BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24748.1 Length=772 Score E Sequences producing significant alignments: (Bits) Value Ahg932960 jgi|Araly1|932960|scaffold_400948.1 778 0.0 Ahg932837 jgi|Araly1|932837|scaffold_400825.1 710 0.0 Ahg932560 jgi|Araly1|932560|scaffold_400548.1 496 1e-139 Ahg932575 jgi|Araly1|932575|scaffold_400563.1 490 6e-138 Ahg929910 jgi|Araly1|929910|scaffold_302367.1 311 5e-84 > Ahg932960 jgi|Araly1|932960|scaffold_400948.1 Length=1648 Score = 778 bits (421), Expect = 0.0 Identities = 657/766 (86%), Gaps = 36/766 (5%) Strand=Plus/Plus Query 4 ATTCCTTTAGCCTTCTTCTTTGAGAATATATAAGGAAGAAATGAGCAGAAGACGGCAGAG 63 |||||| | || || |||||| |||||||| ||||||||||||||||||||||||| ||| Sbjct 78 ATTCCTGTGGCTTTTTTCTTTAAGAATATAGAAGGAAGAAATGAGCAGAAGACGGCGGAG 137 Query 64 TTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACTTACC 123 ||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 138 TTAAGATCAGACGCATCGAACAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACTTACA 197 Query 124 AACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACATCATTGTTTTC 183 |||||||||| ||| |||||||||||||||||| ||||| | || ||||||||||||||| Sbjct 198 AACGGTTGGAGAGACTTTGCTCTCGCACATGATCTTCGAATCGGTGACATCATTGTTTTC 257 Query 184 AGACAAGAGAGTGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTTGTTGTGA--TT 241 ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || Sbjct 258 AGACAAGAGAGAGACATGACTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTGAGATT 317 Query 242 CAATATGTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAAGGAAAAAGAAA 301 ||||||||||| | |||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 318 CAATATGTGTCTTGTTTAGACAACCAGAACAACCGCGGGACGATTCAAAGGAAGAAGAAA 377 Query 302 GAAGCAGAGTCTTCACTAGATCTCTCTTGTTTTGTGGCTAATGTCACGCCTTCGAATCTA 361 |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 378 AAAGCCGAGTCTTCACTAGATCTCTCTTGTTTCGTGGCTAATGTCACTCCTTCGAATCTA 437 Query 362 C---A--A-TC--T---TC--C-ATTGAGTTTTGTGAGG-CAAATGGTCTAGACAAAAGG 406 | | | || | || | | || ||||||||||| |||||||||||||||| || Sbjct 438 CGTTATGACTCACTGAATCTTCCAATGTGTTTTGTGAGGGCAAATGGTCTAGACAATAGA 497 Query 407 TGTGGAGAGATGATTCTGATCAACGAAAAAGGCAGATCATGGACTGTAGACTT-GAAACG 465 ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| Sbjct 498 TGTGGCGAGATGATTCTGATCAACGAAAAGGGCAGATCATGGACTGTAG-CTTTGAAACG 556 Query 466 AAAGAACTCATGTCCAACTACTTACATCAAACGAGGATGGGGAAGTTTCTGTAATGCCAA 525 |||||| |||||| ||||||||||||||| |||||||||| ||| |||||||||||| || Sbjct 557 AAAGAAATCATGTGCAACTACTTACATCAGACGAGGATGGAGAAATTTCTGTAATGCTAA 616 Query 526 TGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTTCCAAAGAGGTGGAACTCCAGG 585 |||| ||||||||||||||||||| | |||||||||| || |||| || ||||||| || Sbjct 617 TGGACTTAGAGCTGGAAGTTTCTTCACTTTCAAACTGATCGAAAGGGGAGGAACTCTGGG 676 Query 586 TTTACGTTCATCCCACAGAGAGGTAGAAGAAGAAGCTATTACAATAGAGTATCTTTCCA- 644 |||||||| | ||||||||||| |||||||||||| || | ||||||| | | ||| Sbjct 677 TTTACGTTTAGCCCACAGAGAGCTAGAAGAAGAAGGTAATGCAATAGACAA-CAA-CCAA 734 Query 645 --CA-GA-AC-CTGACCGT-AA--C-CAAGACGAGAGAAGCTCACAGATATGGAAAGTTT 695 || || | || || || || | ||| | | | || || ||||||||||| || Sbjct 735 GACAAGAGAAGCTCAC-GTGAATGCACAAAAAAAAA-AATCTT---GATATGGAAAGCTT 789 Query 696 CTTCTTCACCATCTCAAAACCGTTTTATGACAGTAACTCTTAAACC 741 |||||| ||||||||||||||||||| ||||||||||||||| ||| Sbjct 790 CTTCTTTACCATCTCAAAACCGTTTTGTGACAGTAACTCTTACACC 835 > Ahg932837 jgi|Araly1|932837|scaffold_400825.1 Length=1042 Score = 710 bits (384), Expect = 0.0 Identities = 521/585 (89%), Gaps = 17/585 (3%) Strand=Plus/Plus Query 54 GACGGCAGAGTTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 113 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 74 GACGGCAGAGTTAAGATCAGACGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 133 Query 114 GAGACTTACCAACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACAT 173 |||||| ||||||||||||| |||||||||||||||||||||| ||||| | |||||||| Sbjct 134 GAGACTCACCAACGGTTGGACAGAGTTTGCTCTCGCACATGATCTTCGAATCGGCGACAT 193 Query 174 CATTGTTTTCAGACAAGAGAG-TGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTT 232 ||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| Sbjct 194 CATTGTTTTCAGACAAGAGAGATC-CATGACTTTCCACGTTACAATGTTGGGACCTAGTT 252 Query 233 GTTGTGA--TTCAATATGTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAA 290 ||| ||| ||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 253 GTTATGAGATTCAATATGTGTCTTGTCTAGACAACCAGAACAACCTCGGGAAGATTCAAA 312 Query 291 GGAAAAAGAAAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTTGTGGCTAATGTCACGC 350 |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 313 GGAAGAAGAAAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTCATTGCTAATGTCACGC 372 Query 351 CTTCGAATCTACAATCTTCCATTGAGTTT-TGTGAGGCAAATGGTCTAGACAAAAGGTGT 409 |||||||||||| | | || || | || || ||||||||||||||||||| ||| Sbjct 373 CTTCGAATCTACG-T-T---AT-GACTCACTG-GA--CAAATGGTCTAGACAAAAGATGT 423 Query 410 GGAGAGATGATTCTGATCAACGAAAAAGGCAGATCATGGACTGTAGACTT-GAAACGAAA 468 || || ||||||||||||||||||| || |||||||||||||||| ||| ||||||||| Sbjct 424 GGCGATATGATTCTGATCAACGAAAG-GGTAGATCATGGACTGTAG-CTTTGAAACGAAA 481 Query 469 GAACTCATGTCCAACTACTTACATCAAACGAGGATGGGGAAGTTTCTGTAATGCCAATGG 528 ||| |||||| |||||||||||||| |||||||||| ||||||||||| |||| ||||| Sbjct 482 GAAATCATGTGGAACTACTTACATCAGACGAGGATGGAGAAGTTTCTGTCATGCTAATGG 541 Query 529 ATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTTCCAAAGAGGTGGAACTCCAGGTTT 588 | ||||||||||||||||||| | |||||||||| || |||| || ||||||| ||||| Sbjct 542 ACTTAGAGCTGGAAGTTTCTTCACTTTCAAACTGATCGAAAGGGGAGGAACTCTGGGTTT 601 Query 589 ACGTTCATCCCACAGAGAGGTAGAAGAAGAAGCTATTACAATAGA 633 ||||| ||||||||||||| |||| |||||||||| | ||||||| Sbjct 602 ACGTTTATCCCACAGAGAGCTAGATGAAGAAGCTAATGCAATAGA 646 > Ahg932560 jgi|Araly1|932560|scaffold_400548.1 Length=1828 Score = 496 bits (268), Expect = 1e-139 Identities = 537/660 (81%), Gaps = 45/660 (7%) Strand=Plus/Plus Query 1 ACAATTCCTTTAGCCTTCTTCTTTG-AGAATATATAAGGAAGAAATGAGCAGAAGACGGC 59 ||||||||| | || |||||| ||| |||||||| |||||||| |||||||||||||||| Sbjct 264 ACAATTCCTGTGGCTTTCTTC-TTGAAGAATATAGAAGGAAGACATGAGCAGAAGACGGC 322 Query 60 AGAGTTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACT 119 ||| | || ||||| || || |||| ||| ||| ||||||| || ||||| |||||||| Sbjct 323 GGAGCTGAGATCAGACGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGACT 382 Query 120 TACCAACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACATCATTGT 179 || ||||||||||||||||||||||| | |||||| ||||| | || ||||| | || Sbjct 383 CACTGACGGTTGGAAAGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTGGT 442 Query 180 -TTTCAGACAAGAGAGTGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTTGTTGT- 237 ||| ||||||||||| | ||| |||||||||||||||||| ||||||||||||||| Sbjct 443 GTTT-AGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTG 501 Query 238 -GATTCAATAT-GTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAAGGAAA 295 |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||| Sbjct 502 AGATTCAATATGGT-TCGTGTTTAGACAACAAGAACAACCTCGGGAAGATTCAAAGGAAG 560 Query 296 AAGAA---A-GAAG-----CAGAGTCTTC---ACTAGATCTCT-CTTGTTTTGTGGCTAA 342 ||||| | |||| |||||||||| |||||||| || |||||||||||||||| Sbjct 561 AAGAATCCAAGAAGAGAAACAGAGTCTTCGTCACTAGATC-CTTCTTGTTTTGTGGCTAA 619 Query 343 TGTCACGCCTTCGAATCTAC---A--A-----T----CTTCCATTGA-GTTTTGTGAGGC 387 ||||||| ||||| ||||| | | | |||||| || ||||||||||| Sbjct 620 TGTCACGGTTTCGAGTCTACGCGATGACAGACTGAATCTTCCAA-GAAGTTTTGTGAGGG 678 Query 388 AAA-TGGTCTAGACAAAAGGTGTGGAGAGAT-GATTCTGATCAACGAAAAAGGCAGATCA 445 ||| ||||||||||| ||| ||||||||||| | ||||||| || ||||| |||||| || Sbjct 679 AAAATGGTCTAGACACAAGATGTGGAGAGATTG-TTCTGATGAATGAAAAGGGCAGAACA 737 Query 446 TGGACTGTAGACTTGAAACGAAAGAACTCATGTCC-AACTACTTACATCAAACGAGGATG 504 |||||| |||| |||||| |||| || |||| | ||||||||||||||||| |||||| Sbjct 738 TGGACTTTAGATTTGAAAGGAAACAAATCATA-CAGAACTACTTACATCAAACAAGGATG 796 Query 505 GGGAAGTTTCTGTAATGCCAATGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTT 564 | ||||||||||| ||||||||||| |||||||||||||| |||| | ||| |||||| | Sbjct 797 GAGAAGTTTCTGTCATGCCAATGGACTTAGAGCTGGAAGTATCTTCACTTTTAAACTGAT 856 Query 565 CCAAAGAGGTGGAACTCCAGGTT-TACGTTCATCCCACAGAGAGGTAGAAGAAGAAGCTA 623 ||||| ||| |||||| |||| |||||| |||| || |||| ||| ||| |||||| Sbjct 857 CCAAAAAGGAAAAACTCC-GGTTCTACGTTTGTCCCCCAAAGAGCCAGAGGAACAAGCTA 915 > Ahg932575 jgi|Araly1|932575|scaffold_400563.1 Length=1936 Score = 490 bits (265), Expect = 6e-138 Identities = 538/662 (81%), Gaps = 49/662 (7%) Strand=Plus/Plus Query 1 ACAATTCCTTTAGCCTTCTTCTTTG-AGAATATATAAGGAAGAAATGAGCAGAAGACGGC 59 ||||||||| | || |||||| ||| |||||||| |||||||| |||||||||||||||| Sbjct 438 ACAATTCCTGTGGCTTTCTTC-TTGAAGAATATAGAAGGAAGACATGAGCAGAAGACGGC 496 Query 60 AGAGTTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACT 119 ||| | || ||||| || || |||| ||| ||| ||||||| || ||||| |||||||| Sbjct 497 GGAGCTGAGATCAGACGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGACT 556 Query 120 TACCAACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACATCATTGT 179 || ||||||||||||||||||||||| | |||||| ||||| | || ||||| | || Sbjct 557 CACTGACGGTTGGAAAGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTGGT 616 Query 180 -TTTCAGACAAGAGAGTGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTTGTTGT- 237 ||| ||||||||||| | ||| |||||||||||||||||| ||||||||||||||| Sbjct 617 GTTT-AGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTG 675 Query 238 -GATTCAATAT-GTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAAGGAAA 295 |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||| Sbjct 676 AGATTCAATATGGT-TCGTGTTTAGACAACAAGAACAACCTCGGGAAGATTCAAAGGAAG 734 Query 296 AAGAA---A-GAAG-----CAGAGTCTTC---ACTAGATCTCT-CTTGTTTTGTGGCTAA 342 ||||| | |||| |||||||||| |||||||| || |||||||||||||||| Sbjct 735 AAGAATCCAAGAAGAGAAACAGAGTCTTCGTCACTAGATC-CTTCTTGTTTTGTGGCTAA 793 Query 343 TGTCACGCCTTCGAATCTAC---A--A-----T----CTTCCATTGA-GTTTTGTGAGGC 387 ||||||| ||||| ||||| | | | |||||| || ||||||||||| Sbjct 794 TGTCACGGTTTCGAGTCTACGCGATGACAGACTGAATCTTCCAA-GAAGTTTTGTGAGGG 852 Query 388 AAA-TGGTCTAGACAAAAGGTGTGGAGAGAT-GATTCTGATCAACGAAAAAGGCAGATCA 445 ||| ||||||||||||||| |||| |||||| | ||||||| || ||||| |||||| || Sbjct 853 AAAATGGTCTAGACAAAAGATGTGTAGAGATTG-TTCTGATGAATGAAAAGGGCAGAACA 911 Query 446 TGGACTGTAGACTTGAAACGAAAGAACTCATGTCC-AACTACTTACATCAAACGAGGATG 504 |||||| |||| |||||| |||| || |||| | |||||||||||||||||||||||| Sbjct 912 TGGACTTTAGATTTGAAAGGAAACAAATCATA-CGGAACTACTTACATCAAACGAGGATG 970 Query 505 GGGAAGTTTCTGTAATGCCAATGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTT 564 | |||||||||| ||||||||||| |||||||||||||| |||| | |||||||||| | Sbjct 971 GAGAAGTTTCTGCCATGCCAATGGACTTAGAGCTGGAAGTATCTTCACTTTCAAACTGAT 1030 Query 565 CCAAAGAGGTGGAACTCCAGGTT-TACGTTCAT-C-CCACAGAGAGGTAGAAGAAGAAGC 621 | ||| ||| |||||| |||| |||||| | | ||| | |||| ||||||| |||| Sbjct 1031 CAAAAAAGGAAAAACTCC-GGTTCTACGTTTGTTCTCCA-A-AGAGCCAGAAGAACAAGC 1087 Query 622 TA 623 || Sbjct 1088 TA 1089 > Ahg929910 jgi|Araly1|929910|scaffold_302367.1 Length=1031 Score = 311 bits (168), Expect = 5e-84 Identities = 288/343 (84%), Gaps = 20/343 (6%) Strand=Plus/Plus Query 296 AAGA-AAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTTGTGGCTAATGTCACGCCTTC 354 |||| |||||||||||||||||||||||||||||| ||| |||||||||||||| |||| Sbjct 242 AAGAGAAGAAGCAGAGTCTTCACTAGATCTCTCTTATTTCGTGGCTAATGTCACATCTTC 301 Query 355 GAAT---C-T-A---C--A---A-TCTTCCATTGAGTTTTGTGAGG-CAAATGGTCTAGA 399 |||| | | | | | | ||||||| |||| ||||||||| |||||||| |||| Sbjct 302 GAATATACGTTATGACTCACTGAATCTTCCAATGAGATTTGTGAGGGCAAATGGTGTAGA 361 Query 400 CAAAAGGTGTGGAGAGATGATTCTGATCAACGAAAAAGGCAGATCATGGACTGTAGACTT 459 || ||| |||||||||||||||||||| |||||||| |||| ||||||||||||||| || Sbjct 362 CACAAGATGTGGAGAGATGATTCTGATTAACGAAAATGGCAAATCATGGACTGTAGATTT 421 Query 460 GAAACGAAAGAACTCATGTCCAACTACTTACATCAAACGAGGATGGGGAAGTTTCTGTAA 519 |||||||||||| |||||| |||||||||||| | |||||||||| ||||||| ||| | Sbjct 422 GAAACGAAAGAAATCATGTGGAACTACTTACATTAGACGAGGATGGAGAAGTTTTTGTCA 481 Query 520 TGCCAATGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTTCCAAAGAGGTGGAAC 579 ||| |||||| ||||||||||||||| ||| | ||||||||| |||||||||| | ||| Sbjct 482 TGCTAATGGACTTAGAGCTGGAAGTTCCTTCACTTTCAAACTCATCCAAAGAGGAGCAAC 541 Query 580 TCCAG-GTTTACGTTCATCCCAC-AGAGAGGTAGAAGAAGAAG 620 | | ||||||||| ||||| | |||||| || ||||||||| Sbjct 542 TTT-GTGTTTACGTTTATCCC-CTAGAGAGCTAAAAGAAGAAG 582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28477818999 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5