BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24730.1
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320281 jgi|Araly1|320281|fgenesh1_pm.C_scaffold_4000338 350 1e-95
Ahg899850 jgi|Araly1|899850|Al_scaffold_0004_500 340 6e-93
Ahg314007 jgi|Araly1|314007|fgenesh1_pm.C_scaffold_1002787 119 3e-26
> Ahg320281 jgi|Araly1|320281|fgenesh1_pm.C_scaffold_4000338
Length=1185
Score = 350 bits (189), Expect = 1e-95
Identities = 219/234 (94%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 4 AATGCTGATTTGGCTAGGATTATTAATTCTGATGAGGTTCAGAGTGTGGTTAGACCGATT 63
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 838 AATGCTGATTTGGCTAGGATTATTAATTCGGATGAGGTTCAGAGTGTTGTTAGACCGATT 897
Query 64 GAGAAAGATGTGAAGAGTGCTGTGTTGAAGAAGAATCCTCTTAAGAATTTGAATGTGATG 123
|||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAGATGGACGTGAAGAGAGCTGTGTTGAAGAAGAATCCTCTTAAGAATTTGAATGTGATG 957
Query 124 TTGAAGCTTAACCCTTATGCTAAGACTGTGAGGAGGATGTCTTTGTTGGCTGAAGCTCAG 183
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| ||
Sbjct 958 TTGAAGCTTAACCCTTATGCGAAGACTGCGAGGAGAATGTCTTTGTTGGCTGAAGCTGAG 1017
Query 184 AGAGTTAAGTCGAAAAAGGAGAAGCTCGAGAGGAAGAGGAAACCCATTTCAAAG 237
||||| ||||||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct 1018 AGAGTGAAGTCGAAAAACGAGAAGCTTGAGAGGAAGAGAAAACCCATCTCAAAG 1071
Score = 145 bits (78), Expect = 5e-34
Identities = 106/119 (89%), Gaps = 4/119 (3%)
Strand=Plus/Plus
Query 421 AGGAGAAGGCAATGAAGATCAAAGCAGCAGGAAAAGCATGGTACCAG-ACTATGATATCA 479
||||| ||||||||||||||||||||||||||||| | |||||| || |||||||||||
Sbjct 1070 AGGAGGAGGCAATGAAGATCAAAGCAGCAGGAAAACCGTGGTAC-AGGACTATGATATCG 1128
Query 480 GATAGTGAGACTACACTGACTTTGATAACTTCACAAAGTGGCTCGGTGTCGAACAGTAA 538
|| ||||| ||||||||| ||||| |||||||| |||||||||||||| |||||||||
Sbjct 1129 GACAGTGA--CTACACTGAGTTTGACAACTTCACCAAGTGGCTCGGTGTGGAACAGTAA 1185
> Ahg899850 jgi|Araly1|899850|Al_scaffold_0004_500
Length=573
Score = 340 bits (184), Expect = 6e-93
Identities = 228/249 (92%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 2 TGAATGCTGATTTGGCTAGGATTATTAATTCTGATGAGGTTCAGAGTGTGGTTAGACCGA 61
|||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| ||
Sbjct 272 TGAATGCTGATTTGTCTAGGATTATTTATTCGGATGAGGTTCAGAGTGTGGTTAGACAGA 331
Query 62 TTGAGAAAGATGTGAAGAGTGCTGTGTTGAAGAAGAATCCTCTTAAGAATTTGAATGTGA 121
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TTGAGAAGGATGTGAAGAGAGCTGTGTTGAAGAAGAATCCTCTTAAGAATTTGAATGTGA 391
Query 122 TGTTGAAGCTTAACCCTTATGCTAAGACTGTGAGGAGGATGTCTTTGTTGGCTGAAGCTC 181
|||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||| |
Sbjct 392 TGTTGAAGCTTAACCCGTATGCGAAGACTGCGAGAAGGATGTCTTTGTTGGCTGAAGATG 451
Query 182 AGAGAGTTAAGTCGAAAAAGGAGAAGCTCGAGAGGAAGAGGAAA-CCCATTTCAAAGAT- 239
||||||| |||||||||| ||||||||||||||||||||| | | ||||| ||||||||
Sbjct 452 AGAGAGTAAAGTCGAAAAGGGAGAAGCTCGAGAGGAAGAG-ACAGCCCATCTCAAAGATT 510
Query 240 ATTTGAATT 248
| | |||||
Sbjct 511 AATAGAATT 519
> Ahg314007 jgi|Araly1|314007|fgenesh1_pm.C_scaffold_1002787
Length=732
Score = 119 bits (64), Expect = 3e-26
Identities = 103/121 (85%), Gaps = 6/121 (5%)
Strand=Plus/Plus
Query 70 GATGTGAAGAGTGCTGTG-TTGAAGAAGAATCCTCTT-AAGAATTTGAATGTGAT-GTTG 126
|||||||| || | |||| || | |||||||||| || ||||||||||||||||| |||
Sbjct 526 GATGTGAAAAGAGGTGTGATT-ATGAAGAATCCT-TTGAAGAATTTGAATGTGATGGTT- 582
Query 127 AAGCTTAACCCTTATGCTAAGACTGTGAGGAGGATGTCTTTGTTGGCTGAAGCTCAGAGA 186
||||||| | ||| |||||||| | || || ||||||||||||||||||||||||||||
Sbjct 583 AAGCTTAGTCATTACGCTAAGACCGCGAAGATGATGTCTTTGTTGGCTGAAGCTCAGAGA 642
Query 187 G 187
|
Sbjct 643 G 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24856141884
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5