BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24748.1
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932960 jgi|Araly1|932960|scaffold_400948.1 778 0.0
Ahg932837 jgi|Araly1|932837|scaffold_400825.1 710 0.0
Ahg932560 jgi|Araly1|932560|scaffold_400548.1 496 1e-139
Ahg932575 jgi|Araly1|932575|scaffold_400563.1 490 6e-138
Ahg929910 jgi|Araly1|929910|scaffold_302367.1 311 5e-84
> Ahg932960 jgi|Araly1|932960|scaffold_400948.1
Length=1648
Score = 778 bits (421), Expect = 0.0
Identities = 657/766 (86%), Gaps = 36/766 (5%)
Strand=Plus/Plus
Query 4 ATTCCTTTAGCCTTCTTCTTTGAGAATATATAAGGAAGAAATGAGCAGAAGACGGCAGAG 63
|||||| | || || |||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 78 ATTCCTGTGGCTTTTTTCTTTAAGAATATAGAAGGAAGAAATGAGCAGAAGACGGCGGAG 137
Query 64 TTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACTTACC 123
||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 138 TTAAGATCAGACGCATCGAACAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACTTACA 197
Query 124 AACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACATCATTGTTTTC 183
|||||||||| ||| |||||||||||||||||| ||||| | || |||||||||||||||
Sbjct 198 AACGGTTGGAGAGACTTTGCTCTCGCACATGATCTTCGAATCGGTGACATCATTGTTTTC 257
Query 184 AGACAAGAGAGTGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTTGTTGTGA--TT 241
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 258 AGACAAGAGAGAGACATGACTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTGAGATT 317
Query 242 CAATATGTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAAGGAAAAAGAAA 301
||||||||||| | |||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 318 CAATATGTGTCTTGTTTAGACAACCAGAACAACCGCGGGACGATTCAAAGGAAGAAGAAA 377
Query 302 GAAGCAGAGTCTTCACTAGATCTCTCTTGTTTTGTGGCTAATGTCACGCCTTCGAATCTA 361
|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 378 AAAGCCGAGTCTTCACTAGATCTCTCTTGTTTCGTGGCTAATGTCACTCCTTCGAATCTA 437
Query 362 C---A--A-TC--T---TC--C-ATTGAGTTTTGTGAGG-CAAATGGTCTAGACAAAAGG 406
| | | || | || | | || ||||||||||| |||||||||||||||| ||
Sbjct 438 CGTTATGACTCACTGAATCTTCCAATGTGTTTTGTGAGGGCAAATGGTCTAGACAATAGA 497
Query 407 TGTGGAGAGATGATTCTGATCAACGAAAAAGGCAGATCATGGACTGTAGACTT-GAAACG 465
||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 498 TGTGGCGAGATGATTCTGATCAACGAAAAGGGCAGATCATGGACTGTAG-CTTTGAAACG 556
Query 466 AAAGAACTCATGTCCAACTACTTACATCAAACGAGGATGGGGAAGTTTCTGTAATGCCAA 525
|||||| |||||| ||||||||||||||| |||||||||| ||| |||||||||||| ||
Sbjct 557 AAAGAAATCATGTGCAACTACTTACATCAGACGAGGATGGAGAAATTTCTGTAATGCTAA 616
Query 526 TGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTTCCAAAGAGGTGGAACTCCAGG 585
|||| ||||||||||||||||||| | |||||||||| || |||| || ||||||| ||
Sbjct 617 TGGACTTAGAGCTGGAAGTTTCTTCACTTTCAAACTGATCGAAAGGGGAGGAACTCTGGG 676
Query 586 TTTACGTTCATCCCACAGAGAGGTAGAAGAAGAAGCTATTACAATAGAGTATCTTTCCA- 644
|||||||| | ||||||||||| |||||||||||| || | ||||||| | | |||
Sbjct 677 TTTACGTTTAGCCCACAGAGAGCTAGAAGAAGAAGGTAATGCAATAGACAA-CAA-CCAA 734
Query 645 --CA-GA-AC-CTGACCGT-AA--C-CAAGACGAGAGAAGCTCACAGATATGGAAAGTTT 695
|| || | || || || || | ||| | | | || || ||||||||||| ||
Sbjct 735 GACAAGAGAAGCTCAC-GTGAATGCACAAAAAAAAA-AATCTT---GATATGGAAAGCTT 789
Query 696 CTTCTTCACCATCTCAAAACCGTTTTATGACAGTAACTCTTAAACC 741
|||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 790 CTTCTTTACCATCTCAAAACCGTTTTGTGACAGTAACTCTTACACC 835
> Ahg932837 jgi|Araly1|932837|scaffold_400825.1
Length=1042
Score = 710 bits (384), Expect = 0.0
Identities = 521/585 (89%), Gaps = 17/585 (3%)
Strand=Plus/Plus
Query 54 GACGGCAGAGTTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 113
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 74 GACGGCAGAGTTAAGATCAGACGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 133
Query 114 GAGACTTACCAACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACAT 173
|||||| ||||||||||||| |||||||||||||||||||||| ||||| | ||||||||
Sbjct 134 GAGACTCACCAACGGTTGGACAGAGTTTGCTCTCGCACATGATCTTCGAATCGGCGACAT 193
Query 174 CATTGTTTTCAGACAAGAGAG-TGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTT 232
||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct 194 CATTGTTTTCAGACAAGAGAGATC-CATGACTTTCCACGTTACAATGTTGGGACCTAGTT 252
Query 233 GTTGTGA--TTCAATATGTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAA 290
||| ||| ||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 253 GTTATGAGATTCAATATGTGTCTTGTCTAGACAACCAGAACAACCTCGGGAAGATTCAAA 312
Query 291 GGAAAAAGAAAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTTGTGGCTAATGTCACGC 350
|||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 313 GGAAGAAGAAAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTCATTGCTAATGTCACGC 372
Query 351 CTTCGAATCTACAATCTTCCATTGAGTTT-TGTGAGGCAAATGGTCTAGACAAAAGGTGT 409
|||||||||||| | | || || | || || ||||||||||||||||||| |||
Sbjct 373 CTTCGAATCTACG-T-T---AT-GACTCACTG-GA--CAAATGGTCTAGACAAAAGATGT 423
Query 410 GGAGAGATGATTCTGATCAACGAAAAAGGCAGATCATGGACTGTAGACTT-GAAACGAAA 468
|| || ||||||||||||||||||| || |||||||||||||||| ||| |||||||||
Sbjct 424 GGCGATATGATTCTGATCAACGAAAG-GGTAGATCATGGACTGTAG-CTTTGAAACGAAA 481
Query 469 GAACTCATGTCCAACTACTTACATCAAACGAGGATGGGGAAGTTTCTGTAATGCCAATGG 528
||| |||||| |||||||||||||| |||||||||| ||||||||||| |||| |||||
Sbjct 482 GAAATCATGTGGAACTACTTACATCAGACGAGGATGGAGAAGTTTCTGTCATGCTAATGG 541
Query 529 ATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTTCCAAAGAGGTGGAACTCCAGGTTT 588
| ||||||||||||||||||| | |||||||||| || |||| || ||||||| |||||
Sbjct 542 ACTTAGAGCTGGAAGTTTCTTCACTTTCAAACTGATCGAAAGGGGAGGAACTCTGGGTTT 601
Query 589 ACGTTCATCCCACAGAGAGGTAGAAGAAGAAGCTATTACAATAGA 633
||||| ||||||||||||| |||| |||||||||| | |||||||
Sbjct 602 ACGTTTATCCCACAGAGAGCTAGATGAAGAAGCTAATGCAATAGA 646
> Ahg932560 jgi|Araly1|932560|scaffold_400548.1
Length=1828
Score = 496 bits (268), Expect = 1e-139
Identities = 537/660 (81%), Gaps = 45/660 (7%)
Strand=Plus/Plus
Query 1 ACAATTCCTTTAGCCTTCTTCTTTG-AGAATATATAAGGAAGAAATGAGCAGAAGACGGC 59
||||||||| | || |||||| ||| |||||||| |||||||| ||||||||||||||||
Sbjct 264 ACAATTCCTGTGGCTTTCTTC-TTGAAGAATATAGAAGGAAGACATGAGCAGAAGACGGC 322
Query 60 AGAGTTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACT 119
||| | || ||||| || || |||| ||| ||| ||||||| || ||||| ||||||||
Sbjct 323 GGAGCTGAGATCAGACGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGACT 382
Query 120 TACCAACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACATCATTGT 179
|| ||||||||||||||||||||||| | |||||| ||||| | || ||||| | ||
Sbjct 383 CACTGACGGTTGGAAAGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTGGT 442
Query 180 -TTTCAGACAAGAGAGTGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTTGTTGT- 237
||| ||||||||||| | ||| |||||||||||||||||| |||||||||||||||
Sbjct 443 GTTT-AGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTG 501
Query 238 -GATTCAATAT-GTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAAGGAAA 295
|||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 502 AGATTCAATATGGT-TCGTGTTTAGACAACAAGAACAACCTCGGGAAGATTCAAAGGAAG 560
Query 296 AAGAA---A-GAAG-----CAGAGTCTTC---ACTAGATCTCT-CTTGTTTTGTGGCTAA 342
||||| | |||| |||||||||| |||||||| || ||||||||||||||||
Sbjct 561 AAGAATCCAAGAAGAGAAACAGAGTCTTCGTCACTAGATC-CTTCTTGTTTTGTGGCTAA 619
Query 343 TGTCACGCCTTCGAATCTAC---A--A-----T----CTTCCATTGA-GTTTTGTGAGGC 387
||||||| ||||| ||||| | | | |||||| || |||||||||||
Sbjct 620 TGTCACGGTTTCGAGTCTACGCGATGACAGACTGAATCTTCCAA-GAAGTTTTGTGAGGG 678
Query 388 AAA-TGGTCTAGACAAAAGGTGTGGAGAGAT-GATTCTGATCAACGAAAAAGGCAGATCA 445
||| ||||||||||| ||| ||||||||||| | ||||||| || ||||| |||||| ||
Sbjct 679 AAAATGGTCTAGACACAAGATGTGGAGAGATTG-TTCTGATGAATGAAAAGGGCAGAACA 737
Query 446 TGGACTGTAGACTTGAAACGAAAGAACTCATGTCC-AACTACTTACATCAAACGAGGATG 504
|||||| |||| |||||| |||| || |||| | ||||||||||||||||| ||||||
Sbjct 738 TGGACTTTAGATTTGAAAGGAAACAAATCATA-CAGAACTACTTACATCAAACAAGGATG 796
Query 505 GGGAAGTTTCTGTAATGCCAATGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTT 564
| ||||||||||| ||||||||||| |||||||||||||| |||| | ||| |||||| |
Sbjct 797 GAGAAGTTTCTGTCATGCCAATGGACTTAGAGCTGGAAGTATCTTCACTTTTAAACTGAT 856
Query 565 CCAAAGAGGTGGAACTCCAGGTT-TACGTTCATCCCACAGAGAGGTAGAAGAAGAAGCTA 623
||||| ||| |||||| |||| |||||| |||| || |||| ||| ||| ||||||
Sbjct 857 CCAAAAAGGAAAAACTCC-GGTTCTACGTTTGTCCCCCAAAGAGCCAGAGGAACAAGCTA 915
> Ahg932575 jgi|Araly1|932575|scaffold_400563.1
Length=1936
Score = 490 bits (265), Expect = 6e-138
Identities = 538/662 (81%), Gaps = 49/662 (7%)
Strand=Plus/Plus
Query 1 ACAATTCCTTTAGCCTTCTTCTTTG-AGAATATATAAGGAAGAAATGAGCAGAAGACGGC 59
||||||||| | || |||||| ||| |||||||| |||||||| ||||||||||||||||
Sbjct 438 ACAATTCCTGTGGCTTTCTTC-TTGAAGAATATAGAAGGAAGACATGAGCAGAAGACGGC 496
Query 60 AGAGTTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACT 119
||| | || ||||| || || |||| ||| ||| ||||||| || ||||| ||||||||
Sbjct 497 GGAGCTGAGATCAGACGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGACT 556
Query 120 TACCAACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACATCATTGT 179
|| ||||||||||||||||||||||| | |||||| ||||| | || ||||| | ||
Sbjct 557 CACTGACGGTTGGAAAGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTGGT 616
Query 180 -TTTCAGACAAGAGAGTGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTTGTTGT- 237
||| ||||||||||| | ||| |||||||||||||||||| |||||||||||||||
Sbjct 617 GTTT-AGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTG 675
Query 238 -GATTCAATAT-GTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAAGGAAA 295
|||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 676 AGATTCAATATGGT-TCGTGTTTAGACAACAAGAACAACCTCGGGAAGATTCAAAGGAAG 734
Query 296 AAGAA---A-GAAG-----CAGAGTCTTC---ACTAGATCTCT-CTTGTTTTGTGGCTAA 342
||||| | |||| |||||||||| |||||||| || ||||||||||||||||
Sbjct 735 AAGAATCCAAGAAGAGAAACAGAGTCTTCGTCACTAGATC-CTTCTTGTTTTGTGGCTAA 793
Query 343 TGTCACGCCTTCGAATCTAC---A--A-----T----CTTCCATTGA-GTTTTGTGAGGC 387
||||||| ||||| ||||| | | | |||||| || |||||||||||
Sbjct 794 TGTCACGGTTTCGAGTCTACGCGATGACAGACTGAATCTTCCAA-GAAGTTTTGTGAGGG 852
Query 388 AAA-TGGTCTAGACAAAAGGTGTGGAGAGAT-GATTCTGATCAACGAAAAAGGCAGATCA 445
||| ||||||||||||||| |||| |||||| | ||||||| || ||||| |||||| ||
Sbjct 853 AAAATGGTCTAGACAAAAGATGTGTAGAGATTG-TTCTGATGAATGAAAAGGGCAGAACA 911
Query 446 TGGACTGTAGACTTGAAACGAAAGAACTCATGTCC-AACTACTTACATCAAACGAGGATG 504
|||||| |||| |||||| |||| || |||| | ||||||||||||||||||||||||
Sbjct 912 TGGACTTTAGATTTGAAAGGAAACAAATCATA-CGGAACTACTTACATCAAACGAGGATG 970
Query 505 GGGAAGTTTCTGTAATGCCAATGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTT 564
| |||||||||| ||||||||||| |||||||||||||| |||| | |||||||||| |
Sbjct 971 GAGAAGTTTCTGCCATGCCAATGGACTTAGAGCTGGAAGTATCTTCACTTTCAAACTGAT 1030
Query 565 CCAAAGAGGTGGAACTCCAGGTT-TACGTTCAT-C-CCACAGAGAGGTAGAAGAAGAAGC 621
| ||| ||| |||||| |||| |||||| | | ||| | |||| ||||||| ||||
Sbjct 1031 CAAAAAAGGAAAAACTCC-GGTTCTACGTTTGTTCTCCA-A-AGAGCCAGAAGAACAAGC 1087
Query 622 TA 623
||
Sbjct 1088 TA 1089
> Ahg929910 jgi|Araly1|929910|scaffold_302367.1
Length=1031
Score = 311 bits (168), Expect = 5e-84
Identities = 288/343 (84%), Gaps = 20/343 (6%)
Strand=Plus/Plus
Query 296 AAGA-AAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTTGTGGCTAATGTCACGCCTTC 354
|||| |||||||||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct 242 AAGAGAAGAAGCAGAGTCTTCACTAGATCTCTCTTATTTCGTGGCTAATGTCACATCTTC 301
Query 355 GAAT---C-T-A---C--A---A-TCTTCCATTGAGTTTTGTGAGG-CAAATGGTCTAGA 399
|||| | | | | | | ||||||| |||| ||||||||| |||||||| ||||
Sbjct 302 GAATATACGTTATGACTCACTGAATCTTCCAATGAGATTTGTGAGGGCAAATGGTGTAGA 361
Query 400 CAAAAGGTGTGGAGAGATGATTCTGATCAACGAAAAAGGCAGATCATGGACTGTAGACTT 459
|| ||| |||||||||||||||||||| |||||||| |||| ||||||||||||||| ||
Sbjct 362 CACAAGATGTGGAGAGATGATTCTGATTAACGAAAATGGCAAATCATGGACTGTAGATTT 421
Query 460 GAAACGAAAGAACTCATGTCCAACTACTTACATCAAACGAGGATGGGGAAGTTTCTGTAA 519
|||||||||||| |||||| |||||||||||| | |||||||||| ||||||| ||| |
Sbjct 422 GAAACGAAAGAAATCATGTGGAACTACTTACATTAGACGAGGATGGAGAAGTTTTTGTCA 481
Query 520 TGCCAATGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTTCCAAAGAGGTGGAAC 579
||| |||||| ||||||||||||||| ||| | ||||||||| |||||||||| | |||
Sbjct 482 TGCTAATGGACTTAGAGCTGGAAGTTCCTTCACTTTCAAACTCATCCAAAGAGGAGCAAC 541
Query 580 TCCAG-GTTTACGTTCATCCCAC-AGAGAGGTAGAAGAAGAAG 620
| | ||||||||| ||||| | |||||| || |||||||||
Sbjct 542 TTT-GTGTTTACGTTTATCCC-CTAGAGAGCTAAAAGAAGAAG 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28477818999
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5