BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24700.1 Length=1824 Score E Sequences producing significant alignments: (Bits) Value Ahg344050 jgi|Araly1|344050|fgenesh1_pg.C_scaffold_4000392 1633 0.0 > Ahg344050 jgi|Araly1|344050|fgenesh1_pg.C_scaffold_4000392 Length=1632 Score = 1633 bits (884), Expect = 0.0 Identities = 1155/1285 (90%), Gaps = 21/1285 (2%) Strand=Plus/Plus Query 124 ATGGCTAATCCACTTCTCTATTCTCCGATCAACCCACAATTCTTCCAACCACTTCTTCCC 183 ||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGCGGATCCACCTCTCTATTCTCCGATCAACCCACATTTCTTCCAACCACTTCTTCCC 60 Query 184 GGTTTCACCAACCACCTGGACATTCCTGTGGCGTTCTTCTTGAAGTACTTAGTGGGAA-C 242 ||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| | Sbjct 61 GGTTTCACCAACCACCTCGACATTCCAGTGGCGTTCTTCTTGAAGCACTTAGTGGGAAGC 120 Query 243 TAACGTAGGAAAAACGGCTGAGCTCAGATCAGATGCATCGGAGATGACATGGAAAGTGAA 302 ||| ||||| ||||||||||| |||||||| ||||| ||||||||||||| |||||| Sbjct 121 -AACAAAGGAACCACGGCTGAGCTAAGATCAGACGCATCAGAGATGACATGGAGAGTGAA 179 Query 303 GATAGACGGCCGGAGACTCTCTAATGGTTGGGAAGATTTCACAATCGCACATGATCTCCG 362 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || Sbjct 180 GATAGACGGCCGGAGACTCTCTAAAGGTTGGGAAGATTTCACCGTCGCACATGATCTTCG 239 Query 363 AGTTGGTGACATTGTTGTTTTCAGACAAGAAGGAGAGTTAGTGTTCCATGTCACAGCTTT 422 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 240 AGTTGGTGACATTGTTGTTTTCAGACAAGAAGGAGAGTTAGTGTTCCATGTCTCTGCTTT 299 Query 423 AGGACCAAGTTGCTGTGAGATTCAATACGGAGA-AGAT-ACCCTTGAAGAGGATAAAATT 480 |||||||||||| || |||||||||||| |||| | || ||||| |||||||| ||||| Sbjct 300 AGGACCAAGTTGTTGCGAGATTCAATACAGAGACA-ATTACCCT-GAAGAGGACAAAATA 357 Query 481 GAGAAACTTTGTGGTACGGAGAATGTTTCAAGTAAGAAAAAGAGTCTAAAGAGAGAAGCT 540 ||||| ||||||| ||| ||||| |||||||| |||||||| ||| |||||||||| || Sbjct 358 GAGAAGCTTTGTGATACAGAGAAAGTTTCAAGAAAGAAAAATAGTTTAAAGAGAGAGGCA 417 Query 541 GAGTCTGCACCAGA-CAATTCACTAGATTCTTGTTTTGTGGCCACTGTCACGGGTTCGAA 599 || ||||||||||| || ||| |||| ||||||||||||||||||||||| | |||||| Sbjct 418 GATTCTGCACCAGAACA-TTCGCTAGGCTCTTGTTTTGTGGCCACTGTCACCGCTTCGAA 476 Query 600 TCTAAAGCGCGATACATTGTATATTCCGAAAGAGTTT-GCATTGTCAAATGGTCTGATGA 658 |||||||||||||||| ||||||||||||||| |||| |||||||||||| |||||||| Sbjct 477 TCTAAAGCGCGATACAGTGTATATTCCGAAAG-GTTTTGCATTGTCAAATCATCTGATGA 535 Query 659 ACAAATATCAGATTGTGTTAATGAATGAAGAAGGAGAATCATGGAAGATAGACTTGAGAC 718 |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 536 ACAAATTTCAGATTGTCTTAATGAATGAAGAAGGAGAATCATGGAAAATAGACTTGAGAC 595 Query 719 GCGAGGCATATAATTACGGCCGGTTTTACATGAGAAGAGGCTGGAGAAGTTTCTGTATTG 778 | ||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 GTGAGACATATAGTCATGGCCGGTTTTACATGAGAAGAGGCTGGAGAAGTTTCTGTATTG 655 Query 779 CTAATGGGAAGAAACCTGGAGACGTTTTT-GCATTCAAATTGGTCAAAAATGAAGAAACA 837 | |||||||||||||| |||||| | || ||||||||||| ||| |||||||||||||| Sbjct 656 CGAATGGGAAGAAACCGGGAGAC-TCGTTCGCATTCAAATTAGTCGAAAATGAAGAAACA 714 Query 838 CCTATGATACAGTTGTTCCCTATGACCATTGAAGATTTAGACAAACTTCAGAGTC-TTCC 896 ||| || | ||||||||||||||||||||||||||| |||||||||||||||| | |||| Sbjct 715 CCTGTGCTCCAGTTGTTCCCTATGACCATTGAAGATCTAGACAAACTTCAGAG-CGTTCC 773 Query 897 AAGACACAAGATTCGAAAAACAGAAGCAGCTCCTTCTTCACCGGACCTTTCTTCTTTTGT 956 |||| | |||| ||| ||| ||||||| ||||||| ||| |||| |||||| ||||| Sbjct 774 AAGAGAAAAGAGTCGGAAAGTAGAAGCACCTCCTTC---ACCAGACCCTTCTTCGTTTGT 830 Query 957 AGCCACTGTCACGGCTTCAAATCTAAGCCGAGATAGACTGTATCTTCCGAAGACGTTCAT 1016 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 831 AGCCACTGTCACGGCTTCAAATCTGAGCCGCGATAGACTGTATCTTCCGAAGACGTTCAT 890 Query 1017 TATGTCAAATGGTTTGTTGAAGAAATTTCAGATGTGTCTAATGAATGAAGAGGGAGAATC 1076 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 891 GATGTCAAATGGTTTGTTGAAGAAATTTCAGATGTGTTTAATGAATGAAGAGGGAGAATC 950 Query 1077 ATGGACGATAGATGTGAAACATGAGGCACATACAGGCCGGTTTTTAACGATAAGAGGTTG 1136 |||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||| || Sbjct 951 ATGGACAATAGACATGAAACATGAGGCACATTCAGGCCGGTTTTTAATGATAAGAGGCTG 1010 Query 1137 GAGAAGATTCTGTGTGGCTAATGGGAAGAAACCAGGAGACTTGCTCAAATTCAAATTAGT 1196 |||||| |||||||||||||||||||||||||| ||||||||| || |||||| |||||| Sbjct 1011 GAGAAGTTTCTGTGTGGCTAATGGGAAGAAACCTGGAGACTTGTTCGAATTCAGATTAGT 1070 Query 1197 CCATAACGAAGAAACACCTGTGCTCCAGTTGTTACCCTTGAACAGTGAAGATCTACACAA 1256 ||| || |||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1071 CCAAAATGAAGTAACACCTGTGCTCCAGTTGGTACCCTTGAACAGTGAAGATCTACACAA 1130 Query 1257 ACTTAATCCTAGCAATGACACAAGGCATGGACAGAGTTTAAAAGTTACCAAAAAAGAGTT 1316 |||| | |||| ||||||||||||||| ||| || ||||| ||| ||||||||||||||| Sbjct 1131 ACTTGAGCCTAACAATGACACAAGGCAAGGAAAGTGTTTAGAAGCTACCAAAAAAGAGTT 1190 Query 1317 TCTTGGCATGGAAGCCACAGAAAATGA-GTTTCTTGGGGAAGAAGTTTACTGTAATGACT 1375 |||| | | |||||||| |||| || ||||||||| |||||||||||| ||||||||| Sbjct 1191 TCTTTGTTTACAAGCCACAAAAAA-GAAGTTTCTTGGCGAAGAAGTTTACCGTAATGACT 1249 Query 1376 CCTTTAAAGCTAGCGA-GAAAGATA 1399 |||| ||||||| ||| ||| |||| Sbjct 1250 CCTTCAAAGCTATCGATGAA-GATA 1273 Score = 549 bits (297), Expect = 2e-155 Identities = 349/374 (93%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 1418 CTATCAATGAAGATATAAGGCAAGGACAATGTTCACAAA-CTATTAAACAAGAATATGTT 1476 ||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| Sbjct 1259 CTATCGATGAAGATATAAGGAAAGGACAATGTTCA-AAAGCTATTAAACAAGAATATGTT 1317 Query 1477 TCCACAGAAGAGAAAAACTCAACAAGCCAAAACCGATTTGTGACCTTAACACTTACACAT 1536 ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1318 TCCGCAGAAGAGAATAACTCAACAAGCCAAAACCAATTTGTGACCTTAACACTTACACCT 1377 Query 1537 TCAAGTAAACTTAATCTTCCGTTTGAATTCATGAAGCGGAATGGAATCAAAAAGGCGGGG 1596 ||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||| Sbjct 1378 TCAAGTAAACTTAATCTTCCGGTGGAATTCATGAAGGGGAATGGAATCAACAAGGCGGGG 1437 Query 1597 AAGATAACGATGGTTGATAGATACGATGCAAAATGG-CGTACTTCACTACTGATGGACAA 1655 |||||||| ||| ||||||||||||||||||||||| || || ||||||||||||||||| Sbjct 1438 AAGATAACAATGCTTGATAGATACGATGCAAAATGGCCG-ACGTCACTACTGATGGACAA 1496 Query 1656 GATCGGAACAATGAGTTTAGGAAGAGGTTCAAAAGGTTTCTGCGAGGTTAATGGTGTTGA 1715 || |||||||||||||||||||||||||||||||||||||| |||||||| || ||| | Sbjct 1497 GAGAGGAACAATGAGTTTAGGAAGAGGTTCAAAAGGTTTCTGTGAGGTTAACGGCGTTAA 1556 Query 1716 GATGAATGAGTCGTTTATCTTGGAGTTGATTTGGGAAGACACAGTTCCTCTTCTTAAGTT 1775 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1557 GATGAATGAGTCGTTTGTCTTGGAGTTGATATGGGAAGACACAGTTCCTCTTCTTAAGTT 1616 Query 1776 TTGTTCCAAAGTTT 1789 |||||||||||||| Sbjct 1617 TTGTTCCAAAGTTT 1630 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68486260510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5