Strand=Plus/Plus
Query 124 ATGGCTAATCCACTTCTCTATTCTCCGATCAACCCACAATTCTTCCAACCACTTCTTCCC 183
||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGGATCCACCTCTCTATTCTCCGATCAACCCACATTTCTTCCAACCACTTCTTCCC 60
Query 184 GGTTTCACCAACCACCTGGACATTCCTGTGGCGTTCTTCTTGAAGTACTTAGTGGGAA-C 242
||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |
Sbjct 61 GGTTTCACCAACCACCTCGACATTCCAGTGGCGTTCTTCTTGAAGCACTTAGTGGGAAGC 120
Query 243 TAACGTAGGAAAAACGGCTGAGCTCAGATCAGATGCATCGGAGATGACATGGAAAGTGAA 302
||| ||||| ||||||||||| |||||||| ||||| ||||||||||||| ||||||
Sbjct 121 -AACAAAGGAACCACGGCTGAGCTAAGATCAGACGCATCAGAGATGACATGGAGAGTGAA 179
Query 303 GATAGACGGCCGGAGACTCTCTAATGGTTGGGAAGATTTCACAATCGCACATGATCTCCG 362
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||
Sbjct 180 GATAGACGGCCGGAGACTCTCTAAAGGTTGGGAAGATTTCACCGTCGCACATGATCTTCG 239
Query 363 AGTTGGTGACATTGTTGTTTTCAGACAAGAAGGAGAGTTAGTGTTCCATGTCACAGCTTT 422
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 240 AGTTGGTGACATTGTTGTTTTCAGACAAGAAGGAGAGTTAGTGTTCCATGTCTCTGCTTT 299
Query 423 AGGACCAAGTTGCTGTGAGATTCAATACGGAGA-AGAT-ACCCTTGAAGAGGATAAAATT 480
|||||||||||| || |||||||||||| |||| | || ||||| |||||||| |||||
Sbjct 300 AGGACCAAGTTGTTGCGAGATTCAATACAGAGACA-ATTACCCT-GAAGAGGACAAAATA 357
Query 481 GAGAAACTTTGTGGTACGGAGAATGTTTCAAGTAAGAAAAAGAGTCTAAAGAGAGAAGCT 540
||||| ||||||| ||| ||||| |||||||| |||||||| ||| |||||||||| ||
Sbjct 358 GAGAAGCTTTGTGATACAGAGAAAGTTTCAAGAAAGAAAAATAGTTTAAAGAGAGAGGCA 417
Query 541 GAGTCTGCACCAGA-CAATTCACTAGATTCTTGTTTTGTGGCCACTGTCACGGGTTCGAA 599
|| ||||||||||| || ||| |||| ||||||||||||||||||||||| | ||||||
Sbjct 418 GATTCTGCACCAGAACA-TTCGCTAGGCTCTTGTTTTGTGGCCACTGTCACCGCTTCGAA 476
Query 600 TCTAAAGCGCGATACATTGTATATTCCGAAAGAGTTT-GCATTGTCAAATGGTCTGATGA 658
|||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 477 TCTAAAGCGCGATACAGTGTATATTCCGAAAG-GTTTTGCATTGTCAAATCATCTGATGA 535
Query 659 ACAAATATCAGATTGTGTTAATGAATGAAGAAGGAGAATCATGGAAGATAGACTTGAGAC 718
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 536 ACAAATTTCAGATTGTCTTAATGAATGAAGAAGGAGAATCATGGAAAATAGACTTGAGAC 595
Query 719 GCGAGGCATATAATTACGGCCGGTTTTACATGAGAAGAGGCTGGAGAAGTTTCTGTATTG 778
| ||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GTGAGACATATAGTCATGGCCGGTTTTACATGAGAAGAGGCTGGAGAAGTTTCTGTATTG 655
Query 779 CTAATGGGAAGAAACCTGGAGACGTTTTT-GCATTCAAATTGGTCAAAAATGAAGAAACA 837
| |||||||||||||| |||||| | || ||||||||||| ||| ||||||||||||||
Sbjct 656 CGAATGGGAAGAAACCGGGAGAC-TCGTTCGCATTCAAATTAGTCGAAAATGAAGAAACA 714
Query 838 CCTATGATACAGTTGTTCCCTATGACCATTGAAGATTTAGACAAACTTCAGAGTC-TTCC 896
||| || | ||||||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 715 CCTGTGCTCCAGTTGTTCCCTATGACCATTGAAGATCTAGACAAACTTCAGAG-CGTTCC 773
Query 897 AAGACACAAGATTCGAAAAACAGAAGCAGCTCCTTCTTCACCGGACCTTTCTTCTTTTGT 956
|||| | |||| ||| ||| ||||||| ||||||| ||| |||| |||||| |||||
Sbjct 774 AAGAGAAAAGAGTCGGAAAGTAGAAGCACCTCCTTC---ACCAGACCCTTCTTCGTTTGT 830
Query 957 AGCCACTGTCACGGCTTCAAATCTAAGCCGAGATAGACTGTATCTTCCGAAGACGTTCAT 1016
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 831 AGCCACTGTCACGGCTTCAAATCTGAGCCGCGATAGACTGTATCTTCCGAAGACGTTCAT 890
Query 1017 TATGTCAAATGGTTTGTTGAAGAAATTTCAGATGTGTCTAATGAATGAAGAGGGAGAATC 1076
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 891 GATGTCAAATGGTTTGTTGAAGAAATTTCAGATGTGTTTAATGAATGAAGAGGGAGAATC 950
Query 1077 ATGGACGATAGATGTGAAACATGAGGCACATACAGGCCGGTTTTTAACGATAAGAGGTTG 1136
|||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||| ||
Sbjct 951 ATGGACAATAGACATGAAACATGAGGCACATTCAGGCCGGTTTTTAATGATAAGAGGCTG 1010
Query 1137 GAGAAGATTCTGTGTGGCTAATGGGAAGAAACCAGGAGACTTGCTCAAATTCAAATTAGT 1196
|||||| |||||||||||||||||||||||||| ||||||||| || |||||| ||||||
Sbjct 1011 GAGAAGTTTCTGTGTGGCTAATGGGAAGAAACCTGGAGACTTGTTCGAATTCAGATTAGT 1070
Query 1197 CCATAACGAAGAAACACCTGTGCTCCAGTTGTTACCCTTGAACAGTGAAGATCTACACAA 1256
||| || |||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1071 CCAAAATGAAGTAACACCTGTGCTCCAGTTGGTACCCTTGAACAGTGAAGATCTACACAA 1130
Query 1257 ACTTAATCCTAGCAATGACACAAGGCATGGACAGAGTTTAAAAGTTACCAAAAAAGAGTT 1316
|||| | |||| ||||||||||||||| ||| || ||||| ||| |||||||||||||||
Sbjct 1131 ACTTGAGCCTAACAATGACACAAGGCAAGGAAAGTGTTTAGAAGCTACCAAAAAAGAGTT 1190
Query 1317 TCTTGGCATGGAAGCCACAGAAAATGA-GTTTCTTGGGGAAGAAGTTTACTGTAATGACT 1375
|||| | | |||||||| |||| || ||||||||| |||||||||||| |||||||||
Sbjct 1191 TCTTTGTTTACAAGCCACAAAAAA-GAAGTTTCTTGGCGAAGAAGTTTACCGTAATGACT 1249
Query 1376 CCTTTAAAGCTAGCGA-GAAAGATA 1399
|||| ||||||| ||| ||| ||||
Sbjct 1250 CCTTCAAAGCTATCGATGAA-GATA 1273
Score = 549 bits (297), Expect = 2e-155
Identities = 349/374 (93%), Gaps = 4/374 (1%)
Strand=Plus/Plus
Query 1418 CTATCAATGAAGATATAAGGCAAGGACAATGTTCACAAA-CTATTAAACAAGAATATGTT 1476
||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 1259 CTATCGATGAAGATATAAGGAAAGGACAATGTTCA-AAAGCTATTAAACAAGAATATGTT 1317
Query 1477 TCCACAGAAGAGAAAAACTCAACAAGCCAAAACCGATTTGTGACCTTAACACTTACACAT 1536
||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1318 TCCGCAGAAGAGAATAACTCAACAAGCCAAAACCAATTTGTGACCTTAACACTTACACCT 1377
Query 1537 TCAAGTAAACTTAATCTTCCGTTTGAATTCATGAAGCGGAATGGAATCAAAAAGGCGGGG 1596
||||||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||
Sbjct 1378 TCAAGTAAACTTAATCTTCCGGTGGAATTCATGAAGGGGAATGGAATCAACAAGGCGGGG 1437
Query 1597 AAGATAACGATGGTTGATAGATACGATGCAAAATGG-CGTACTTCACTACTGATGGACAA 1655
|||||||| ||| ||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 1438 AAGATAACAATGCTTGATAGATACGATGCAAAATGGCCG-ACGTCACTACTGATGGACAA 1496
Query 1656 GATCGGAACAATGAGTTTAGGAAGAGGTTCAAAAGGTTTCTGCGAGGTTAATGGTGTTGA 1715
|| |||||||||||||||||||||||||||||||||||||| |||||||| || ||| |
Sbjct 1497 GAGAGGAACAATGAGTTTAGGAAGAGGTTCAAAAGGTTTCTGTGAGGTTAACGGCGTTAA 1556
Query 1716 GATGAATGAGTCGTTTATCTTGGAGTTGATTTGGGAAGACACAGTTCCTCTTCTTAAGTT 1775
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1557 GATGAATGAGTCGTTTGTCTTGGAGTTGATATGGGAAGACACAGTTCCTCTTCTTAAGTT 1616
Query 1776 TTGTTCCAAAGTTT 1789
||||||||||||||
Sbjct 1617 TTGTTCCAAAGTTT 1630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5